Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989933.1:18865321-18875360[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1e-06 8.6e-05 23.1 1.8 1 23 192 214 192 214 0.97

2 12 0.0035 0.29 12.0 1.9 3 23 224 244 224 244 0.94

3 12 0.00029 0.024 15.4 1.5 2 23 252 273 251 273 0.97

4 12 0.00057 0.047 14.4 0.5 1 23 279 301 279 301 0.97

5 12 1.6e-07 1.3e-05 25.6 1.2 1 23 310 332 310 332 0.99

6 12 0.00014 0.012 16.3 1.3 2 23 339 360 338 360 0.96

7 12 3.2e-05 0.0026 18.4 1.9 1 23 366 388 366 388 0.98

8 12 2.9e-09 2.4e-07 31.1 1.4 1 23 394 416 394 416 0.99

9 12 1.3e-05 0.0011 19.6 2.9 1 23 422 444 422 444 0.98

10 12 0.00027 0.022 15.5 1.1 1 23 450 471 450 471 0.97

11 12 0.042 3.5 8.6 0.6 1 23 477 499 477 499 0.95

12 12 5.6e-05 0.0046 17.6 1.3 1 23 505 527 505 527 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1e-06	8.6e-05	23.1	1.8	1	23	192	214	192	214	0.97
2	12	0.0035	0.29	12.0	1.9	3	23	224	244	224	244	0.94
3	12	0.00029	0.024	15.4	1.5	2	23	252	273	251	273	0.97
4	12	0.00057	0.047	14.4	0.5	1	23	279	301	279	301	0.97
5	12	1.6e-07	1.3e-05	25.6	1.2	1	23	310	332	310	332	0.99
6	12	0.00014	0.012	16.3	1.3	2	23	339	360	338	360	0.96
7	12	3.2e-05	0.0026	18.4	1.9	1	23	366	388	366	388	0.98
8	12	2.9e-09	2.4e-07	31.1	1.4	1	23	394	416	394	416	0.99
9	12	1.3e-05	0.0011	19.6	2.9	1	23	422	444	422	444	0.98
10	12	0.00027	0.022	15.5	1.1	1	23	450	471	450	471	0.97
11	12	0.042	3.5	8.6	0.6	1	23	477	499	477	499	0.95
12	12	5.6e-05	0.0046	17.6	1.3	1	23	505	527	505	527	0.98

Sequence Information

Coding Sequence: ATGAAACCAAGTAGTCAGATTATTGTAGAAGCATCGATAAAAAATAGCGAATCCTTTATGAAAAATTATGTTACTTGTCGTATTTGTGCAGGCTACGATGAAAAGTTTTTCAGCCTTAATTCATATGAAGACGAGTTAAACCTTGGCGATATGCTGACATCTATAGCCTCTGTCGATATACCAGTCGAAGAAGCAATTTTGTTTAATGTCTGCTCTGAATGTTGTAACAACATTATTTTTTGTTATAAGTTTAAGAAGAAATGTCAGAAGTCATTAATTCTGTATAGAGACATAACTAGTAAAGAGACAATTGCGGTTAAAGTTGAGGATAACAGTGTACTAGAAGAGAATAAGGAAATTGATTCTAAAACAACACTAATGGAAAATAATGGACTAAAAGTGCATAATATGTTAAATATGAATGCTGAAGTATTATATGGCATAGAGTTCTTAGATGATAATGTTTTTGAAGATGAGAAATCTCCCAAAAGGGTTGTCAGAAATAGATCAAAAATTCAAAAAGCAGTGAAGACAAAACAGCAACATAATCAAGACAGAGTTTCAAAAAACTTTCATTCTTGTAAAGTTTGTGACAAGAAATTTATCAGCGCGATTAATTTGAAATCACATATGAAAATACACAGTTCGGAAGACAATAATTTAATAGGTTGCAAACAATGCAACGAAAAATTTTCCTCTGAGCATGATTTGAGAGTACATTCTGCTCTGCATATCACAGCCAATGATAAATGGAGATGCTCTGCATGTTCAAAAGAATTTTTTGATCGCGTAAGTTTTCGTCGTCATATACGTCGTCACTATAAGACGAAACAGTTTGCGTGTGAATGGTGCGAAAAACAGTTTGCGGAGCTCTGTGCATTAAGGAGACACGAACGCGTGCACACCGGGGAATTAAGAGAAACGCCATATGAGTGCAACTTGTGTGATAAAAGGTATTCAAATAACTACCTCCTGAAAGCGCACATGATGCGACATACAGGCTTGCGTCCATGTACATGTGATGTTTGTGGCAAAGGCTTTCCCTCAATGCGTCTCCTCAACTCGCATAAACTAACTCACTCCGATCAGAAACCATACGCGTGTCCGGTATGCGATAAAAGATTCCGTCACGAGTCGACGCGCAAATCTCACGTACTCACGCACACGGGGGAAAAGCCGTACGTTTGTTCCGTGTGTGGGAAGACATTTCGTCAAAACTCTAACTTCACTGTACACATGCGGTCACATACTGGTGAAAAACCCTACTCCTGCGAGTTGTGCCCACGACATTTCAAATCAACATCATCTCTAAGCTCGCACATGAGCACTCACTCGAAGGAGAAACATTTCGCCTGTACTGTTTGTGGGAAGAAGTTTCTACGTCAATCTTTATCAAACCACATGCGCTTGCACACGGGAGAGAGATCCCACGCGTGTCCAGCATGCCCTAAAAGATTCCTTAGTGCTTCACGTTTAAAGGACCACTCCAAGATACATACAGATGAAAAACCCTTTGTATGCAATATTTGTGGATCGCTGTTTAAAAAGAAAGTATCGTTGACAAATCATCTAAAAAAACACGACAGCAAAATCAATGAAAAGGTTAGGAAATCTGTGAAAGCAAAAACATTAGAAACGGCTGAAGATATAAATGAAGACATGAACTTGCAAATAACAGAGGTACCTTTGGAAGTGTCAGAAGAACTTGTTCTACAAGAGGACAGTAATGGGAAAACTGAATTAATTGTTATAAAAGAAGAGTATGCACCTCAGCTTCTAGAAGGACAATTGTTAAACTGTATCACATTGATCCAGGCTTAG
Protein Sequence: MKPSSQIIVEASIKNSESFMKNYVTCRICAGYDEKFFSLNSYEDELNLGDMLTSIASVDIPVEEAILFNVCSECCNNIIFCYKFKKKCQKSLILYRDITSKETIAVKVEDNSVLEENKEIDSKTTLMENNGLKVHNMLNMNAEVLYGIEFLDDNVFEDEKSPKRVVRNRSKIQKAVKTKQQHNQDRVSKNFHSCKVCDKKFISAINLKSHMKIHSSEDNNLIGCKQCNEKFSSEHDLRVHSALHITANDKWRCSACSKEFFDRVSFRRHIRRHYKTKQFACEWCEKQFAELCALRRHERVHTGELRETPYECNLCDKRYSNNYLLKAHMMRHTGLRPCTCDVCGKGFPSMRLLNSHKLTHSDQKPYACPVCDKRFRHESTRKSHVLTHTGEKPYVCSVCGKTFRQNSNFTVHMRSHTGEKPYSCELCPRHFKSTSSLSSHMSTHSKEKHFACTVCGKKFLRQSLSNHMRLHTGERSHACPACPKRFLSASRLKDHSKIHTDEKPFVCNICGSLFKKKVSLTNHLKKHDSKINEKVRKSVKAKTLETAEDINEDMNLQITEVPLEVSEELVLQEDSNGKTELIVIKEEYAPQLLEGQLLNCITLIQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01203432;
90% Identity: iTF_01203432;
80% Identity: -