Pbra019805.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- CRZ1
- Assembly
- GCA_905147105.1
- Location
- LR989941.1:7871697-7892158[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.4e-06 0.00061 20.4 3.5 1 23 14 36 14 36 0.97 2 15 0.00013 0.011 16.5 2.7 1 23 42 65 42 65 0.95 3 15 5.8e-05 0.0048 17.5 5.7 1 23 71 93 71 93 0.97 4 15 1.4e-05 0.0012 19.5 1.0 1 23 99 121 99 121 0.98 5 15 0.002 0.16 12.7 6.8 1 23 127 149 127 149 0.97 6 15 0.0059 0.49 11.2 1.1 1 23 156 179 156 179 0.89 7 15 4.1e-06 0.00034 21.2 0.2 2 23 188 210 187 210 0.95 8 15 8.1 6.7e+02 1.4 2.6 2 23 217 238 216 238 0.82 9 15 0.055 4.6 8.2 1.0 1 23 244 268 244 268 0.91 10 15 0.0001 0.0084 16.8 3.5 2 23 275 296 274 296 0.96 11 15 0.00031 0.026 15.3 0.3 2 23 305 327 304 327 0.95 12 15 0.0002 0.016 15.9 0.4 1 23 333 355 333 355 0.96 13 15 0.0084 0.69 10.8 3.0 2 20 362 380 361 382 0.95 14 15 7.8 6.5e+02 1.4 4.9 1 22 543 564 543 565 0.89 15 15 0.0012 0.1 13.4 2.1 1 23 717 739 717 739 0.98
Sequence Information
- Coding Sequence
- ATGCCTAAAGTGAAAAAGAAATCTGCAAAATCAGGGACTCATAAGTGCCCAAAATGTGAAAAGAAATTTTCGGATAGTTCAGGTCTAAATCATCATCTTGAATTACATGTAGAGGATCGTCTTCATGTATGTACTGTATGCAATGCTACATTTAAAACAAAGAGGTACTTAAGCAGGCACAGAAAGGGTGTTCATAGTGAACCTGAAGAACATGAATGCAAGGATTGTGGCAAAAAGTTTCATTTTAAGAGTTCACTTAATCAGCATAGGCTGGTGCACACTGATGAAAGGCCTTACAAGTGCAAGTGGTGCAATAAAGGCTTTAACTCCACATACAGCCTGTCTAGTCATATCCTAATACATAAGAATTCAAAACCATTCAAGTGCAGCTTTTGTGATTATGCGTGTCGTGACAGCTCAACATTGAGAAAACATGAGCATAGACATATAGGCCAAGTAACTACTTATAACTGCAAGATATGTGAGAAAAAATACAGCCAAAAACGACTATTAGAATTTCACGTGGCCAAAGAACACTTAAATATTGACGTGAACGTATTACCTTGCGATAAATGCGGAAAGATGTTTAGGGATAAACCTTCGCTGAAGGTGCATGTTCAAAAAATTCACAAACGTCTCTACGCCGTGAAATGTCCCGTGTGCGGTGTTACAAAAAGTTGCAAACAACATATGGAAGGCCACCTGAGATCACACCTCGACGAACGACCGTTTTGTTGTACTTTTGAAGGCTGTGCGAAGGCTTTTAAGGACGCGAGGGCACTGAATCTCCACGAATTCCTCCACTATCCGGAGCGCTATTTGAAATGTAAAATTTGTGATAAACGCTTCTCGCGTCGGTCTAGGTTGGACAGTCATAAAAAGCAGCATTACCTCGTTAAGCAGAAATATGTTGTGTGTGATTATTGTAATGTCAGATTTTACTCAAAGAATTACCTCATAAATCACATAGCCAAAAAACACTTATATAAAAATAAGTACATATGCGATACATGCAACAAGGAGTTTTGTACAAAACCAAGTCTCATTGGACATATTATTGCACATAATTCAGAAACGGACAAGCAGTGCAAACTGTGCAAGAAGTCATTCAAGAAACACATCTATCTTAAAAGTCATTATTGGAATACACATTGCATTAAATATAAGATGACGAGAAAAAATGTGAAAATAAAGAGGACTTCAATGGATCAAGAAATAAAAACGGAAGCTGCTGAGAAATTTGTGATTAAGTCGGAACCCATGAGTGATACAGACGAAGAGACGGAATACTCGAAGTCAGTTTTGGCTGAAGATTTAAAGGCTTCCGGCAACCAAATGAACATCTTCTACGACATACAGACACTGGACAGGAATAAAATACCCAAAATCAATGATCCGCGGATAAATAAAAAGCTAAAAGAGACTGTTAAGACAAAGATCAAACGGTTATTGCAAAAAGCGCAGAGTTTGAAGGAGAGGTGTGATCTAGAGAGAGCGAGAAGGAGATATAACAAGCGAATGGAGAATTTTTTAAAGAAGGAAGATCCACAGACTGAATTAACAAAGACCGAAGTCGGAAAAATTTCTTGTGAAAGAGATGAAAATGGAAAATTAAAATTCAACGCTCATCAGTGCTATGTTTGTTTTACTCTATATAAAACCAAAGAAGAGCTGTTAGATCATTGCCAGCAACATTTTGACTTGTGCCACACTAAAATGTTACGGAAGTGCCCTCTGTGTGACCACGTGTCGAGCATGACACTCGGCCGACATCTACTAAGAAAACACAAAATTAAAACCAAACTTTACACTGGCAACATTAAAAATGATGGGTCTCAATTTTATTATGACTTGAATGGTAAAAAAATTGATAAACTAGAAGTGATACCGAGTGTGAAATTATTGAACAGACAGGCTTATATCGATTTAGACAGGACAAATCGCGAGAAAAGAGATAAAGTTATCGCAAAAACAAAATTGGTTAAAAAAGGTACAGAGTGGATTGTGGAAAAGGAGAAATTGAATATTAAAAACTTTAAAATACCGAAGCTATCCGAAATAAATTCGTCGATGAATTTTGGTGAGGATCATTGCGCGCGTATGAAATCTTTAAGTGTTGCTACAAAACAAAATGGCGGCAAAATGTTATATCCCTGCGACCGATGTGAAAAAATTTGTCAGACCTTAAGCGCGTTAAAGCTACATTATCGACGACACGATCCAAATGCCAAGCCATTTAAGCCTAAAGTGTGGAAGCATAAATTAAAAAATAACTATAAAAAACCGAATAACAGTAATAGTGATATAGTCTGTGACAAGACAAAGAGATATGTCAAACCTAAACCGATAACAACCAAGCATAGATGCGATCCAGAACTAATAAAATTTTATGAAAGCAATATAACGGGTGACAATATAGAGTTCTGGCAGTTTCTTAAAATATACAATCGACTGACTAGAGAAAATATTAAAGATTTTTCGGATTTAGAACATAGAACTGATTTCGGAATCCAGCCAGTTTCAGATGTGCCGAGTGGAACTAATAACAATAATAGGAGCTGTAATTACAAAATAACTAAAGATGTTGGTAAAAAGAAAATGATACCACAATTAAAAGTCTTACGACATATCTTAATAAGCAGGAGCGAGTATAAGAAAAGAAATGAAATTAAAGCAAGATTAAGACAAAAACTTGTTGTGGAAGTATAA
- Protein Sequence
- MPKVKKKSAKSGTHKCPKCEKKFSDSSGLNHHLELHVEDRLHVCTVCNATFKTKRYLSRHRKGVHSEPEEHECKDCGKKFHFKSSLNQHRLVHTDERPYKCKWCNKGFNSTYSLSSHILIHKNSKPFKCSFCDYACRDSSTLRKHEHRHIGQVTTYNCKICEKKYSQKRLLEFHVAKEHLNIDVNVLPCDKCGKMFRDKPSLKVHVQKIHKRLYAVKCPVCGVTKSCKQHMEGHLRSHLDERPFCCTFEGCAKAFKDARALNLHEFLHYPERYLKCKICDKRFSRRSRLDSHKKQHYLVKQKYVVCDYCNVRFYSKNYLINHIAKKHLYKNKYICDTCNKEFCTKPSLIGHIIAHNSETDKQCKLCKKSFKKHIYLKSHYWNTHCIKYKMTRKNVKIKRTSMDQEIKTEAAEKFVIKSEPMSDTDEETEYSKSVLAEDLKASGNQMNIFYDIQTLDRNKIPKINDPRINKKLKETVKTKIKRLLQKAQSLKERCDLERARRRYNKRMENFLKKEDPQTELTKTEVGKISCERDENGKLKFNAHQCYVCFTLYKTKEELLDHCQQHFDLCHTKMLRKCPLCDHVSSMTLGRHLLRKHKIKTKLYTGNIKNDGSQFYYDLNGKKIDKLEVIPSVKLLNRQAYIDLDRTNREKRDKVIAKTKLVKKGTEWIVEKEKLNIKNFKIPKLSEINSSMNFGEDHCARMKSLSVATKQNGGKMLYPCDRCEKICQTLSALKLHYRRHDPNAKPFKPKVWKHKLKNNYKKPNNSNSDIVCDKTKRYVKPKPITTKHRCDPELIKFYESNITGDNIEFWQFLKIYNRLTRENIKDFSDLEHRTDFGIQPVSDVPSGTNNNNRSCNYKITKDVGKKKMIPQLKVLRHILISRSEYKKRNEIKARLRQKLVVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206761;
- 90% Identity
- -
- 80% Identity
- -