Pmel019439.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010002687.1:38875-43634[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.011 0.9 10.7 3.5 1 23 174 196 174 197 0.94 2 11 2.7e-06 0.00022 22.1 2.9 1 23 200 222 200 222 0.99 3 11 0.00031 0.025 15.6 0.2 2 23 230 253 229 253 0.94 4 11 0.00014 0.012 16.7 0.3 1 23 259 283 259 283 0.96 5 11 0.0028 0.23 12.6 0.3 2 23 288 309 288 309 0.97 6 11 8.2e-06 0.00067 20.6 0.1 1 23 315 337 315 337 0.98 7 11 5.4e-05 0.0044 18.0 2.0 1 23 343 365 343 365 0.98 8 11 1.1e-05 0.00094 20.1 1.4 1 23 371 394 371 394 0.98 9 11 0.00027 0.022 15.8 3.5 1 23 437 460 437 460 0.97 10 11 0.0042 0.34 12.1 1.1 1 23 479 498 479 498 0.77 11 11 0.00032 0.026 15.6 0.6 1 23 504 527 504 527 0.97
Sequence Information
- Coding Sequence
- ATGTTAAAACTTTTACCACCTGTTAATCTAACTCAACAACCAAAAGCAAAATGTGGCGAGATATTTTGTCATAGCCGCACAGATTTTACAATATACTGTTGCTTTTGCAATATAAAAATATTTGCTTTCCAAGATTTTCTCCTTCACATACAAAATGTTCACTTCGAAAATAATATATTAAAAACCGAAACTGTTACAGAGGTGTTTGAAACGGTGACAAAAATAAACGTCTGTAATAAAACTACTAAGGCGGAAGATTCTAAGAATGAAAGAGATTTTGAAAGTGATAATTCATATGAAAACGATGATGATTTTGAAGGAACTTCCAGTGATTTTGATGATGAGAGTTCTGATGAATCATTTCTAAAAGTCTTGTCAGCAATGCCGGTAAGAGCACTACGAAAAAGAAGAAAAAGAACCAAGGTTAAAGCTAGTAGCAGGAAAGTTGAAACTGAAGAGGATAATGATACAGTTTCAAACTCTTCAGATAAGCCGGAGAAAATAAATAACATTCAAGAATTTTCTTGTCCAGAATGTAACGAACTATTTAGGCGCATAAAACATTTGGATCAGCATGTTTTTCAACATCATAATGGTTATAAATGCACAATTTGCAACAAAAGCTATCGCCAGCAAGCCCTATATAAAACACACTTAAAATCGCATAGCATAGAAAAGCAAAGCTTACCTTGCCCCAAGACAACTTGCAATCGAACTTTTGCCAATCAGGAAAAACTTGATCGCCATCTTGAAGTGCATACAATGGAGCCTAAGTTTGTATGTGATTTCGAAAATTGTGGAAAAGCTTTTCCAACTCAGCTGCGTCTAAAGACTCATATGAATGCTCATAAGAAGAAGAATGTATGTGATATTTGTGGTTATAGTTGTAAAGCATACGCTACCTTAGTAATACATAAACGAGTACACACGGGAGAGAGGCCCTTTTCCTGTGAAATATGTGATAAACGTTTCATTTCGAAGGCTGCCATCAATGAACATATGGCTACCCATTCGAGCGAACGCCCATTTGTGTGCGAAATATGTCAGGCGGCATTTACCAATTTTAAAGCTCTACATCGCCATAGAAAGACACACACCACCGAAAGAAACTATAAATGCAAGTTGTGTGAAAAAGCCTTTAAGACTTACAATGGTTTGGATAATCATATGAGAAATATGCATCGTGAACCTAAACCTACCGATGAAGACGAAGAGTTGCAAAAACAAGAAGATATAAACCCACCTAAAAATGAGGAAATGTATCAACCAAAAAAGAAAAGACGTAAAGGTAATTTGATGCCAAAAAAATTCAAATGCAGCGTATGCTATAAAGGATTTAAGCGCCTTAATGGTCTGGATAATCACATGAGACATTTTCATGGGGAAACTGACTCAAAAACCATAGAGAAATATGAAAATTCTAATAAAAAGAAATATCAGTGCAATATATGTAATAAAAAATTTACTTCTTTAGCGCGTCACAGTTTAACACATAATGATGAAAAGAAATTTGAATGTAAACTGTGTGAAACAACTTTTAAGACTTATAATGGCTTAGTGGGTCATATGCTACGTATGCATGAAGATGCTAGTAGTACCACGACTCATAATAAAGGCTTAAGTAACAATGCTGGTTTGGAAGAAATTGGCTTAAATCTTAGTTAA
- Protein Sequence
- MLKLLPPVNLTQQPKAKCGEIFCHSRTDFTIYCCFCNIKIFAFQDFLLHIQNVHFENNILKTETVTEVFETVTKINVCNKTTKAEDSKNERDFESDNSYENDDDFEGTSSDFDDESSDESFLKVLSAMPVRALRKRRKRTKVKASSRKVETEEDNDTVSNSSDKPEKINNIQEFSCPECNELFRRIKHLDQHVFQHHNGYKCTICNKSYRQQALYKTHLKSHSIEKQSLPCPKTTCNRTFANQEKLDRHLEVHTMEPKFVCDFENCGKAFPTQLRLKTHMNAHKKKNVCDICGYSCKAYATLVIHKRVHTGERPFSCEICDKRFISKAAINEHMATHSSERPFVCEICQAAFTNFKALHRHRKTHTTERNYKCKLCEKAFKTYNGLDNHMRNMHREPKPTDEDEELQKQEDINPPKNEEMYQPKKKRRKGNLMPKKFKCSVCYKGFKRLNGLDNHMRHFHGETDSKTIEKYENSNKKKYQCNICNKKFTSLARHSLTHNDEKKFECKLCETTFKTYNGLVGHMLRMHEDASSTTTHNKGLSNNAGLEEIGLNLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01162429;
- 90% Identity
- -
- 80% Identity
- -