Basic Information

Insect: Phyto melanocephala
Gene Symbol: -
Assembly: GCA_941918875.1
Location: CALNXE010001672.1:53931-55681[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0045 0.36 12.0 0.9 2 23 255 277 254 277 0.93

2 10 0.11 9.1 7.6 0.2 6 23 286 303 286 303 0.98

3 10 9.3e-06 0.00075 20.4 1.7 1 23 309 332 309 332 0.97

4 10 1.5e-07 1.2e-05 26.1 1.8 1 23 338 360 338 360 0.99

5 10 4.7e-05 0.0039 18.2 0.1 1 23 367 390 367 390 0.97

6 10 0.03 2.4 9.4 0.2 2 23 395 416 395 416 0.96

7 10 0.00045 0.037 15.1 0.3 1 23 424 447 424 448 0.93

8 10 0.0035 0.28 12.3 0.1 1 23 454 477 454 477 0.95

9 10 1.8e-06 0.00015 22.6 1.7 1 23 483 505 483 505 0.98

10 10 0.00024 0.02 16.0 6.5 1 23 511 534 511 534 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0045	0.36	12.0	0.9	2	23	255	277	254	277	0.93
2	10	0.11	9.1	7.6	0.2	6	23	286	303	286	303	0.98
3	10	9.3e-06	0.00075	20.4	1.7	1	23	309	332	309	332	0.97
4	10	1.5e-07	1.2e-05	26.1	1.8	1	23	338	360	338	360	0.99
5	10	4.7e-05	0.0039	18.2	0.1	1	23	367	390	367	390	0.97
6	10	0.03	2.4	9.4	0.2	2	23	395	416	395	416	0.96
7	10	0.00045	0.037	15.1	0.3	1	23	424	447	424	448	0.93
8	10	0.0035	0.28	12.3	0.1	1	23	454	477	454	477	0.95
9	10	1.8e-06	0.00015	22.6	1.7	1	23	483	505	483	505	0.98
10	10	0.00024	0.02	16.0	6.5	1	23	511	534	511	534	0.98

Sequence Information

Coding Sequence: ATGTCTTATAAACAATGTTGCAGTTTATGTTGCACAGCGTGCTGTGAATATAAAATGTTGCAAAACGAGGCAGGAGATAGCAACGAAATTTACGAAATAACAGTAAAATATTTTGATCCAATGTTACTTACAGAAGAAGAAAATACAAAATATGATCATATAGTGAAGGTTTTGTGTCAAGATTGTTGGTATCACATCAACGATTTTCATGAATTTCAACAGAATGTTATTTTAACCAGGAATTCACTAGAAAGGACTACAAAAGAGCTAGTTCAGCTAGAAGTTGATGTTAAACAAGAAAATGGTCAAGACGATAAATCACCTTGGCAAGACAAGAAAAGTTACTTGAATGAAAGCGTTAACGAAGATCAATGTTTTGAAGATGTTTATGTAAATAATTTTGAGTCGGATTTTGATGACTTGGCAACAGCCGATATGGAAGATGACGACGAAAAACCTTTAATATCACTGACGAAACATCACAATGACAACAAAAGAACTAAATTAATGGAAAAAATAAACTTAGAAAATTTGGAGACAAGTAAAATGGAGGAAAAACCTAGATCTCGACGTGGTAGAAAACCAAAAAATTCTAGTAAAGAAGATACAATTTCAGATAAACATAATGAACAGTTAGAAGAAAAACAATTGAACAAAAGGAAAAAGGCTAAACTTTCAGAGGATAGTAAAAAAGATACATCGAATTTCGCAGAAAAGGGAATAGAATCGGATAACTTTATAGCTGAATGGAAACCAGAATTAGAATGCGATATCTGTGGTGAAACTACAAAAAGTTTTCAAAAATTAAGGCAGCACTTTAAGGAGCAACACAAAACTAGAGGTTATATTAAATGTTGTGAGCGCAAATTTTATCGTCGTTATGTGCTGGTTGACCACATACGGCTGCATCTTAATCCAGAGATGCATAAATGTGAAATTTGTGGTAAACCCAGTTCAAGTCAATATAATCTCAAGTTGCACAAAAAAATTATGCATGAAAATACTGAACAATATGAGTGTGAAATTTGTCACAAAATGTTTAACCAAAAACCCACCTTAGAGCGACACATGCTTACACACGTTACAGGTAGTAAAGATTTTGCTTGCCAAGAGTGTGGCAAAGCATATGTTCTTGAAGTGCAACTTAAATCTCATATTAAAACGGTGCATAATGTTGATCGTGTCTGTGATCAATGTGGCAAAACTATACATGGTGTAGCAGCTCTAAAAAAACACCTAATGGAACACGCAGGCATCAAAAAACCTAAATTTCCTTGTGAAGAATGTGGAGCCGAACTAAATTCCCGAAATTCTTTAAGACGTCATATGGCGGCATTCCATCATGATGGTTCTACTATTTACGTATGTGGTATATGCGGTAAAGTAGCAGCTAGTGAGAACGCCCTGTTAACACACAAGAAACATGTTCACGAAGAAGAACGAAAACATAAATGTACATATTGTGATAAAGCGTTTAAAAGACCTAAAGTATTACGTGAACATATTGCAACTCATACAGGTCAAGACCTTTATCAGTGTCCCCACTGTCCGCAAACTTTTAAAGTTAGTGCTAATATGCATCATCATCGCAAAAAGATGCACCCGATAGAATGGGAAGAAGGAAGAAAAAATCGACTACAATTACCAAAAGTTAATATTAATCAAGTTAAAAATCAAGTTGTTATATAA
Protein Sequence: MSYKQCCSLCCTACCEYKMLQNEAGDSNEIYEITVKYFDPMLLTEEENTKYDHIVKVLCQDCWYHINDFHEFQQNVILTRNSLERTTKELVQLEVDVKQENGQDDKSPWQDKKSYLNESVNEDQCFEDVYVNNFESDFDDLATADMEDDDEKPLISLTKHHNDNKRTKLMEKINLENLETSKMEEKPRSRRGRKPKNSSKEDTISDKHNEQLEEKQLNKRKKAKLSEDSKKDTSNFAEKGIESDNFIAEWKPELECDICGETTKSFQKLRQHFKEQHKTRGYIKCCERKFYRRYVLVDHIRLHLNPEMHKCEICGKPSSSQYNLKLHKKIMHENTEQYECEICHKMFNQKPTLERHMLTHVTGSKDFACQECGKAYVLEVQLKSHIKTVHNVDRVCDQCGKTIHGVAALKKHLMEHAGIKKPKFPCEECGAELNSRNSLRRHMAAFHHDGSTIYVCGICGKVAASENALLTHKKHVHEEERKHKCTYCDKAFKRPKVLREHIATHTGQDLYQCPHCPQTFKVSANMHHHRKKMHPIEWEEGRKNRLQLPKVNINQVKNQVVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -