Pbra015172.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989946.1:4242423-4243541[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0036 0.3 11.9 0.4 1 23 43 66 43 66 0.95 2 10 0.25 21 6.1 0.1 2 21 95 114 95 117 0.88 3 10 0.00027 0.023 15.4 1.5 1 23 139 161 139 161 0.97 4 10 0.00038 0.031 15.0 0.2 1 23 165 187 165 187 0.95 5 10 0.016 1.3 9.9 0.5 1 20 192 211 192 215 0.81 6 10 0.00029 0.024 15.3 1.8 1 23 221 244 221 244 0.93 7 10 1.3e-06 0.00011 22.8 0.2 1 23 251 274 251 274 0.98 8 10 2.2e-05 0.0018 18.9 0.5 3 23 282 302 281 302 0.99 9 10 1.5e-07 1.3e-05 25.7 1.9 1 23 308 330 308 330 0.98 10 10 6e-05 0.0049 17.5 3.2 1 23 336 359 336 359 0.97
Sequence Information
- Coding Sequence
- ATGGATACGCGTATAAAGAATGATAGAAAACTGAAAGACCTTGACGCGATTAAAGCAAGGAAAAAGAATGCCACGTTACTTCTAGAACATACAAGGCTATGCCCGTTTAGATGGATGAAGAATTTATACATATGCTTCTACTGTGACCAACAATTCATTGATCCAGCGATATTGAGACACCATATCTTTATCGATCATAACCTTGTGACTTCCACTGTCATTAAATATGCAATGTCAAAGTTAAAGAGACACGAACTGGTTAAGGTTGACATAACTGATAATAGCTGCAAACTTTGCGATGAACTAACACCAGATATAAATTATCTAAAGCGGCATTTAGTCGATGTTCACAATAAAACTATAGATTTGAACACAACGGACGAAGTGTTGCCATTTAAAGTGACGAAAGACAGTTTCAATTGTGCCGTGTGCGATGAGAAATTTGACGAGTTCAAAACGCTGAACCATCACATGAATGTTCACTTCCAGAACTTTATTTGTGAACAATGCGGTACGGGTTTTATAACGCCGGAAAGACTTCGTACACATGCGTTTTCACACGAGAGCGGCTCGTTTCCATGCGAGTCGTGTGATAAGACTTTTAGATCAATGAACGCTAAGAACGAACACTTTGCGAATGTTCATAAACAAGTCAGAAGACATAGATGTCCGCATTGTCCCGAGGCGTTTAGGAATTACTTTCAAAGGAATAAGCACATCGCAGCAGTTCACGGAATCAAGCTGAAGGAATTTAAGTGTAATCTCTGCCCTAAAGTGTTCACGTCGAGTGGAAAATTGGGAGTTCACGTTCGGACTGTTCATTTGAAAATGAAAAGACATGGATGTAGTCTATGCGAGTGGAAGTTTTATTCCAAGTCGGAGCTGAAGGAGCACATGATCAGGCACGGTGGGGAGAGGAAGTTCAACTGTAATATATGCAAAAAGTCGTACGCCAGAAAGTATACACTACGCGAACATATGCGGATACACGAGAATGATCGGAGATTCGTTTGTAGTTATTGCGGTGGCTCGTTTGTTCAAAAATGTAGCCTTAATCACCATGTTAAAGTTAATCACCCATCAGTTAAAATTGATGAGTTCCACCCTATGTCGACATAG
- Protein Sequence
- MDTRIKNDRKLKDLDAIKARKKNATLLLEHTRLCPFRWMKNLYICFYCDQQFIDPAILRHHIFIDHNLVTSTVIKYAMSKLKRHELVKVDITDNSCKLCDELTPDINYLKRHLVDVHNKTIDLNTTDEVLPFKVTKDSFNCAVCDEKFDEFKTLNHHMNVHFQNFICEQCGTGFITPERLRTHAFSHESGSFPCESCDKTFRSMNAKNEHFANVHKQVRRHRCPHCPEAFRNYFQRNKHIAAVHGIKLKEFKCNLCPKVFTSSGKLGVHVRTVHLKMKRHGCSLCEWKFYSKSELKEHMIRHGGERKFNCNICKKSYARKYTLREHMRIHENDRRFVCSYCGGSFVQKCSLNHHVKVNHPSVKIDEFHPMST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206780;
- 90% Identity
- iTF_01205942;
- 80% Identity
- -