Basic Information

Insect: Phyto melanocephala
Gene Symbol: Clamp
Assembly: GCA_941918875.1
Location: CALNXE010002100.1:78004-80318[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.5e-05 0.0012 19.8 2.6 1 23 138 160 138 160 0.99

2 7 1.1e-05 0.00089 20.2 1.0 1 23 443 465 443 465 0.98

3 7 6.5e-06 0.00053 20.9 0.1 1 23 471 493 471 493 0.99

4 7 4.4e-06 0.00035 21.4 3.2 1 23 499 521 499 521 0.99

5 7 2.5e-06 0.00021 22.2 0.4 1 23 527 549 527 549 0.98

6 7 2.1e-06 0.00017 22.4 0.4 1 23 555 577 555 577 0.98

7 7 0.00012 0.01 16.9 0.2 1 23 583 605 583 605 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.5e-05	0.0012	19.8	2.6	1	23	138	160	138	160	0.99
2	7	1.1e-05	0.00089	20.2	1.0	1	23	443	465	443	465	0.98
3	7	6.5e-06	0.00053	20.9	0.1	1	23	471	493	471	493	0.99
4	7	4.4e-06	0.00035	21.4	3.2	1	23	499	521	499	521	0.99
5	7	2.5e-06	0.00021	22.2	0.4	1	23	527	549	527	549	0.98
6	7	2.1e-06	0.00017	22.4	0.4	1	23	555	577	555	577	0.98
7	7	0.00012	0.01	16.9	0.2	1	23	583	605	583	605	0.96

Sequence Information

Coding Sequence: ATGATGGAAGATATAACAAAAAATATAATATTTACAAATGCTCTTGGAGCAAATGTGCAACCTATACAGTACCAAACAGCTGACGGCACCATATTAAAGCAACCTAAAATTGAAGGACAAAAGGAACAGCCCACTTTTTATTATACTACAACAAATGGCAATGGAACCACCGTAAACTTGGCCCAACTGGCTACAGATGATAATAAGACCTGCTATATAGCGCAGCCCGTGGGAGGCTATAATTATGCCTTAGTTAATGGCATGCAATTGAATCAATTAAATCAAGGTGGTACAATTGGTATAGCCACCCTAGATTCACAGGGTAGATTACAAATAGTAAATCAAAATAAACCAATAGCTGCTTCTTTACAAACTATATCGCCTTTACAAAATACTATATCGAATATAAGTTTTAAATGTGACGTTTGTGGTTTAATGTTCTCCCATTTGGCTTTACTAAATCATCATAAACGTATACATGCTCAGGACGGTAGCGAGCAACAGCATCAACAAGCACAACAGCAAGAGGCCATTGTGGTAAATGCCCAAGGTTTAGTGCAGACACAAAACATTATTACCGAAAATGGACAAATGGGACAAATACAAATTGTGGCTACAGAGGCTTTAGAACCAGCAACAGTTATGCAACAACAACAACAACAGCAACAACAATTACAACAACAGCAGCAAAATCAACAGCAGCACCAGCAACAGCAATCTAACGAAGTACAAATAAATAACAACAGCACCGTAGGAAAATCGTTAAAACTAGAGCAGAGCAAATGTTCCACATGTGGTGTGCAAATTCTCCAGCCAGTCAAACGTAAAGGTCCCAAAATAATTCGTTGTGATTCATGTTTACAGAATGATCAAGCCCAACAGGCTGCTTTAGCTGCCGCTCAACAAGTAACCCCTACACAAATATTTGTAGCACCGGATGGTGAAATTAAATTTGAAATGAATGAACTGCAAAGTGGTAATTCTGAATCATCGATGGATTCATTAAATGCCCAAAATATGTTACAGAATCATTTACAACCAGTGCAAATAATTGCATCAAATGCTCAAGGACAGCAAGTGCATCTTGTAACCCAGACAAACAATACGCAGGCAATAACAACAGTATCCAATTCCTCAAATATAAAACGTGAAAATTCAGAAACAGCGTCATCGTTGCCGCCGGCTAAGAAAAAGTTTACACAACCTAAGGTGACAAAATGTAATAAGTGCAATGGATCAGGTATGGTGTATGCTGGCTCGGGAGCACCAGCCTCAAAGTCGCAGTGTTCAACACAATCGTCTGTTAAAACGGAAAATCCCAAACCTTTTACGTGTAATATCTGCGGTGGTACATTTTCGCGTTACTCAAGTTTGTGGTCCCATAAAAAGCTGCACAGTGGTGAGAAAAACTATAAGTGTACGATATGTGGTTTAGCGTTTGCAAAGGCAGTGTATTTAAAAAATCATGCACGCATACACACTGGAGAAAAGCCATACAAATGTCAAACTTGTGGAATGCaattctctcagtcaccccatttaaaaaatcatgaacgtacgcatagcggcgaacgaccctacgtgtgcgaagtgtgcgataaaggttttgctcgtcatgctaccttgtggaatcatagacgcatacataccggggaaaaaccctataaatgtgatatatgcggttcggcattttcacaagcggctcatttgaaaaatcatgccaaagtacattctggtgagaaacccttcaaatgtgatatttgctcggcagcatttgctgatcgatttgctttaaaacgtcatcgAGGTATACATGAGAAATATGGTCAAACTGCACCCCGACAGCCAGCACAAGTGCCACAATCACAACAAAATCAGCAAGATAATGGAGGCAATAATCGTCAAAAGGTTGTTATACAAAAACAAGAATTGCCCGATATGGATGATGATGCTCAACATGAAGTTATAATATCCGGTTTATAG
Protein Sequence: MMEDITKNIIFTNALGANVQPIQYQTADGTILKQPKIEGQKEQPTFYYTTTNGNGTTVNLAQLATDDNKTCYIAQPVGGYNYALVNGMQLNQLNQGGTIGIATLDSQGRLQIVNQNKPIAASLQTISPLQNTISNISFKCDVCGLMFSHLALLNHHKRIHAQDGSEQQHQQAQQQEAIVVNAQGLVQTQNIITENGQMGQIQIVATEALEPATVMQQQQQQQQQLQQQQQNQQQHQQQQSNEVQINNNSTVGKSLKLEQSKCSTCGVQILQPVKRKGPKIIRCDSCLQNDQAQQAALAAAQQVTPTQIFVAPDGEIKFEMNELQSGNSESSMDSLNAQNMLQNHLQPVQIIASNAQGQQVHLVTQTNNTQAITTVSNSSNIKRENSETASSLPPAKKKFTQPKVTKCNKCNGSGMVYAGSGAPASKSQCSTQSSVKTENPKPFTCNICGGTFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDICGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHEKYGQTAPRQPAQVPQSQQNQQDNGGNNRQKVVIQKQELPDMDDDAQHEVIISGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01162455;
90% Identity: iTF_01259422;
80% Identity: -