Pmel019115.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010002607.1:47363-71412[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.017 1.3 10.2 0.3 2 21 282 301 281 303 0.94 2 13 2.8e-07 2.3e-05 25.2 4.7 1 23 416 438 416 438 0.99 3 13 0.00025 0.02 15.9 0.2 3 23 446 466 444 466 0.92 4 13 0.0063 0.52 11.5 1.3 2 23 473 494 472 494 0.96 5 13 0.00025 0.02 15.9 1.2 1 23 500 522 500 522 0.95 6 13 0.00029 0.024 15.7 0.4 1 23 815 837 815 837 0.98 7 13 0.00012 0.01 16.9 1.5 2 23 848 869 847 869 0.97 8 13 0.00014 0.011 16.7 0.3 1 23 875 897 875 897 0.93 9 13 0.0013 0.1 13.7 1.4 1 23 903 925 903 925 0.94 10 13 4.9e-05 0.004 18.1 1.7 1 23 932 954 932 954 0.97 11 13 0.014 1.2 10.4 3.1 1 23 960 982 960 982 0.97 12 13 0.0019 0.15 13.1 3.3 1 23 988 1010 988 1010 0.98 13 13 0.011 0.91 10.7 0.2 1 23 1016 1038 1016 1038 0.97
Sequence Information
- Coding Sequence
- ATGAGTCCTAATTCAAAAAATTCTTTACGGAATATGTGCCGGACGTGTATGAAAAAGTTTTCGAAGTCTGCCAAGGAAAAGGCCATTAAAAACAAACAGAGCATTTATGAAATACCAACGGGAAGCAACGAAAGTGCAAGCCTAATGGATTTACTACAATTAGTGCAACCACACATTAAAGTGGAACTAAATGATAATCTTCCTTCGTTGATGTGCTTAGATTGTATACAAAAATTATTAATGACATATGAATTTATATGTATGTACAAAAGTGTGGATAAACAGTTCCGCAATATTTTGAAGGAGGCTGATTTCAATAACAGTAGAGATAATTTGGATGATGATAATGTTTCAAATAAATCCTTAGAAGTTATTGTAATAAATGAATTTTCCGATGAAGCCTTTGATAAAGAAGATGATATATATGGTATAACCAACAATGAATTTCACGTTGAAGAAATAGATATTGAGAAACTAGAGGATGAAGAGGTGAAAGTAACTGATTGGCATCAATTTGACGATGAACCGTCGGAAGATAAAGAATTATATATGACAAATCCGTATAGTGATGTTGAATCTGAAGAAAAAGTTCCATATTTCTTAAACCCTTATAGTGATGCTAGTGATAATGAGTGGACCGATAAAGAAAGTGGTAAAAAGAAAACACATAAAAAAAAACATGTCAAAAAACGAAAGTCAGAGAGTGAAATAAATACTGAGAGCATAACTTGTTCCACACCGAAAAAGTGTTTTGAAGAAAAGTACCAAAATAATGGAAATGAAGGTTTTTTAAGATCTGAAACTGAGAAAGGACATCATGTTATTAATGATGTCGATAGTGTACCATGTTTGGAGTGTGAAATAGTTTTTGATAATGAACAACTATTGCAAGAGCATATGCGATGTCATCAACTTGAAAAAGCATATTTAAAGGAATACATGAAGAAATCGAATGATTTAGAAAAAACGGAAGAAGAGAAAAGCGGATGTCATGAACTTGAAAAAGCATATTTAAAGGAATACATGAAGAAATCGAATGATTTAGAAAAAACGGAAGAAGAGAAAAGCGGATGTCATGAACTTGAAAAAGCACATGTAAAGGAATACATTAAGAAATCAAATCATTTAGAAAAAACGGAAGAAGAGAAAAGTGGATGTCATCAACTTGAAAAAGCGTATATAAAGGAATACATGAAGAAATCGAATGATTTAGTAACACTGGAAGTAAAAAAAAGTGGAAAAGGATACAAATGCGAGCATTGTGGCAAAGAATTCACGAAATCTCAAAATTTGAATAATCATAGGCGCACACATACAGGCGAGGAACCGTTCTTGTGCATAGAATGTGGAAAAAGTTTTAAAGTTTTAGGCAGTTTAAACATACACATGTTACGTCACAAAGGGGATAAAAATATACAATGCCCACACTGTCCGAAAAAGTTTGTCTGCTCAAGTGGCTTATATGGTCATTTGATGGTACATACAAAGGAAAAAACATTTGTATGTGATATTTGTGGAAGAGCATTTCATATGGCATACCAGTTAAGGAAGCACAATCTTTATCACAATAATATTAGAAACTATCCATATGTCTCCGACTTCCTATACAATGGTATAGGTCAACTTTCGGTGCCTGAACCAACGTTTTGTAACTGGAGAAAACCCATAAAACTTAATTTTATTTATTGCGACTTGCGGTGCCTGAACCAACGTGGAATACGCTGGCTTTTTGGTTATGTACCTCTGCCAATCAGTTTTAGAATACAAAAAAAACTTTCGTGCACATCTCATAGTACAAACCTAAAGCCAAGTGAAGAAATGCCTGAACCATTGGAAAATGTATGCCGTACTTGTATGCTAAGTAAAAAAGAGTCGAAAGGAATGGAACAAGAAATAAAAATGGTAGAAATTTTTACTGTACCAGAAGAAAGTCCAAATAAAAAACTTAGCTTAAAAGAAATGCTTAAAATTGCAATACCACAATTAAAAATCGAAGAAAACAATCAGTTGCCAAAAAATGTATGCCAAAATTGTGAGGAAAAGATCAAGGATATTTTTGATTTTCAACAAAAATGTGTATACATTGAAAATAAATTACTTGAAATGTTAAATGAGAACAACTTAATACATTTGTTAGGGAGCGAAGAAAGTCTAGAAAAGCAAATTATAAAAACTGAAGTAAATGATACTTTTAGTTCAAACAATTCTATGGATTGTGATAATCATGAAATAATGGAAGAAAATGAACTGAATGATACGATTCTGAATGATGGCAATGTAAGCGATTGGGACGAACTGCATCAACCAAGTAAATCAAAAACCCATAGAAAATCCCAAAAAAGGAGAAAGACTGATGATAAAACAAAGAAAAGTGCAGAAAAAATAAAACAAACAACTTCGAAACGCGTATCGAGATCGAAACGATCCGATATAAAGGATGTTTATCCATGTGACAAATGTCAGAGAAAGTTGATATCTAAAGCATCATTAATAAAGCACCAAGAAATGCACTTAAAAAAGGATAAAGAAGAGCAAGAACTAAAGTGTAGCATTTGTAATCAAGAATTTTCTGATAGAGTCATGTTTAAAAATCATCAAACAACTCATAATGCAGATAAACCATACTTGTGTTCTGAATGTGGAAAAGGTTTTGCATCAGCTGGAAGTTTGAAACAACACTCTTTTCGTCATTTAGATACAAAATTGTATCCTTGCTCATATTGCCCCAAATCGTTTCCAACTAGAAATGATTTGCTTTGTCATTATGAAATACATAAAGCTAAACCTCGAATCCATGTTTGTGACGTTTGTGGGCGTGGTTTTTACAAACCATTCTTGTTGAAACAACACCAGAGGTATCATAATGATGAAAGACCATTTGCCTGTACATTCTGTGAGAAACGATTCGTAACTAGTGAAAaacatcagagacatgtgcgaattcacacaggagaaaagccatatcgctgtaaatattgtgaacgagcttttgcccaaagtaatgattgcattaaacatttgcgacaacatttgggggagaatgtttatcagtgtgaattatgtccgtcaagatttcctttggccagagacttacgagcacatttctccagtcataaagatgatgatgacgaaaccagagcccgaaatttagaagcacgactagaagaggaacgaagtttacaaaatAAATTAGGTTTATAA
- Protein Sequence
- MSPNSKNSLRNMCRTCMKKFSKSAKEKAIKNKQSIYEIPTGSNESASLMDLLQLVQPHIKVELNDNLPSLMCLDCIQKLLMTYEFICMYKSVDKQFRNILKEADFNNSRDNLDDDNVSNKSLEVIVINEFSDEAFDKEDDIYGITNNEFHVEEIDIEKLEDEEVKVTDWHQFDDEPSEDKELYMTNPYSDVESEEKVPYFLNPYSDASDNEWTDKESGKKKTHKKKHVKKRKSESEINTESITCSTPKKCFEEKYQNNGNEGFLRSETEKGHHVINDVDSVPCLECEIVFDNEQLLQEHMRCHQLEKAYLKEYMKKSNDLEKTEEEKSGCHELEKAYLKEYMKKSNDLEKTEEEKSGCHELEKAHVKEYIKKSNHLEKTEEEKSGCHQLEKAYIKEYMKKSNDLVTLEVKKSGKGYKCEHCGKEFTKSQNLNNHRRTHTGEEPFLCIECGKSFKVLGSLNIHMLRHKGDKNIQCPHCPKKFVCSSGLYGHLMVHTKEKTFVCDICGRAFHMAYQLRKHNLYHNNIRNYPYVSDFLYNGIGQLSVPEPTFCNWRKPIKLNFIYCDLRCLNQRGIRWLFGYVPLPISFRIQKKLSCTSHSTNLKPSEEMPEPLENVCRTCMLSKKESKGMEQEIKMVEIFTVPEESPNKKLSLKEMLKIAIPQLKIEENNQLPKNVCQNCEEKIKDIFDFQQKCVYIENKLLEMLNENNLIHLLGSEESLEKQIIKTEVNDTFSSNNSMDCDNHEIMEENELNDTILNDGNVSDWDELHQPSKSKTHRKSQKRRKTDDKTKKSAEKIKQTTSKRVSRSKRSDIKDVYPCDKCQRKLISKASLIKHQEMHLKKDKEEQELKCSICNQEFSDRVMFKNHQTTHNADKPYLCSECGKGFASAGSLKQHSFRHLDTKLYPCSYCPKSFPTRNDLLCHYEIHKAKPRIHVCDVCGRGFYKPFLLKQHQRYHNDERPFACTFCEKRFVTSEKHQRHVRIHTGEKPYRCKYCERAFAQSNDCIKHLRQHLGENVYQCELCPSRFPLARDLRAHFSSHKDDDDETRARNLEARLEEERSLQNKLGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -