Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989946.1:1450825-1459335[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.012 0.99 10.3 0.0 3 23 112 132 110 132 0.97

2 15 0.0027 0.22 12.3 2.1 1 23 220 242 220 242 0.99

3 15 3.6e-05 0.0029 18.2 1.1 1 23 248 271 248 271 0.97

4 15 0.34 28 5.7 3.9 1 23 276 299 276 299 0.93

5 15 6.9e-07 5.7e-05 23.6 0.3 2 23 456 477 455 477 0.98

6 15 0.00018 0.015 16.0 1.5 1 23 483 505 483 505 0.98

7 15 0.57 47 5.0 9.7 1 23 554 576 554 576 0.96

8 15 0.036 3 8.8 0.3 1 23 583 605 583 605 0.95

9 15 0.006 0.5 11.2 2.7 1 23 611 633 611 633 0.98

10 15 8e-05 0.0066 17.1 2.0 1 23 639 661 639 661 0.97

11 15 0.00054 0.045 14.5 2.9 1 23 670 692 670 692 0.99

12 15 9.2e-05 0.0076 16.9 0.6 2 23 738 759 738 759 0.97

13 15 0.0022 0.18 12.6 3.1 1 23 776 798 776 798 0.96

14 15 1.8e-06 0.00015 22.3 0.7 1 23 804 826 804 826 0.98

15 15 3.7e-05 0.003 18.2 5.2 1 23 832 855 832 855 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.012	0.99	10.3	0.0	3	23	112	132	110	132	0.97
2	15	0.0027	0.22	12.3	2.1	1	23	220	242	220	242	0.99
3	15	3.6e-05	0.0029	18.2	1.1	1	23	248	271	248	271	0.97
4	15	0.34	28	5.7	3.9	1	23	276	299	276	299	0.93
5	15	6.9e-07	5.7e-05	23.6	0.3	2	23	456	477	455	477	0.98
6	15	0.00018	0.015	16.0	1.5	1	23	483	505	483	505	0.98
7	15	0.57	47	5.0	9.7	1	23	554	576	554	576	0.96
8	15	0.036	3	8.8	0.3	1	23	583	605	583	605	0.95
9	15	0.006	0.5	11.2	2.7	1	23	611	633	611	633	0.98
10	15	8e-05	0.0066	17.1	2.0	1	23	639	661	639	661	0.97
11	15	0.00054	0.045	14.5	2.9	1	23	670	692	670	692	0.99
12	15	9.2e-05	0.0076	16.9	0.6	2	23	738	759	738	759	0.97
13	15	0.0022	0.18	12.6	3.1	1	23	776	798	776	798	0.96
14	15	1.8e-06	0.00015	22.3	0.7	1	23	804	826	804	826	0.98
15	15	3.7e-05	0.003	18.2	5.2	1	23	832	855	832	855	0.98

Sequence Information

Coding Sequence: ATGGTGGAACCAGCTGTTTCTGATGTGGATCCGTTGGGAGCCTTTTCTTACTTGTCTCATTACCACTATGGTCAGTTTCCAAACACAATTAACCCAACATATCAGTTTGCTGTTAAACCAGAAGAATTCTACACATTACCTCCAAGCAGTACTTCTAATAATTCCAACTATGTAAATACAACTCCCACAGCTCACATTCAAAGTGAGAAACAACCAGATACAACTGTAAACTTTGATATAAAACCTTTTTTAAAAACCAATGGCAAAGTTAAAAAAGAGAAAAAAAGCTTTGTTTCTCAAAAAATAACACAAGAAGGATATCCATTCTATGGCTGTGCTGTTTGTAATATAAGTTTTCCGACACTTAGAGAATTAGATTCACATGTTGCAACACACAAAGGTAGAACAACTAGTTACGATTTAAGAGTGAAGAATGCATTGAAAAAGAAAAGATTAAAAAAGGAACAGAAAAAATTAAAGAAAATGAAAAAAGAGACCTGCCTGCCTGATATTGATATTAAACCTGAAGATGGTTATATTGGTAATGAGAAAGCAACAGAATTTGGTTTGAACAACAATGATGTGAAAAACAAAAGCAATCCAGAAGAACTAAAACCCCAAGAAAAGTCAACAGAATCCACAAATTTAGAAAAAATTTATAAATGTTTTGCCTGTCAGAAACAGTTTATATTAAGTTATTATTTGAAGTTACATGTTAGATCACATACAGATGAAAAGCCATACACCTGTGAACAATGTGGGCAATCCTTTATAACTGCTAGCAAGCTCGGACGACATAATAAGAGATTTCATTTATCTGTCCAATATCAGTGCAGAATTTGTTATAGAAAGTTTTACAGATTTGAAATCCTAACGCGACATTTTGATAAAAAACACGCTGATGACAAATTAGAAGGTGAACCATATGACTTCAATGCAATATTACCATACTTAAAAGAATTGGAAGAACAACTACGCGAAAAACAAGAAATGGAGAAAACTAAGTCGAAAGATGATATATGGTCTAACGAATGGCCAAGTCCGATAATAGAAAATGAGAAAGAAGATATTAAAGAGACTAAGAAAGAAGTAGAAGATAAGAATTTAGAAATAGAAGTTGTGAAAGTGCCTATGGATGATGTTGAAATTAAAGAAGAAATTGAGGATGTTGATTATAATTATGATGATGCGGTTAATGATAATGGAATTACTGATGATACAAATCATGATTTGAATTATAATGAGGCTAATGATAATGATAGAGACGACGCAAGTGTTAATAATGACGATTCAGACGAAGACTATTTCCCATCAAACACGTGGTTGAAACCAGAGGAGCCGTTGGAAATAACAACGAACGGCGTCAAGTGTCCCGTGTGCGATAAAAGTCTAAGTACGGCGTCGTACATGCGCGTGCACATGCGTACGCACACGGGCGAACGTCCGTTCAAATGCTATATTTGTGATATGGGCTTTATAACGGCGAGCAAAATGCACAGACACGTCTTGACACATCCGGAGTCGTTGAAGGATGAAGTCAAATCGGAAAATGATGGGAACAACGAAAAGGATGATGGGGATAAGGAGAAAGTGAAAAAGGCTGTCAAGAAGTTATCGAAGAAAATCAACGAAAAGTCCAAGAAATATCGGAAAAGGCCTCACGCGTGTGAATATTGTCATAAAAGGTTTTTGCATCTGCATACATTACAGATCCATAAAAAATCCCATGAAGGCGAAGAAATTAAATATAGATGCCACTACTGTCTTCTAGAAGTCGAGGATGAAGAGAATCTGAAGGTTCACGAAGGGAGCCATACAGGACCAAAGCCCTACCAATGTACTGTATGTGATAAGTTGTATAAAAAGAGAGAAAGTATGCTTTATCATAGAAAAAATCACAAGCCCGAACGGGAATTCATATGCGATATATGTACGAAATCTTTTAACGCACAGTGCAAACTGCAAAGGCATATAATAAGCCATAGTGTGGATAAATATATGCTGAAGTACGAGTGTCCTGTCTGTGCGCATATGTTTAATACAAAATATCACGTCCAGATGCATTTGTCCACACATCAGCGGGAAGGAGTGATACAAGAAGAAAATCGCAACGAAATCCTGGCTATGGTCTTACAAAACGCGCGTAGAATTCCCCGCAAGGGCGAGACACACAACTTGACGGACGTCATACCGTCGGACGAGCGAAGCCGCGTGTGCAACATATGCGGCGAGGTGTTCCAGCACTTCTATTACCTCGAGGAGCACCTGAAATCCCACGGCTCCAAGATCGCGATAGAGAACATCGACAAAGAGGAGGAGAAGAAATATATTTGTGAAGTTTGTAATAAAGCTTTCAAGTTGCATTATTATTTGAAATTGCACAGCTTCACCCACACAAAGGAGAAGCCGTTTATTTGCCAGCAGTGCGGGAAGGGCTTCATCACCAGGGGGAAGCTGAAGCGGCATTTGGAGACTCATACGGGATTAAAGAAATACCAATGTCATATTTGTTGTAAGTTCTTTACGCGGCCGAGTTATTTGAGGGTTCATGTGAGGACTATACATGGTGCTCAGTTGGTTAGGTTGGGGCTTAGGACGTAA
Protein Sequence: MVEPAVSDVDPLGAFSYLSHYHYGQFPNTINPTYQFAVKPEEFYTLPPSSTSNNSNYVNTTPTAHIQSEKQPDTTVNFDIKPFLKTNGKVKKEKKSFVSQKITQEGYPFYGCAVCNISFPTLRELDSHVATHKGRTTSYDLRVKNALKKKRLKKEQKKLKKMKKETCLPDIDIKPEDGYIGNEKATEFGLNNNDVKNKSNPEELKPQEKSTESTNLEKIYKCFACQKQFILSYYLKLHVRSHTDEKPYTCEQCGQSFITASKLGRHNKRFHLSVQYQCRICYRKFYRFEILTRHFDKKHADDKLEGEPYDFNAILPYLKELEEQLREKQEMEKTKSKDDIWSNEWPSPIIENEKEDIKETKKEVEDKNLEIEVVKVPMDDVEIKEEIEDVDYNYDDAVNDNGITDDTNHDLNYNEANDNDRDDASVNNDDSDEDYFPSNTWLKPEEPLEITTNGVKCPVCDKSLSTASYMRVHMRTHTGERPFKCYICDMGFITASKMHRHVLTHPESLKDEVKSENDGNNEKDDGDKEKVKKAVKKLSKKINEKSKKYRKRPHACEYCHKRFLHLHTLQIHKKSHEGEEIKYRCHYCLLEVEDEENLKVHEGSHTGPKPYQCTVCDKLYKKRESMLYHRKNHKPEREFICDICTKSFNAQCKLQRHIISHSVDKYMLKYECPVCAHMFNTKYHVQMHLSTHQREGVIQEENRNEILAMVLQNARRIPRKGETHNLTDVIPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIENIDKEEEKKYICEVCNKAFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICCKFFTRPSYLRVHVRTIHGAQLVRLGLRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01205912;
90% Identity: iTF_01205912;
80% Identity: -