Pmel003609.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000328.1:10141-15117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1 84 4.5 0.8 1 23 310 333 310 333 0.93 2 13 0.02 1.7 9.9 1.1 2 23 408 430 407 430 0.95 3 13 5.4e-06 0.00044 21.2 0.7 2 23 821 842 820 842 0.97 4 13 0.00016 0.013 16.5 2.0 1 23 848 870 848 870 0.96 5 13 1.3e-05 0.0011 19.9 1.9 1 23 878 900 878 900 0.99 6 13 0.00097 0.079 14.1 0.2 1 23 906 929 906 929 0.97 7 13 0.002 0.16 13.1 2.0 1 23 1094 1116 1094 1116 0.98 8 13 0.041 3.3 8.9 0.8 3 23 1124 1144 1122 1144 0.97 9 13 0.0034 0.28 12.3 6.6 1 23 1150 1172 1150 1172 0.98 10 13 3.2e-07 2.6e-05 25.0 0.2 1 23 1178 1200 1178 1200 0.99 11 13 0.00031 0.025 15.6 4.8 1 23 1206 1228 1206 1228 0.98 12 13 6.9e-05 0.0056 17.7 3.7 1 23 1236 1258 1236 1258 0.99 13 13 0.0001 0.0083 17.1 0.5 1 23 1264 1287 1264 1287 0.97
Sequence Information
- Coding Sequence
- ATGATCAACACTTTGCTGGAGCATGTGCCCATCAAAATGGAAGTCAAAGATTTGGAAGAAGAAAAAAGCAAAAATCGTTTAAAAAAGGGCACAGCTATAGTAATGCCGAAAAATATTAACATGGATGAAGACGATGATGACATGGTTGCAGATGATGAGGACGTAGATGACGATGATTATGATGACGAGGATGATGATGATGATGAAGAGGATGACGAAGAAGAGTCTGATATAGAAACTGATGCCTTGGAAATTGAAAAGGAGGCCACTTTATTAATCAGCAGTGATGAAGAGGCAGAATTGGAGGCCCAAAGAATACGATTTCCGGATAAAACAATTGCCAAAAAAATTCGTCGTGATTCGCTTAAATCTTCACGCAGCTCTTCCAGAAATAGCCAAATTAGTAATCATTCCCAAACACAAATAAATAAGCTACCAATTTCAAAAGAAGTAGCTTCAAAAGACACCAGAGAGGAAATTGACAAGAAACAAAGAATTTCACCTCGCCTTAAGTCCACGGAACAAGAAAAAACTTTTGTGAGTTTAGCAAAAGAGAGCAACAATAATACAAACACACTCACACAAACTAAAAAGAAAACTGAAAACAAGGAAAACAAACAGCTAGAGGCAGGCAAATTTGTTGAAAACAACAAATCAGCTGCAGATACTTATAATAGAAATTCTGGCAAATTCGTTGAAAACAACAAATCAGCTGCAGATACTCATAATAGAAATTCTGAAAATAATCGTAATAAAGAAAATATACAAAAGTCACCGGTCAGTGTTCCCGGTGGCTGTGATGGTGCGAAAAGTCGTCGTGGCAGTAATAATTCTACCTGCAGTGTGGCTTCCACGGTAGCCTCTGATTCAGCTGAAACTGAATCGTGTGGCAATATATACGTTTTTAATTTACAGCAGAAACTAATTTTCAACTGTGAATTTTGCGATTTAAAATACGGTGAGTTGGAAAATTTTGGACGTCACCTTCACGAAGCACATAAACTGTTTAACCTCGATGAGGATCCCGAAAAAGAAAATGCGCCACGAAACTTGCGCAATCGTAATAATGCACAAAAAAATACCGGCAATATTAAAAAAGAACCTCTACAATGTTTGGTATCGTTGTCTGAACCACCTGTTGCTTTGCCGCTGTCAGTACTGGCGGAACCTTTAGATTCGTGTGGCAATGTCTTTGTACTTAATCATCGTAAATTGTTTTTGGTGTGTGGCTATTGTGAATGTAAATATGCAAACTTAGAATTGTTTGAAAAACATTTAAGGCAACAACATCGAATATTCGAAGGATGTCGCAATGAGGTAAATGTTGTGCCTAAGGTGGAGGTTAAAGAAGAGTTATTTGTCATTACTGAAATGATGGATCAACAAGCTATATTAGCTCCCATGGTAGCCATACCGGCAGAAATTCCTTTAGATATAAGCATAACACCGGAAAATGTGTCTCAAACTCAAGAAGCTTTGGAGGAAATAAAGGCAACAGAAGAATTAAACATAACAGAAGGGTTAAACGCTGACTCCACTGCAAATACAGAAAACTGTTTAAGTGACAAAAATACCTTACAAGTTGCTGTAGCTGAGGAATCACAGAATACTCCGGCTAAAGATATTACCACTGACGTACATTTACTTGAGCCTCTGGCTATCGAAAAGCCAGCTTCTCCCCTGAAAACCAGAACGAAAAGACGCTCCTCTCCCGATAAACTTACAACAACGGTTAATAAAAGACCCAAACGAAGTACTAGAAATAATAAAGCTGAAGAGGAGCTCATTCCTTTGGTAGCGGAGGAGAATACTCCTGATATATCAGCAGAATCTGCTGCACCTCTGACTCCAGCTGAAGAAACACATAAAATTATTGAAACTGTAGCTACTGCAGAAGCTAAAGACAAAAGAAAGTCTTCCAGAAACACAGAATCCCAGAAAGCCACTAGCGTTGAATTAAAGAACACAGAAGAAACAAAGAAAAACACAAAAACAACAGAATCTGAAAAATTAACTACTGTAGAACCTGATGAAGCAACAAACCCCCCAAAATGTGTAGAAACAGGAATAACAGCAGTTATGGAAACAGAAGAAAAAAGAAAATTAATTAAAGTTATTGAAACGACAGAGACTAAAAGTTCTGTTGACATCATACAGACTAAAGAAAAAAGAAAGTCAGCAAAATCGAAAGAATCTACAAAATCAGCAGATGAAAAGGTAATGGAAATAAGAGAAACAAAAGAAACTAGAAAATCAAGGAAATCTATAGAAGCCAAAGAATTATCTAATTCGGTAAAAACTTCTGATACTAAACAGAGCAGAAAGTCTGCAAAAGCATTAGATTTACCTGTACAAGACGAGGGAAAAACTGTATCACAGAAAAAAACCAGAAAATCTGAAAAATTGCCTGACGAAAAAGAAACATCTGAACCTGAAAATGAAGCAGAAAAAACACAAATACAGTGTACCCGATGTGACAAGACATTTGCCCGCAAGGAAAGTTTAAGAATACATGAACGCGTTCACACTGGTGAAAAGCCTTTCGTGTGCGATGTTTGTAATAAAAGTTTTCGGGCTAAGCAAAATCTCACTCTGCACAAAAAGTTTCATTTGGGCGAGTCGTCACGAACATTTAAATGTGAACAATGTGACAAGAAATTCTGGCGCAATACCGACCTCAAGGTGCACATGAGATCACACACAGGCGAAAAGAAATTCCAGTGTGGCATATGTCTACAAAGTTACTCTTCTAAAGTCAATGTACAGAATCATATAGAACGGGATCATTTACCAGCAGATGGTGTGAAGGGTGCACCGCCCAGAGGTAAAAAGAAAACGGGGCCAAATTATAAGGTGTTAAAAGAAGAATTGAAGTATCAAATGAAAATCATTGAAGAATTGCAAAATGCGAAAAAGGAAAAAGAAAGTAACGCAACGAGCATGTTAACGCCACAGTTGCCACCAATACCTCAGGAAACAGTGCATTACGAGGAGCCAGAGCAGAATCAACATATGCAAGATCTCAATGCTGATCCGGTCAGTGATATTTTAGAACAAATAGAAAATGAGATGAGAGAAAGTGAAATGCTACAACATGAACAAGGAAATGCACAAGTCAGTGCTGTGACTTTTACAATTAACGCGGTGTCCGAAAGTAATGAAGTATTAGATAATGCAAATATCAGTACAACAACAATAGCTCTTAAGCCTTCAAGTAATGATGATTTGTTAAATTCACCGCAGGATGTCAAGCCAACTTTTCTACAAGTTATTAAACGTTTTGTTTGCGATCAATGTCCTCGCACCTTTAAGAAACACATACGCCTGGTCGAGCATCAACGCCTTCATACTGGCGAAAAGCCCTTCGGTTGTGATGTGTGCGGCAAACAGTTTCGCATACGCATGCGTCTCAACGAACACAAACTACGACATTCCAAAGAAAAGAAATTCAAATGTGATCTCTGCGATCTGGCCTGTTGCACGAAGCAGGACTTGAACCTGCATATGCGTCACCATACCAACGACCGGCGCTTCCAGTGCTCTATGTGTCCTAAGGCATTTGTACGTAGCTCAGATCTTAAAATACATGTGCGTGTACATACAGGTGAAAAACCTTACGTATGCGACATTTGCCACAAATGTTTCAGGGCCAATCAAAATTTAAGCGTTCACAAAAAATCACACATGGGCGATGCCTCCAAAACCTATCAGTGTGAACACTGCGATAAAAAGTTTATGCGCAACATAGATCGTAAAGTACACATGAGGTCGCATACTGGAGAAAAGCCGTACAAGTGTGAGATATGTCAACGGGGCTACTCGTCGAAATTCAATGTACGGGCACACATCGAAAGAGATCATATATCGGCTAATGGTGTGGGTGCACCGCCTAAAGGTAAAAAGAAGCCAGGACCCAAACCGAAGGGCCTAAAAGCTGAGTTAGAGAAACAAAAGAAACTGATAGAGGAATTACAAATTCAACTGTTGCAACAGATAAAAACCGATGAAAAGATTATTAACGCCGATGAGGAGATACTACCACATGACAATGTACAAGATTGTACCGTTACCGGCTCGACGCCTCTTAGCCCCACTAATAGCAACAGCAATCCAGATCCTATACAAAGTGCTTATGATTTGCTGAAGAAACTTAAAACAACTACTACCTCTAAACCTTTAACTATAATACCATCTCCGCCACCGCTAGAAGAACCGCCCTCCAATCCTTTTACGAAAGCCAAAAAGGCCGCTTCCACCTCTTCCGCCTCCTCAACTTTACTACCTCTCACTATCACGCAAAAAATTGAACAACATTCTCCAGCAGCTTCCTCTTCATCATCAACGCGATCAACAGCTTCCTGTCTTAGTACACCTTCACCTCCCAAGACCTCCACCACAAAAGTAGTGGCACAAAAAACCGCTTTGGGTATACAACAAGTGTCAGTAACTGTTTCCATGCAAGTAGAAAATGTAACAGCACCCAATCGCACCACACCCGAAAAAGAGAATGCTGGCGTTTTGACAGCAAATACAAACGGCGAAACGTCGACAACGACAGCAGCGACGACTAGTGTTAAAAAGGAGAGAAAAATCACTAGTTATTTTACAGTGGTGGGTCAAAAGGCAGACGCTTAA
- Protein Sequence
- MINTLLEHVPIKMEVKDLEEEKSKNRLKKGTAIVMPKNINMDEDDDDMVADDEDVDDDDYDDEDDDDDEEDDEEESDIETDALEIEKEATLLISSDEEAELEAQRIRFPDKTIAKKIRRDSLKSSRSSSRNSQISNHSQTQINKLPISKEVASKDTREEIDKKQRISPRLKSTEQEKTFVSLAKESNNNTNTLTQTKKKTENKENKQLEAGKFVENNKSAADTYNRNSGKFVENNKSAADTHNRNSENNRNKENIQKSPVSVPGGCDGAKSRRGSNNSTCSVASTVASDSAETESCGNIYVFNLQQKLIFNCEFCDLKYGELENFGRHLHEAHKLFNLDEDPEKENAPRNLRNRNNAQKNTGNIKKEPLQCLVSLSEPPVALPLSVLAEPLDSCGNVFVLNHRKLFLVCGYCECKYANLELFEKHLRQQHRIFEGCRNEVNVVPKVEVKEELFVITEMMDQQAILAPMVAIPAEIPLDISITPENVSQTQEALEEIKATEELNITEGLNADSTANTENCLSDKNTLQVAVAEESQNTPAKDITTDVHLLEPLAIEKPASPLKTRTKRRSSPDKLTTTVNKRPKRSTRNNKAEEELIPLVAEENTPDISAESAAPLTPAEETHKIIETVATAEAKDKRKSSRNTESQKATSVELKNTEETKKNTKTTESEKLTTVEPDEATNPPKCVETGITAVMETEEKRKLIKVIETTETKSSVDIIQTKEKRKSAKSKESTKSADEKVMEIRETKETRKSRKSIEAKELSNSVKTSDTKQSRKSAKALDLPVQDEGKTVSQKKTRKSEKLPDEKETSEPENEAEKTQIQCTRCDKTFARKESLRIHERVHTGEKPFVCDVCNKSFRAKQNLTLHKKFHLGESSRTFKCEQCDKKFWRNTDLKVHMRSHTGEKKFQCGICLQSYSSKVNVQNHIERDHLPADGVKGAPPRGKKKTGPNYKVLKEELKYQMKIIEELQNAKKEKESNATSMLTPQLPPIPQETVHYEEPEQNQHMQDLNADPVSDILEQIENEMRESEMLQHEQGNAQVSAVTFTINAVSESNEVLDNANISTTTIALKPSSNDDLLNSPQDVKPTFLQVIKRFVCDQCPRTFKKHIRLVEHQRLHTGEKPFGCDVCGKQFRIRMRLNEHKLRHSKEKKFKCDLCDLACCTKQDLNLHMRHHTNDRRFQCSMCPKAFVRSSDLKIHVRVHTGEKPYVCDICHKCFRANQNLSVHKKSHMGDASKTYQCEHCDKKFMRNIDRKVHMRSHTGEKPYKCEICQRGYSSKFNVRAHIERDHISANGVGAPPKGKKKPGPKPKGLKAELEKQKKLIEELQIQLLQQIKTDEKIINADEEILPHDNVQDCTVTGSTPLSPTNSNSNPDPIQSAYDLLKKLKTTTTSKPLTIIPSPPPLEEPPSNPFTKAKKAASTSSASSTLLPLTITQKIEQHSPAASSSSSTRSTASCLSTPSPPKTSTTKVVAQKTALGIQQVSVTVSMQVENVTAPNRTTPEKENAGVLTANTNGETSTTTAATTSVKKERKITSYFTVVGQKADA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -