Pmel014352.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010001672.1:39141-40917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.9 1.6e+02 3.7 0.6 2 23 266 288 265 288 0.91 2 10 2.3 1.9e+02 3.4 2.7 6 23 297 314 292 314 0.97 3 10 8.3e-06 0.00068 20.6 1.7 1 23 320 343 320 343 0.97 4 10 3.4e-07 2.8e-05 24.9 1.7 1 23 349 371 349 371 0.98 5 10 4.1e-05 0.0033 18.4 0.1 1 23 378 401 378 401 0.97 6 10 0.013 1.1 10.5 0.3 2 23 406 427 406 427 0.96 7 10 0.00012 0.0096 16.9 0.0 1 23 435 458 435 458 0.93 8 10 0.0014 0.11 13.6 0.2 1 23 465 488 465 488 0.96 9 10 1.4e-06 0.00011 23.0 2.8 1 23 494 516 494 516 0.98 10 10 7.2e-05 0.0059 17.6 6.7 1 23 522 545 522 545 0.98
Sequence Information
- Coding Sequence
- ATGTCTTTAGTACTATGTTGTTGTTTGTGTTGCACACCATGCAGTGAATATAAATTGTTACAGAATGATTCGGGAGAATGTAATGAATTCTATGAAATTACAGTCAAATATTTTGATCCTATGTTGTTAACTGAATACATCAACAAAAATTATGCTAAGGATAACATACTATGCCAGGACTGTTGGTTGCATATAAAAGACTTTCATGATTTTCATCAGACTGTAATAAAGGCACGATCTTTGCAAGAGAATACTGAAATGAAGCAATTACCATTGCAAATTAAATTAGAAGTTGAGCAACAGATGAATACAAGGTTAATAAGTGATAATTACAATGAACAAGATTTCAGTGATGAGGAGTTGACACATTTTGATATGTTAATTAAAAATAATTCGGAAGATGATAACGATGCCTTGGGAAATTATAATAAAGACATCAGTGATAACGATGATGAGGAAGACCAAAAGCCCTTAATTGAATTAACAAAAATCAAGAATTATATTAAGCACAGTAAGAAAAATGATGAATCAACAAAAGATAAAGAAGCGGAAAATTTGATTGAAAATCAAAAGCGTAAATTTCGTAGAGGTCGTAAACCTAAAGATACCTCGAAATTGTTTGTAAAAGACAATTGTAATGAGTGCGAAGTAGTAGATGAAACTTTAGAAAAACAACCAAGAAAAAAGAGAAAACTTAAAGATTCGGAAAAGCCTAAAAAAAACTCACGTATTAATTCTGGCCTAGAAAAGGGAAGAGAATCGGATGAATTTATAGCGGAATGGAAACCACTACTGGAATGTGATCTCTGCAATGACACTTTTAAAATTTTTGATTTATTAAAAGGACACTTCAAAGAAAAGCATAATGCCAGATGTTATATTAAATGTTGTGAACGTAAATTTTATCGTCGCTGTGTTCTAGTGGACCATATACGTCTACATATTAATCCAGAGACCCATAAATGCGATATCTGTGGTAAGCCTAGTTCCAGCAAGTATAATCTTAAACTACATAAAAAAATTGTGCATGAAGAAACGGAGCAGTTTGAATGCGAGGTTTGTCATAGAAGTTTTAATCAAAAACCCAATTTGGAGCGACATTTATTAACACATGTAACGGGCAATAAAGATTTTATTTGTAACGAATGTGGCAAGGGATACGTTTTGGAAGTCCAACTAAAATCGCACATCAAAACGGTTCATAGTGATAATCGTGTATGTGATCAATGTGGTAAAACGCTTCACGGTATCGGGGCACTAAAGAAACATTTAATGGAACACGCTGGAGTTGAAAAACCTAAGTATCCTTGCGAAGAATGTGGTGCCCAATTAAGATCACGAGGTAATTTAAGACGTCATATAGCAGCCTATCATAACGATGGCTCGACTATATATGTGTGTAGCATTTGCGGTAAAGTTGCTGCCAGTGAATATGGTCTATTGACACACAAAAAGCACGTCCATCAAGAGAAACGTAAGCATAAGTGTACATATTGTGATAAGGCGTTTAAACGACCTAAATTTTTACGTGAACACATTGCCACACATACCGGAGAGGATCTGTATCAGTGTCCCCACTGTCCGCAAACATTTAAAGTTAGTTCGAACATGCATCATCATCGTAAAAAAGCTCATCCTGTTGAGTTTGAAGAGGGAAGAAAAAATCGTTTACAACTCCGCAAAGTTGATATAACACAAGTTACAAATCAAGTTGTAATATAA
- Protein Sequence
- MSLVLCCCLCCTPCSEYKLLQNDSGECNEFYEITVKYFDPMLLTEYINKNYAKDNILCQDCWLHIKDFHDFHQTVIKARSLQENTEMKQLPLQIKLEVEQQMNTRLISDNYNEQDFSDEELTHFDMLIKNNSEDDNDALGNYNKDISDNDDEEDQKPLIELTKIKNYIKHSKKNDESTKDKEAENLIENQKRKFRRGRKPKDTSKLFVKDNCNECEVVDETLEKQPRKKRKLKDSEKPKKNSRINSGLEKGRESDEFIAEWKPLLECDLCNDTFKIFDLLKGHFKEKHNARCYIKCCERKFYRRCVLVDHIRLHINPETHKCDICGKPSSSKYNLKLHKKIVHEETEQFECEVCHRSFNQKPNLERHLLTHVTGNKDFICNECGKGYVLEVQLKSHIKTVHSDNRVCDQCGKTLHGIGALKKHLMEHAGVEKPKYPCEECGAQLRSRGNLRRHIAAYHNDGSTIYVCSICGKVAASEYGLLTHKKHVHQEKRKHKCTYCDKAFKRPKFLREHIATHTGEDLYQCPHCPQTFKVSSNMHHHRKKAHPVEFEEGRKNRLQLRKVDITQVTNQVVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259112;
- 90% Identity
- -
- 80% Identity
- -