Pmel003213.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- ush
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000286.1:178935-188273[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.082 6.7 8.0 0.0 6 20 262 276 258 278 0.95 2 9 0.00042 0.034 15.2 0.8 1 23 333 355 333 355 0.98 3 9 0.07 5.7 8.2 1.0 2 21 384 403 384 404 0.92 4 9 0.072 5.9 8.2 2.9 2 21 815 834 814 835 0.93 5 9 0.013 1.1 10.5 0.0 3 21 876 894 874 895 0.91 6 9 0.17 14 7.0 0.1 1 23 982 1004 982 1004 0.97 7 9 0.019 1.6 10.0 1.4 1 23 1010 1032 1010 1032 0.99 8 9 0.00048 0.039 15.0 0.6 1 23 1120 1143 1120 1143 0.96 9 9 0.48 39 5.6 0.8 2 20 1270 1288 1269 1290 0.92
Sequence Information
- Coding Sequence
- ATGCACAGTACGTGCATTTTATTGTATTCCATAAAAGTTTATTCCAAAGATTTAAGTCCTAATAATACCGCCAGCATAATGGATGATCATACAGATGAGGAAAGAAGATCTTCCCAAAACAATCATTATTCCAATCAGCAGCAGCAACAAATTAAAGAGACTGATTTAGTTATGAGAGAAAGTCAACACGAAGAGTATATAAAAATGTCGCAGCAAAACGAAGAAGATGCCGACTCACAGCCACCCCAACAGAAGAGACCAAAAATGGAAGTAGAAGAAGAATATAGGAGAAACTCTTCACCACCACCAAGTGTGCAATCGCCCGTAACCCGAACTATAGAAAATTCAAATGACTCTACTAAATGTGATGATTTTCAAAATCAAACAGATGAATCTAATTCAAAAGATCGTAGATCAACAAGTCCTCCCCAAAAGGCCATAACACCCGTTATTAGTCCTTCCAATGTAGAAATTTCACATGAGCACTTGGGCTCGCCGACAACGGGGCCAATGCCGAAATTAAGACTTAATGCGTTATTAGCTTCAGATCCAGCTTTAATGCCAGATGCCAAAGATTTAAAGGTTGTGCATGAAGAATCACAAACTCAACAGAGAATAGCACGTTTAGAACAACATCTGCAAAAGCAACTGCAAAGCGAAGACTCTGAGGTAAACGAAACAGATAATATAACACCACCAGCTACAGCGGCAGTGCTAGTGGATCCCATCAAAAAACCTGTGGTAGAAGCACCACAACGCATGAAAGTTTTTATGTGCATACCCTGTGGTATAGGATTTAGTTCTCCCTCTACTTTAGAGGCCCACCAAGCCTACTATTGTTCTCATCGACATAAAGATACCGATGAGGATAGTTCGTTGTCCGCAGCCATAGCTGATAAGACTTCAGCATCTCCTACGCAAGCAAATAGCTCAATAGCTAATATTACACAGGCTCCTGCAGAATCATCGGTGAAGCATGCCAAGACTGGCAAACAATATGCCTGTACTCAGTGTTCCTATAGTGCGGATAAGAAAGTATCGCTTAATCGTCATATGCGTATGCATCAAACATCACCGGCACCCAGTTCCAATGCTTCCAATAACGGCAGTGCCATAATTGAAGATAATTCTAGTCAACAAGTAGATCGTTACTGCAGCGATTGTGACATACGTTTTAATAATGTCAAAACCTATAGAGCTCATAAGCAACATTATTGTAGTTCCCGGAGAACAGATGGCCAATTAACACCTAAATTGGACGTTTCTACCACCTCGACGACACCTAAAGTTCCAGCTGTTGTTGGTGGTGCCATAAGTCCCCAAACTCGTACCAAAACACCCACTCCAGCTATGGTAGCTGCGGCAGCCGCCGCCGCAGCAGCTGCTTTACAACAGCCTCCAGCTACCCCATTCTTGGCATTACCCACAAATCCTATATTAATCATTCCATATTCATTAATACGTTCGGCTAGTCTAATCGCAGGACCCTTATCATCACCTTCGCCAGCTGTAGTAAATCCAGATACAACATGTTTTACTTTGGATAATGGCAATTTGAAACCTTTAGCTACAGCTTTGAATATAAATGCTCTAAATGCAGCCTCAAATGCTGCCAACAACATAGTAGCGGCAGCAGCAGCGGCGGCGACAGGACAACAATTGAATGTATCAGACGCTGCTGCACGTCAAACAAATTCAGCGGAAACTCTACTTACTGAAAAGAATGTCAAGCGTAATGTTGAGGAAATCACAGAAAATACTACTAAAAGAAAAGGAGAAGGTTTTAGAGACACCGCTCCTTTGGATTTATCTTTAAGACGTTCTCCGATTGCTGCTTTATTGCAGAGACAGCGATTTCATTCCGCCTCTTCATTTTTGGACAATGAACAACAACGTATAGACATGGAGAATTTATTGGAAGCGGGCAAAGAAAATTTAGCACTAAATGAAACGGGTAGCCTCACACCCGAACAAATTGTTTGTGCACCCTCATTGCCAAATAGTCCTTCCATGAGTCCCTCTCCCAAAAGGCGAACTATAAGTCCTAGAAGTTCCGGAGCCGGTAGTAACTCGTCTATGTCTCCTCCGGCCACAATACCACCAAACGCTTTAAATGCGGCCACAAATCCTTCAAACATTTTAGATAACCTACAGTTACGTTCCATGTTGCCAGCGGAACTGTTAAATCCTCTGTTAGCTAAACAAAACATGGAATTGGCTTTAAAACTCTCGGCCGCAGCTGCTGCTGCCGTAAGTTCTTCCACTGGAGGGGTACCAGCTGCTGGTACAACACCAGCTGATCTAGCGGCTGCCGTAGCAGCTGCAACCAGTAGAGGATCTCTCTTAGGTTTGCCGGTTCTACCACCAGCTGCTGCTTCCGCAGTACCAGTGCCCACACCTAGTGCAAATCAACCACAAATTTATGTTAAACAAGGCGTTTCGAAATGTAAAGAATGCAATATTGTTTTCTGCAAATATGAAAACTATCTGGCCCATAAACAACATTACTGTTCGGCTCGTAATCAAGAAACCACTGAAGGTGAAGCTAAAGTTTCGCCCACTTCTCATATGGCGGCAGGAGCTTCGCCTGCTGAAACAACACCTGTAGCTTATCAGCAATTAATTTGTGCAGCATGTGGCATTAAATACACCTCATTGGATAATCTAAGAGCCCATCAAAACTATTACTGTCCCAAAGGTGGTGGTGTCGCCGCTGCCACAGCTGCGGCTGCTAATGCGGACTCTACACAAGCGGTTTTAAAGAAAGAGAAATGCGGCAAGTGCAAAACTCTTCATGAACCGACTCTACCCTGCCCTCCTCCACCAGCGTTACAGCACTCACCAGCTCCTCAGCCGTTACCAGCAATCGGGCAACAACAACAACCTTCATTATCAACTAGCACCTCCTCTTCGTCGTCGGCCAACTCAAGTAACCAAAATCTCTACAAATGTCCATTGTGTGATGCTGTCAGTTTGACAGCCAGTGAAAGTCGCAAACATATGGAAACCCATGGCACAGTCAAAGCCTTTCGATGTACCATTTGTCGCTATAAAGGCAACACTTTACGGGGTATGCGCACTCATATACGCATGCATTTTGATAAGAAAACTTCCGACATTAATGAGGAACATTACATGGCCTGTATATTGGAGGATGAAAATATTGAAATACCAAGTGCTGCCTCGTTAAATCAAGAACATTTGGTCCAACAATTAGCTGCTGTTCAACAACAGCAGCAACAACAACAAAAACAGTTAGTAGCTGCAGCAGCTGTTGTAGCTGCTGGCCTTCAGCAACATCAGCATCAACAACAACAACAATCGCAGCTGCAGCTGCAGCAACAACAACAGCAGGTGTTTAATTGTGATATTTGTAATTATTCTTCAACTTATAAAGGCAATGTGTTACGTCATATGAAATTGGTACATCCACATATTGTCGCTGATTCCCCTTCCATTTCTCCGGAGGTAGGAGATTTAGACACTAACGAGACGACCTCGTTAAGCAGCAGTCACAATGGCGACAACAATATGAATACCTTTACTATAAAGTGCGAACCTATGGATCATCATGTCACAAATACCAGCCCTGCAATCCTATTGAATCCTCATGACAATAACAATTCACCCATACCGAATACCACGCATAGTAATGCAAATGATTTAATGCATCACATAAAGTCTGAACCTATGGAAATTTGCGTTGAACCTTCAGCCTTACATATACCTCCACCAACTTTACGATCACCAGCCATAGGACCGCCACCGTTACTAAATACCACACCAGAAGAGAATATAAATCAAAAATATTGTCAAACCTGTGACATTTCATTTAACTATATGAAAACCTTTTTGGCCCACAAACAATTCTACTGTAAGAATAAACTAAGAAGACCCGACACTAATGAAAGTCCAAGTCCTAACGCTGGAAATATAACAAATGTATTATCGCCCAATACTTTAATAATGCAAAAGAATAAGGAGAATTTGCAAGAAGCAGCCATTTGA
- Protein Sequence
- MHSTCILLYSIKVYSKDLSPNNTASIMDDHTDEERRSSQNNHYSNQQQQQIKETDLVMRESQHEEYIKMSQQNEEDADSQPPQQKRPKMEVEEEYRRNSSPPPSVQSPVTRTIENSNDSTKCDDFQNQTDESNSKDRRSTSPPQKAITPVISPSNVEISHEHLGSPTTGPMPKLRLNALLASDPALMPDAKDLKVVHEESQTQQRIARLEQHLQKQLQSEDSEVNETDNITPPATAAVLVDPIKKPVVEAPQRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKDTDEDSSLSAAIADKTSASPTQANSSIANITQAPAESSVKHAKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSSNASNNGSAIIEDNSSQQVDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTDGQLTPKLDVSTTSTTPKVPAVVGGAISPQTRTKTPTPAMVAAAAAAAAAALQQPPATPFLALPTNPILIIPYSLIRSASLIAGPLSSPSPAVVNPDTTCFTLDNGNLKPLATALNINALNAASNAANNIVAAAAAAATGQQLNVSDAAARQTNSAETLLTEKNVKRNVEEITENTTKRKGEGFRDTAPLDLSLRRSPIAALLQRQRFHSASSFLDNEQQRIDMENLLEAGKENLALNETGSLTPEQIVCAPSLPNSPSMSPSPKRRTISPRSSGAGSNSSMSPPATIPPNALNAATNPSNILDNLQLRSMLPAELLNPLLAKQNMELALKLSAAAAAAVSSSTGGVPAAGTTPADLAAAVAAATSRGSLLGLPVLPPAAASAVPVPTPSANQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQETTEGEAKVSPTSHMAAGASPAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGVAAATAAAANADSTQAVLKKEKCGKCKTLHEPTLPCPPPPALQHSPAPQPLPAIGQQQQPSLSTSTSSSSSANSSNQNLYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDINEEHYMACILEDENIEIPSAASLNQEHLVQQLAAVQQQQQQQQKQLVAAAAVVAAGLQQHQHQQQQQSQLQLQQQQQQVFNCDICNYSSTYKGNVLRHMKLVHPHIVADSPSISPEVGDLDTNETTSLSSSHNGDNNMNTFTIKCEPMDHHVTNTSPAILLNPHDNNNSPIPNTTHSNANDLMHHIKSEPMEICVEPSALHIPPPTLRSPAIGPPPLLNTTPEENINQKYCQTCDISFNYMKTFLAHKQFYCKNKLRRPDTNESPSPNAGNITNVLSPNTLIMQKNKENLQEAAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00260189;
- 90% Identity
- -
- 80% Identity
- -