Basic Information

Insect: Phyto melanocephala
Gene Symbol: -
Assembly: GCA_941918875.1
Location: CALNXE010000291.1:525558-527789[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00049 0.04 15.0 1.2 2 23 113 135 112 135 0.94

2 14 0.8 65 4.9 4.7 2 23 142 164 141 164 0.96

3 14 0.00038 0.031 15.3 3.7 2 23 172 193 171 193 0.97

4 14 0.069 5.7 8.2 0.4 3 23 227 248 226 248 0.92

5 14 0.081 6.6 8.0 3.7 1 23 254 277 254 277 0.98

6 14 6.5e-06 0.00053 20.9 1.8 2 23 285 306 284 306 0.97

7 14 3e-06 0.00025 21.9 1.6 1 23 312 334 312 334 0.98

8 14 4.6e-06 0.00038 21.4 1.6 1 23 441 463 441 463 0.99

9 14 0.046 3.8 8.8 3.0 2 23 541 563 540 563 0.96

10 14 0.19 16 6.8 2.6 1 22 569 590 569 593 0.90

11 14 2.8e-05 0.0023 18.9 3.3 1 23 598 620 598 620 0.97

12 14 0.0002 0.016 16.2 1.2 1 23 626 648 626 648 0.93

13 14 0.00025 0.02 15.9 0.7 2 23 655 676 654 676 0.97

14 14 0.0017 0.14 13.3 3.3 1 23 682 704 682 704 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00049	0.04	15.0	1.2	2	23	113	135	112	135	0.94
2	14	0.8	65	4.9	4.7	2	23	142	164	141	164	0.96
3	14	0.00038	0.031	15.3	3.7	2	23	172	193	171	193	0.97
4	14	0.069	5.7	8.2	0.4	3	23	227	248	226	248	0.92
5	14	0.081	6.6	8.0	3.7	1	23	254	277	254	277	0.98
6	14	6.5e-06	0.00053	20.9	1.8	2	23	285	306	284	306	0.97
7	14	3e-06	0.00025	21.9	1.6	1	23	312	334	312	334	0.98
8	14	4.6e-06	0.00038	21.4	1.6	1	23	441	463	441	463	0.99
9	14	0.046	3.8	8.8	3.0	2	23	541	563	540	563	0.96
10	14	0.19	16	6.8	2.6	1	22	569	590	569	593	0.90
11	14	2.8e-05	0.0023	18.9	3.3	1	23	598	620	598	620	0.97
12	14	0.0002	0.016	16.2	1.2	1	23	626	648	626	648	0.93
13	14	0.00025	0.02	15.9	0.7	2	23	655	676	654	676	0.97
14	14	0.0017	0.14	13.3	3.3	1	23	682	704	682	704	0.95

Sequence Information

Coding Sequence: ATGGCTCACATAATTAATCAAACACCTAAAAGTAAAACTGAAAAATATAAAGTTAGTGCAAATGTATGTAATAAAACGATATCTTCAATGGGCTTTGAAGGCATTCCTGCAGCCTCTAATTATGTTAAAGTGGAATTAATAGACTACTCAGACCACCCACAACAAGCCGCAGAAACATTCGCAAAAGCAGGCGCAGTGTTAGGTTGTGTTGAGAGTTCAACAAGGGAAGATGAAAGTTACAGGGATACAGGCAAAGTTCGGCCGTCAAAAAATAACTGGGAGGAAATAGTTCATAATAGGAGAATTTATAAAAGAAAAGTTTATCCTATTGAAAACAAATGTGGTATTTGTTATAAGAGATTTTCCTTTCAAAGAGATTTGATTAAGCATGCCCAACAAACTCATCCCAATGGGAAAGCCTTGAAGTGTCAATATTGTACGACTTTGTTTTCCAAAATCAAATCTATTACTACTCATTTAAAAAGATGTCATCCCAACTTGACCAAAACTCTGCCTTGTGAGTTTTGCCACAAGTCGTTTTTTATTCGCTTTCAGTTGGAGCGTCATAGAAGAACTCATATAGAGCAAATGATGGCTTTGAAAAGAGAAAGTAGAGGAAATATGGATGCGGACGTTTTTGAAAATCGGAAAGGAAAAATTTACCCGATAGAAAATCATTGTGCCGTTTGCGCGGAGATATTTTCCTTTCAAAAGGATCTTGTTAAGCACACCGAACAAGCTCATCCAGATGCTAAAGTATTTAAATGTCTGTATTGTTCTACCCTATTTTCAAAACTTAAATCGGTGACTACCCATTACAAAAGAAGTCATTCTAAAGCGTCAAAGACTATGACGTGTGACTATTGTGACATGTCATTCTTTACGAAATTCCTGTTGGAGCGTCACCAAAGATCTCATACAGAATGCAAACCATTTGTATGCAGTCTGTGTGACAGGGAATACAAATATAAAAGAAATTTGATGGTTCATATGAAAACACATACGGAAGAAGAAAACTCGCATAATAAAGAGTTTGTAGAAGATGAGTATTGTAGTAGTAAAGAGGATTATGGGGAAAAGGATGATCAATATTTATTACCAGATAACGAATATTATAAAATTGACGAACAAAAATTACTAACTGACGATGAAGAGTATGGAGGGGTAAGGGATGATCAACATTTTTTAGCAAATGAGTATTGTGAAAATTCTCCGGAAAATCTATTAACGGAGGATGAATATTGCAAGGATGATGAGGAGTATTTTACAAATCAATATGAAAAAGGGGTGGATAATATTTACAATAAATCACAGTTTCCCTTTAAATGTAACGAATGTGGAAAATCCTACGGGTTAAAAAATGATTTAAAGAACCATCAAAAATCTCACCAGCAAAATAATGAACTAACGGAAATTATAGCTGTAGCTGAAGGATCGGAAATTGAACAGATAGAAAATAATATTTATAGAAACACGTATTTCATTATAGACGAATTTAATACAGATTCAGAATCCAATGACGTTTTAGAAAACGATGAAATACCAACATATTACTCTAATGAGTACAATTATAATCACGTTGAACAACCTGACACGCATATTTCGGCAGACAAACAAAGCATGTGTGAAGTATGTTCCAAATCAATTACAAGTCAGCAATCGATGGCCAAACATTTTCGACGTTGTCATCCTGAAATTGATTTTTTCAAATGTCATTTTTGTGATGATTATTTCTTTAGTCTGGATTCGCTATCACAGCACATTGATATTCGGAAACATCCACAAAAGCCACATGTTTGCGAAATGTGTCTAAAGTCTTTTAATCGCAAAAGTGATTGGAAACGGCACAGAAAAATACACACTGACGAGCGTCCGTATGTGTGCAATATATGTCAAAAAAGCTTTAAAATATTTAATCAGCTAAGACGTCACGAAGTGAATCACACTTTACCCAATAATTTAACATGTGAATATTGTTTGATATCATTTAATAACAGAGAAAGTTTATATCTTCACCTAAAGACTCACACGGGTGAAAATAAATACTTGTGTACACTTTGTAAACAAGTCTTTAAAATGAAAAGTTGCTTGGTAAATCATCGAAGAGCTCATTAA
Protein Sequence: MAHIINQTPKSKTEKYKVSANVCNKTISSMGFEGIPAASNYVKVELIDYSDHPQQAAETFAKAGAVLGCVESSTREDESYRDTGKVRPSKNNWEEIVHNRRIYKRKVYPIENKCGICYKRFSFQRDLIKHAQQTHPNGKALKCQYCTTLFSKIKSITTHLKRCHPNLTKTLPCEFCHKSFFIRFQLERHRRTHIEQMMALKRESRGNMDADVFENRKGKIYPIENHCAVCAEIFSFQKDLVKHTEQAHPDAKVFKCLYCSTLFSKLKSVTTHYKRSHSKASKTMTCDYCDMSFFTKFLLERHQRSHTECKPFVCSLCDREYKYKRNLMVHMKTHTEEENSHNKEFVEDEYCSSKEDYGEKDDQYLLPDNEYYKIDEQKLLTDDEEYGGVRDDQHFLANEYCENSPENLLTEDEYCKDDEEYFTNQYEKGVDNIYNKSQFPFKCNECGKSYGLKNDLKNHQKSHQQNNELTEIIAVAEGSEIEQIENNIYRNTYFIIDEFNTDSESNDVLENDEIPTYYSNEYNYNHVEQPDTHISADKQSMCEVCSKSITSQQSMAKHFRRCHPEIDFFKCHFCDDYFFSLDSLSQHIDIRKHPQKPHVCEMCLKSFNRKSDWKRHRKIHTDERPYVCNICQKSFKIFNQLRRHEVNHTLPNNLTCEYCLISFNNRESLYLHLKTHTGENKYLCTLCKQVFKMKSCLVNHRRAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -