Pmel021696.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010003362.1:151826-168650[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0013 0.11 13.6 0.5 2 23 136 158 135 158 0.94 2 19 0.00061 0.049 14.7 0.3 2 23 173 195 172 195 0.95 3 19 2.4 1.9e+02 3.4 2.7 1 23 200 223 200 223 0.92 4 19 0.001 0.082 14.0 0.3 2 23 236 257 235 257 0.97 5 19 0.39 32 5.9 0.1 2 23 345 367 344 367 0.93 6 19 0.18 14 7.0 0.5 2 23 382 404 381 404 0.92 7 19 0.0072 0.59 11.3 1.4 1 23 409 432 409 432 0.95 8 19 0.057 4.6 8.5 2.2 1 23 444 466 444 467 0.95 9 19 0.00085 0.069 14.2 4.0 2 23 480 502 479 502 0.94 10 19 1.8 1.5e+02 3.7 0.1 1 12 510 521 510 525 0.86 11 19 0.00088 0.072 14.2 0.2 2 23 650 672 649 672 0.96 12 19 0.002 0.16 13.1 0.0 2 23 687 709 687 709 0.91 13 19 2.4 1.9e+02 3.4 2.7 1 23 714 737 714 737 0.92 14 19 0.001 0.082 14.0 0.3 2 23 750 771 749 771 0.97 15 19 0.64 52 5.2 1.8 1 15 785 799 785 801 0.87 16 19 0.00066 0.054 14.6 1.3 1 23 834 856 834 856 0.97 17 19 0.0034 0.28 12.3 1.4 1 23 918 940 918 940 0.97 18 19 0.00023 0.019 16.0 1.9 1 23 950 973 950 973 0.97 19 19 7.2 5.9e+02 1.9 0.1 1 13 977 989 977 991 0.83
Sequence Information
- Coding Sequence
- ATGGCATCATTGCAATGCCAAAAAAGGCGAAAACTTATAACAAACAATAAAATAAAAATAGAAACACAAGGTGTTGTTCAAAAGATCAAGATAAAAGAGGAATTAGAAGCTTCAACTGAAATTTGTAACGAACATATTTCCAGCCAACCAATAGAAAATAAAAAAGAATTTTCAAATGAACCAAATAAAGGGCAAGGTGACAGGATTAAAAATGGATTAGATAACCTCAATGTAATTTACATCGAAAGTTCCGATGATTCTAATGATACTGAACAAATTAAAGGATCGCAAGCTTTAGTAGTTAATAGAAATATCGATGACATTAAAATTGAAAATGAAACTCTAACGGAATATATTGTTCAAAGTTCGCCGCATGAGCAGGACAAACCTATATCTTCCCAAGTAGTGTGTGATATTTGCGGTAAAAAGTTACCAAACAAAAAGGCGTTATTTTCTCATCGTTACAGAAAACACAAGGATGTCAAACGAGTGAAACAAGTTAAAGGCCAAGCGAAAGTTTGTCCCTTTTGTTTTAGAGTATTTAAAAGGCCGCAAGATCTACTATATCATATCGATTCATTACATTCTGAAGTAACTCACAATTGTCCATACTGTGATCACAATCTCCTTACCAAAAATGCTCTCTATCAGCATATTGTACGTAAACATCGTGATATCAAGAGACGCAAACGAGGTATCGAAGGCAAATGTTCTCAATGTGGCGAAATCTTTGAATCTTTAAGAAAATTAAAATCCCACAGAGCTATTCATCGTGTTAAAAAAGGCTCAATTTCAGAAGCGAATCTGTGGTTTCAATGGCAAGGTGACAGGATTAAAGATGGATTAGATAACCTCAATGTAATTTACATCGAAATTTCCGATGATTCTAATGATAATGAACAAATTGAAGGATCGCAAGCTGTAGTAGCTAATAGAAATATCGATGAAATTAAAATTGAAAATGAAACTCTAATGGAATATATTGTTACAAGTTCGCCGCATAAGCAGGACAATCCTAAATCTTCCTCGGTAGTGTGTGATGTTTGCGGTAAAATCGAGCCAAACAAAAGGGCGTTATTGTCTCATCGTTACAGAAACCACAAGGATTCTAAACGACTGAGACGAGCTAAAGGCGAAAAAGTAGTTTGTTCTTTTTGCTCTAGCGTTTTTAAAAGGAGTCAAGATTTACGATTTCATATCGATTCATTACATTCTGACACAATTCACAATTGTCCATACTGTGATTACTATCTAAATACGAGAAATGCTCTCTACAAACATATTGCAAGTAGGCATCGCGATATCAAGAGACACAAATCAAAAAAAGAACACAAATGTTCTCAGTGTGGCGAAATCTTAGAAACTGTAAGAAAGTTAAAAACGCACACAGCTGTTCATCATGTGAAAAAACGTCCAGTTAAAGACGCGAGTTGGTTGCAATGTAAGGACTGTGGTCAACAATTTAAATCGAGAGGGTCTTTACATTCACATCGTTTTAGAAAACACAACAATAAGAAAAAATGCCTTCATCAATGTGATTATTGTGAATTAATGTTTCCTTCCTATATGTTACGAAATTTTTTAACAAACAAGAAAATAAAAATAGAACCACAAGTTGATCAAAGAATCAAGATAAAAGAGGAATTAGAAGCTTCAACCGAAATTTGTAACGAACATAATTGCAACCCAACAATAGAAATTAAAAAAGAATTTTCAAATGAACCAAATGAAGGGCAAGGTGACAGGATTAAAGATGGATTAGATAACCTCAATTTAATTTACATCGAAATTTCCGATGATTCTAATGATAATGAACAAATTGAAGGATCGCAAGCTTTAGAAGCTAATAGAAATATCGATGAAATTAAAATTAAAAATGAAGCTCTAACGGAATATATTGTTACAAGTTCGCCGCATGAGCAGGACAATCCTAAATCTTCCCCGGTAGTGTGTGATATTTGCGGTAAAAACTTGGCAAGCAAAAGGTCGTTATATTCTCATCGTAACAGAATACACAAGGATGTCAAACGAGTGAAACGAGTTAAAGGCCAAAAAAGAGTTTGTCCCTTTTGCTCTAGAGTATTTATCAGGCCGCAAGGTCTACAATATCATATCGATGCAGTACATTCTGAAGTAACTCACAATTGTCCATACTGTGATCACAATCTCCTTACCAAAAATGCTCTCTATCAGCATATTGTACGTAAACATCGTGATATCAAGAGACGCAAACGAGCTATCGAAGGCAAATGTTCTCAATGTGGCGAAATCTTTGAATCTTTAAGAAAATTAAAATCCCACAGAGCTATTCATCGTGTTAAAAAAGGTTCAATTTCAGAAGCGAATCTGCGGTTTCAATGTAAGGACTGTGGTCAACAATATTATGACGCAACTCACAATTGTCCATGCTGTGATCACAATATACCTACCAGAAATGATTTCTATCAGCATATTGTACGTAAACATTGTGATATCAAGAGACACAAATCAAAAAAAGAACACAAATGTTCTCAGTGTGGCGAAATCTTTGAATCATTAAGAAAATTAAAATCGCACACAGCTGTTCATCGTGTGATAACAGATCCAATTAAAGACGAAAATTGGGTTCAATGTAAGGACTGTGGTCAACAACATTCTGACGCAACTCACAATTGTCCATGCTGTGATCACAATGTACCTACCAGAAATGATTTCTATCAGCATATTGTACGTAAACATTGTGATATCAAGAGACACAAATCAAAAAAAGAACACAAATGTTCTCAGTGTGACGAAATCTTTGAATCTATAAAAAAATTAAAATCGCACACAGCTGTTCATCGTGTGATTTCAGAAGCGAATCTCTGGTTTCAGTGTATGGACTGTGGTCATAGACTGACATCGAAAAGTGCTTTACGTACACATTATTTAAGAATACACGGCGATGAGCATAAATGTGAATATTGTGAATTACTATTTCCTTCTAATAAGTTGTAA
- Protein Sequence
- MASLQCQKRRKLITNNKIKIETQGVVQKIKIKEELEASTEICNEHISSQPIENKKEFSNEPNKGQGDRIKNGLDNLNVIYIESSDDSNDTEQIKGSQALVVNRNIDDIKIENETLTEYIVQSSPHEQDKPISSQVVCDICGKKLPNKKALFSHRYRKHKDVKRVKQVKGQAKVCPFCFRVFKRPQDLLYHIDSLHSEVTHNCPYCDHNLLTKNALYQHIVRKHRDIKRRKRGIEGKCSQCGEIFESLRKLKSHRAIHRVKKGSISEANLWFQWQGDRIKDGLDNLNVIYIEISDDSNDNEQIEGSQAVVANRNIDEIKIENETLMEYIVTSSPHKQDNPKSSSVVCDVCGKIEPNKRALLSHRYRNHKDSKRLRRAKGEKVVCSFCSSVFKRSQDLRFHIDSLHSDTIHNCPYCDYYLNTRNALYKHIASRHRDIKRHKSKKEHKCSQCGEILETVRKLKTHTAVHHVKKRPVKDASWLQCKDCGQQFKSRGSLHSHRFRKHNNKKKCLHQCDYCELMFPSYMLRNFLTNKKIKIEPQVDQRIKIKEELEASTEICNEHNCNPTIEIKKEFSNEPNEGQGDRIKDGLDNLNLIYIEISDDSNDNEQIEGSQALEANRNIDEIKIKNEALTEYIVTSSPHEQDNPKSSPVVCDICGKNLASKRSLYSHRNRIHKDVKRVKRVKGQKRVCPFCSRVFIRPQGLQYHIDAVHSEVTHNCPYCDHNLLTKNALYQHIVRKHRDIKRRKRAIEGKCSQCGEIFESLRKLKSHRAIHRVKKGSISEANLRFQCKDCGQQYYDATHNCPCCDHNIPTRNDFYQHIVRKHCDIKRHKSKKEHKCSQCGEIFESLRKLKSHTAVHRVITDPIKDENWVQCKDCGQQHSDATHNCPCCDHNVPTRNDFYQHIVRKHCDIKRHKSKKEHKCSQCDEIFESIKKLKSHTAVHRVISEANLWFQCMDCGHRLTSKSALRTHYLRIHGDEHKCEYCELLFPSNKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -