Pmel005491.2
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000519.1:262060-279799[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 0.25 12.5 0.4 1 23 378 401 378 401 0.95 2 12 7.6e-06 0.00062 20.7 1.1 1 23 406 429 406 429 0.96 3 12 6.5e-06 0.00053 20.9 3.7 1 23 434 456 434 456 0.97 4 12 0.068 5.5 8.2 5.1 2 23 463 484 462 484 0.95 5 12 0.0034 0.28 12.3 2.7 2 23 492 514 492 514 0.95 6 12 0.026 2.1 9.6 1.4 1 23 520 543 520 543 0.95 7 12 0.013 1.1 10.5 1.0 2 23 554 576 553 576 0.94 8 12 2.6e-07 2.1e-05 25.3 0.7 1 23 604 626 604 626 0.98 9 12 2.8e-06 0.00023 22.1 1.8 1 23 633 655 633 655 0.96 10 12 0.00023 0.019 16.0 0.2 3 23 663 683 662 683 0.97 11 12 0.01 0.82 10.9 1.3 1 23 692 714 692 714 0.98 12 12 0.0011 0.089 13.9 2.7 1 23 720 743 720 743 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTTGTCGCACTTGTGCCAAATGTGATTTCGATAATGAGAGTCAATGGTTTGATTTATTTAATGCTCCTCGTTGGCAACTTGAAACAGAACGCATACATTTGGAATTGAATGCTTGGAAAATAAAGATTTCGTGCAACGATGGATTACCGCAAAAAATTTGCACCGATTGTTTTTCAAAATTTTGCACAGTTTTCTCATTTCGTCGGCAATGTCTGGAGGCACAGACGATATTAAGCAATATATTCGATAAAATCGATACACAAAGTATGCAAGATGATGAAGTTTTTGAGGGTTTTGCAAATGAACATGATAATGATTTAATAAATACTATAAAAACTGCAACAAACAACTCCATAGGGACAGTAGCAGCAATTGAAGCAGCGACAACAGCAGCAACAAATGCAAAAGTGGTAGAACATATAAAGTCAATTGAGCAAACATTAGACACAAAAACAGAAAAGAGCACAACCACTAGTAGTAGTAGTAGTAGCAGCAACAGCAGCAGCAGCAGTAATAATGAAAACATTGTAAATTTAAGCAAAATTTTAAGTATTAAAAATCTAAATAACAACACCGAGGTTTCATTTAGAACCATAACAAAATTACCAAATACTGCCGTTTTAGAAAACGATAATAAAAACAAACATTTTAATCACGTCTTAGAAGAAGAATCCGAAAATATTAATAATAACACCAACAACAAAAAAAATATTAGAAATAATAATGAAGATTATAATGACGAAGTTAAAAATACCGCCACCAGTAATCTTACTACTAACGAAGGAACAACAACTATACTACAAGAAGATACCAACGATTTAGATGATGATAATGATTTAATTGAAGAACTTATTGAAGAACTAGACATAATAGAAGAAATCGCCGATGAAGTCCGAAATGAGGGCGAAATCGAAGACTTTCGTCAAAATGCTGAAAATATACCAAATGGAAATATGACTCAGCCCTTGGAAAACTACAACGAAGATGATCATTTAGCTGATAACTTACGAATAACGTTTGAATGTAAATATTGCTACAAATGGAAGAATAGTGTAACGGAAAATTTTCTTACCCAACAAGATCTTTTGGCCCACATCACTAAATTGCACAGTTCAGAACAGCCTTATAATTGTCCGTATTGTAAGCAAATGTTTATGGATGCCGCTTCCAGAACTACACATTTGAAGGGCGAACACAGTCAAAAGGTGTACGAGTGCGAGACGTGTGGCAAGAAATATGCTGATAAATTTAATTTAAAAAATCATGTGGAAAAGTATCACAGTGGCACCGATTTCGATTGTACACTGTGTGGTAAGAGTTTTTGTTCGAGTAAAAGTTTAAATTATCACATGAAATGGCACAATCCGGAGGAACAATTGAAGTGTAGCTACTGTGATCGTTTGTTTATAAATCAACGACATTTGAGATGTCATGAGGAGACTCACACGGGATTTCGCAGTCAGGAAGTGTGTTCGTTTTGTGGTAGAAACTTTTTCCATTTAAAAACTCTTAGATGGCATATATATCGACAACATGGCGGTGAAAAACCATACAAATGTGCCAGATGTACAGAAGTTTTTACGTCATATTTTGAAAAACGTTTGCATATGCTGGAGTATCATTTGGATAATTTAACGTTAATTGAAAAAACTGAGTGTATGCTGTGTCACAAGCGTTACGAAAACGAAATCAAGCTGAGAGATCATATGTTAGAAGATCATAAGGAAAATAAGGGAGCCGTTAAGATAACCAACAACAAAAGAGTCATAATGAATAAGAAACCGAAAAGCTTTACAGGAATATTCCAATGTGAAAAATGTGATAAAAGATTTAATATGAAATCGGCTTTGGAAAGGCACATGGCTGTACATTCCACAGAGGGAAGACCACATGCCTGTCCTGAGTGTCCAAAACGTTTCAAACGTTCTCAGGATATGAAGTGGCATCTGAAGACACATTCCTCAGAGAAGTCAAATATTTGTGATGTTTGCGGCAAAGGATTCGCTTTGAAATATGTTTTAACTCAACATCGTAGAAGTCATGAAGTTTTAGTTTTAGAAAAGAACTTTACTTGCACCACCTGTGGTCGTTCATATCTTTTCGAAAAATCGCTGCGTTTGCACGAGCGCATCCACAGTGGCAAAACCTATTACAAATGTGACTTGTGCGGTGATACGTTTGTTACACATATTAAATTTAAATGGCATATGAAAAAAATGCATGACGAGGAAGAATTGGCTGCTACAAATTTAAGTTCTAAAAATAAAACTAAAACTAACATTGAGCTGCCATTGGATGATTTGGTCAATATTGTGATTACTTAG
- Protein Sequence
- METCRTCAKCDFDNESQWFDLFNAPRWQLETERIHLELNAWKIKISCNDGLPQKICTDCFSKFCTVFSFRRQCLEAQTILSNIFDKIDTQSMQDDEVFEGFANEHDNDLINTIKTATNNSIGTVAAIEAATTAATNAKVVEHIKSIEQTLDTKTEKSTTTSSSSSSSNSSSSSNNENIVNLSKILSIKNLNNNTEVSFRTITKLPNTAVLENDNKNKHFNHVLEEESENINNNTNNKKNIRNNNEDYNDEVKNTATSNLTTNEGTTTILQEDTNDLDDDNDLIEELIEELDIIEEIADEVRNEGEIEDFRQNAENIPNGNMTQPLENYNEDDHLADNLRITFECKYCYKWKNSVTENFLTQQDLLAHITKLHSSEQPYNCPYCKQMFMDAASRTTHLKGEHSQKVYECETCGKKYADKFNLKNHVEKYHSGTDFDCTLCGKSFCSSKSLNYHMKWHNPEEQLKCSYCDRLFINQRHLRCHEETHTGFRSQEVCSFCGRNFFHLKTLRWHIYRQHGGEKPYKCARCTEVFTSYFEKRLHMLEYHLDNLTLIEKTECMLCHKRYENEIKLRDHMLEDHKENKGAVKITNNKRVIMNKKPKSFTGIFQCEKCDKRFNMKSALERHMAVHSTEGRPHACPECPKRFKRSQDMKWHLKTHSSEKSNICDVCGKGFALKYVLTQHRRSHEVLVLEKNFTCTTCGRSYLFEKSLRLHERIHSGKTYYKCDLCGDTFVTHIKFKWHMKKMHDEEELAATNLSSKNKTKTNIELPLDDLVNIVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045511;
- 90% Identity
- -
- 80% Identity
- -