Pmel019278.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010002657.1:81158-87664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.049 4 8.7 0.1 1 21 1180 1200 1180 1204 0.89 2 8 0.014 1.2 10.4 1.2 1 23 1679 1702 1679 1702 0.97 3 8 9.5e-06 0.00077 20.4 3.7 3 23 1730 1750 1729 1750 0.98 4 8 3.4e-06 0.00028 21.8 0.5 1 23 1756 1778 1756 1778 0.99 5 8 1.9e-05 0.0015 19.4 0.5 1 23 1784 1806 1784 1806 0.98 6 8 0.022 1.8 9.8 1.7 1 23 1812 1834 1812 1834 0.95 7 8 0.00046 0.037 15.1 0.0 2 23 1841 1862 1840 1862 0.96 8 8 0.003 0.24 12.5 3.6 1 23 1868 1890 1868 1891 0.96
Sequence Information
- Coding Sequence
- ATGGAAAGTGTTTCAAATCATAATAATTGTAATAATAATAGACAGCAATTTGTTGTGGAAGACGAGCAGCAACAGCACCTGTTTCAATTATCCGATCATTTAAAATGTGGCGAAGTATACACTTGGCTGTGTGCTGGAGAACTGTATGCGATAGAATGTAAATTGTGTGAAGATCAACCATTATGTCCTTTGTCCGAATTTCCACAACACATGCAGGTATGGCATACAGATTGGGAACAAAATCAGGAAAATGAAGACACTTATTCAGATGATAATGATGACGTAGAACATTATTGTGAATACAATAAACCGGCTTTACCATTTACCACCGAAAACAATGACTTATTTGAGTCAAACCATCAGTTAGAAAATAAAAGAATACTGCAGCATGAACAAGAACATGGCTTTCACCCGCGGCAAAATGAAGAAGAGATTTTAGAACCTTTTGAACAGGTTTTAATAGAACAAGACAATGACACAGATTCCATACAAATTAACGATTATATCAATGAGCAAGAATCTTTGAATGAACAACAAAAACCGGTTACAACGTTAGAAGAAGTAACTGAAACTCGATGTAAACAAACGCCGCAATTTAATATAAATAACACAGATGAGAGTAATTGTAAACAGAGAGACTTAAAAAGTAAAATAACAGTTAAAGAGACTGAATTACGATATTTGGAAGAAACAACATTTTCTGTAAAAAAATTGAACGTTAACCACTTAACTGAACAACAATATAATGAAAAATCTTTCGATTCAGAAGCAATAAAGGATACTTTTAAACCAAAACCCAAAAATAATGAAAAATATAAAATAAATGCAAATAATTTAAACAAAATTAAAATAAACGAGGCATTAATAACAGAAAATGAAAATGATTTGGCTGAAACGAGTAAAACTTTGCAAAATTCTAACAAAGCGCCTGAAAGAGTTAAACAAAAATTAACCCAATCAACAGAAAATAAAATAAATTTAAGAAGTTGTGCAATCAAAATTACAAATACAAAAGATATCCGCAGTATTCAAATTGAAACAAGTGAAAATCAAACCAGTGAAACAGTAAATGTAGAAGAACCCAAAAATGACAAAAAATTTAAATTCTTGAAAAATATTAGACAAAATGGAAAAAAATTAAAAAATGTACAAAAACAAACAAGAAATTTGAAAACAGTAGAAAACAATTTAAAAAAGACGATTCAACGTTACAGTGAAAGGAACAAAAGTGAAAGAAAAATAGGTGAAACTGCAAAAGGAACAATTAAAACTGAAAAAAATAATTTAAGATTTATAAAAATACAAAACCTGAAAAATATAAATTCTGGTCAAAATAATAAAAAGAATTCCCAAACGCTAATAAAAACCGGAAAAGCTAAGACATTGCTAAAAGTAAATTTTAAACAACTGAGAAGAGTTAAAGAAAATCAATTAGTTTTAACTGAAAATAAAACAACGTGTAAGAAATCAGCCAAACTAGAAAAATATGAAACACAACCAAGTGAAAATACAACAGTGAAATTAAGTAAAACCCAGAAAAAAGAAAACGAAACGCAACTAAGTGAAAATGAAATTAAGATAAAAAGAAGTACAAGAAAGAATTACAAACCATTGGCAAAAACAAAAGAAAATAAATCAAAATTAAACGAAATCAGAAAATTTAAATTAAATGAATCCGAAATATTTAAAAATAAAAATGAAACGCAACAATACAACCATATAAAAACAACTGGGGACAAGCAATTAAATGAAAATAAATTAGAACAAAATGAAAATGAAACAGAAAAAACTAATGAAATGGATTCGCAGCTCAGTGAAAATTTATTTGTGGCAAGTGCAATTAAAACAAATGTTATAGAAGATTTGAAAGCAAAAGATAAACAGAAACTATATGAAATCAAAACAATATTTAAATTAGGTAAAACTAAAAAGAATAATGATTCCTTAAGTGATAAACCACAAATTAGAAAATCCTTAAGAAATTTAGGAAAATCTAAAGAAATTATAACAAGCGACAGCAGAAGTTTAATAAAAAATAGAGAGCTAGGAACAAAAGTCAAACAATTAGGAGAGGAGGAACAAAATGGAATGGAACAAGAAGAAATTATTAAAGCTGATATTGGCGTTTGTGTGAATATTGTGAAATTACCAAACGAATCGAAAAATTTCATTAAGTCAGAGCAGATAACAGCAGTTAAGAGAAATCCGAAAAAATTTTCAGAAGAACTTAACCAAGAGGAACTAGATAAAAGGAAAACCCAGCAGTTAAGGCGAAAAATTATTAACTCTAAAAATAAAAAGAAAATTTTAAAATTGGAACAACCAAAACGTTCTTCGAAAGCAAACTCCCTCAAAGAAAAGTCTGAGACAGAAGATCAAACAGACTTAGAAACAGCATCAAAGAGCTCAAGTAGAGAACAAACTTTTGAAATAACCCACGATTCATTTAAAGACTCGGATGCAGCATCTAACAGTACATTAGAAGATTCCACTCTTAGCAGCTTGTACGTTTCAAATCCTTACTCTCCTTCAAAACTTTCCTCAGAAGGATACTGTTCCAACAGGGTAGAAGATGAAACGGATTTAGATTCTCCATTCAAGAGCGTAAATGCAGAACAAACTTTTGAAACAACTGAAAATTTATATAAAGAATCTGATGCAGCATTTATCAAATCTTTAGATGATTCAGCTCTTAATACTTCGTATGCTACCACACCCTCTAAACTCTTCACAGAAGAATATTGCTCCAGCAATGAAAGATCTTCATCATTAATCAATGATCCTTTATCCTTCTTAAGACACAAGACCGTAAAGAAACTTTCTCCCACTTCCTGCAACGAAGCCATAGCTTTATTATCATCCAAAACCGAAGAAAAATCTTTTGAATTCAACGAATCCAAGGACAAACTCATTACACATCATATCAGCCATTTGATTAAACTCTACCAGGAACACCCGCGTCTTTGGGATCAATCCCATCCTGATTTCTGTGAAACCCAAGTATGTCGCAAGTCCTGGCAACAGATCACCGATCAATGGAATGAATACTGCAATAGAAAGTTTAGCACAGTCGAAGTACGCATACGTTTGGGTAATCTTTGTCAACGTTATTTACAGGAACAAGAACGTCTGACTTTAGAGGGAGAATTAGATGAGTTTGCCAAATTTCCCTACTACGAACAAATGAGATTTCTGGAACAACAAAAAACTCTGCAAAAAAGACGCAAACTCTACGAACAACAGAATGAGAAAATATTAGAAATTTATCAAAATTTTCCCTTGCTCTGGCATGTCAGCTGTTATAAGTTAAGACAGGCCAAAGAGAGAGCCCAGGCTTATGCTAGCATCAGTAAAGCTTTAAAAATATGTGGTATACATTTATCCTCAATGGGTGTTCAAAAGCGTGTACGTTCTTTGCGCAAGTGCTATCGTTTAGAGAAAATACGTTTTTTACATGCTCAAGTAGAGCAAAAACAATTTGAAACAGATTTTAGGCATTACGAGAGAATGGCATTTTTGCACAAGCACATAGAGCCATTTGTGTGTGGAAAGTGCGGTAAAATATTTGAGAAACTAGTAGGTTTTCGAGGTCACTTGGAGGAGGAAAATCATGGCACTGTACTGCAAGATAATGAAGAATGTAAAAGTGGGGATGAAAATGCTGGAGATGGAAAGTTCACAGAAAATGAATGGCAAGAAAAGAAAATTTCAACAGTTGAAAAAACTCAAGGCTTAGAAAGTCATCAAGTGAAAAATAAGTCCGAAAACCTCGTTCCTGTTGCCCGTAACTGCGATGAGGTGTTTTGTTCAGAATTGGAAAATTCTTCTGATATTTTACAGACATTTACTCCATTATCTACAACTCCAGCTTACGAATTAGAAACAACCGCTAGCAAAAGCAATCATACCGCCATTATTCAAGAGGTTTTAGTATTTCCTCCAAATACCACAGCCGAATCCATGACAAATTCTTTGTGCTTAGAAGATCAACTAATTGAGGAAATTATGGATGATATTACCAACGATGAAAAAACGGAAACTCTATCTTTAAATCATTTTAACGAATCGTTTACTAGTTGTAAGGAATGGAGTCCAAGTAGTTGTGTAACTGAAGAAAGTTCATGCATGAATGTTATAAATGCGGAACATATTAATATTTTGCAAAACGCTGATGTATCAACAGTACAAACTTTAGATGCTGGATATACAGAAACTAAAGCTGAAGAAAGGGAGCAGATTGCTATAGGGAATCATCCCACCCCCCTCTCTCCTCTAGTAGTTAAACTGCAATGTGCTGACTTTTCTTTGGATCTTAACTTAAACTCTGAGTTTTCCAAACATTGCAACATAAATTCTAACCCTAATGACAGCGACTTCGCTGACTTATCGACCACTCCCTTGCCCGATCATCAAATACATATAATGATTGGGCTATATCGTAAATATCCCCAACTTTGGAATCCCAATCATTTGGACTATAATTCACGAAAATTAAGACGGCAAGCCTGGTATCTACTTACAACGGAATTCAACACTGTCATAAATAAGCAATTCTCCTGGCGTACTATGCATCGAAAGCTAACGGACTATGCCAAGTACTACAAAAAACTTATAACCGATCAAGAGGACTATGAGCAATTGGAGAATAAATGGACGTTTTATGAGGATTTTAAGTTTTTGGATGATGTGATCGCAGTTCATAACGAACTACAACGTAGTGTCCATCATCCCGACAATATTTTCAAAATCATTGCCATTTACAAAACCCTGCCTCAGCTATGGGACATCAAGCATGCCGATTTTAATAAACGCTCGATGAAACAACGTAATTTTGAACTGATGTGCAATCGCTTACAAGATGAATACAATCTTCAACTGACAACAGAACGTCTGAAAAATCGCCTAATCGAATTACGAGCCCAATATAGAATAGCCAAAAAACAGCGCTTAAAATGTGAAAGAAACCAACAACATTTTACCAACGATTTTGAATTCTACGAGGCCATAAAATTCATTGATCCCCACATAGATCCTTTCATATGCGAGCTATGCAAAATGGATTTCAAAAAACTCACCGACTACAAAGAACATCTTAAACGCGTACATGAAAAGAAAATAACAGCAAAAACTTCTCCAGTTGCGCTAATACCTCATGAACCCGGTCTAGATAAGAGCTTGGAAAATATTTGTCATATATGCGGCTTAAAGTTTACCACACGCAGTAATTTAGCTCACCATGTTCGACGCCATGAGAACATACGAAACTATCAGTGTCCCATGTGTCCGAAAAAGTTTTTCGACTCCTATCCCCTAAAAGTGCACATAAGAAGCCATACCAAAGAATGTCCGTTTACGTGTGAAAAATGTGGTATGTCATTTGTGAGTGCCAGCAAATTGAACCTACATGCCAAACGGCATTACGATAAGAAAGACTACAAATGTGATTATTGCCCCAAGGCCTTCTATACGGGTTTTGAGAAGGATCGTCATGAAAAAAGACATCTTAATATTAGAGATAAGGTGTGTCCTATATGTGGCAAAGCCTTTGTAATGGGCTCATCGTACTATGCGCACATGATGCTGCACAACGATAAGAAACGTTTTGAATGCGACAAATGCAATATGAAGTTTGCTCAATACGCTGGCCTGTATAAGCACAAAAAAAGACATCATTCATAA
- Protein Sequence
- MESVSNHNNCNNNRQQFVVEDEQQQHLFQLSDHLKCGEVYTWLCAGELYAIECKLCEDQPLCPLSEFPQHMQVWHTDWEQNQENEDTYSDDNDDVEHYCEYNKPALPFTTENNDLFESNHQLENKRILQHEQEHGFHPRQNEEEILEPFEQVLIEQDNDTDSIQINDYINEQESLNEQQKPVTTLEEVTETRCKQTPQFNINNTDESNCKQRDLKSKITVKETELRYLEETTFSVKKLNVNHLTEQQYNEKSFDSEAIKDTFKPKPKNNEKYKINANNLNKIKINEALITENENDLAETSKTLQNSNKAPERVKQKLTQSTENKINLRSCAIKITNTKDIRSIQIETSENQTSETVNVEEPKNDKKFKFLKNIRQNGKKLKNVQKQTRNLKTVENNLKKTIQRYSERNKSERKIGETAKGTIKTEKNNLRFIKIQNLKNINSGQNNKKNSQTLIKTGKAKTLLKVNFKQLRRVKENQLVLTENKTTCKKSAKLEKYETQPSENTTVKLSKTQKKENETQLSENEIKIKRSTRKNYKPLAKTKENKSKLNEIRKFKLNESEIFKNKNETQQYNHIKTTGDKQLNENKLEQNENETEKTNEMDSQLSENLFVASAIKTNVIEDLKAKDKQKLYEIKTIFKLGKTKKNNDSLSDKPQIRKSLRNLGKSKEIITSDSRSLIKNRELGTKVKQLGEEEQNGMEQEEIIKADIGVCVNIVKLPNESKNFIKSEQITAVKRNPKKFSEELNQEELDKRKTQQLRRKIINSKNKKKILKLEQPKRSSKANSLKEKSETEDQTDLETASKSSSREQTFEITHDSFKDSDAASNSTLEDSTLSSLYVSNPYSPSKLSSEGYCSNRVEDETDLDSPFKSVNAEQTFETTENLYKESDAAFIKSLDDSALNTSYATTPSKLFTEEYCSSNERSSSLINDPLSFLRHKTVKKLSPTSCNEAIALLSSKTEEKSFEFNESKDKLITHHISHLIKLYQEHPRLWDQSHPDFCETQVCRKSWQQITDQWNEYCNRKFSTVEVRIRLGNLCQRYLQEQERLTLEGELDEFAKFPYYEQMRFLEQQKTLQKRRKLYEQQNEKILEIYQNFPLLWHVSCYKLRQAKERAQAYASISKALKICGIHLSSMGVQKRVRSLRKCYRLEKIRFLHAQVEQKQFETDFRHYERMAFLHKHIEPFVCGKCGKIFEKLVGFRGHLEEENHGTVLQDNEECKSGDENAGDGKFTENEWQEKKISTVEKTQGLESHQVKNKSENLVPVARNCDEVFCSELENSSDILQTFTPLSTTPAYELETTASKSNHTAIIQEVLVFPPNTTAESMTNSLCLEDQLIEEIMDDITNDEKTETLSLNHFNESFTSCKEWSPSSCVTEESSCMNVINAEHINILQNADVSTVQTLDAGYTETKAEEREQIAIGNHPTPLSPLVVKLQCADFSLDLNLNSEFSKHCNINSNPNDSDFADLSTTPLPDHQIHIMIGLYRKYPQLWNPNHLDYNSRKLRRQAWYLLTTEFNTVINKQFSWRTMHRKLTDYAKYYKKLITDQEDYEQLENKWTFYEDFKFLDDVIAVHNELQRSVHHPDNIFKIIAIYKTLPQLWDIKHADFNKRSMKQRNFELMCNRLQDEYNLQLTTERLKNRLIELRAQYRIAKKQRLKCERNQQHFTNDFEFYEAIKFIDPHIDPFICELCKMDFKKLTDYKEHLKRVHEKKITAKTSPVALIPHEPGLDKSLENICHICGLKFTTRSNLAHHVRRHENIRNYQCPMCPKKFFDSYPLKVHIRSHTKECPFTCEKCGMSFVSASKLNLHAKRHYDKKDYKCDYCPKAFYTGFEKDRHEKRHLNIRDKVCPICGKAFVMGSSYYAHMMLHNDKKRFECDKCNMKFAQYAGLYKHKKRHHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -