Pmel005247.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phyto melanocephala
Gene Symbol
-
Assembly
GCA_941918875.1
Location
CALNXE010000487.1:407857-410710[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0025 0.2 12.8 3.8 1 23 179 201 179 201 0.97
2 14 0.0013 0.11 13.6 4.1 1 19 207 225 207 227 0.95
3 14 1.5e-06 0.00012 22.9 1.7 2 23 317 339 316 339 0.97
4 14 0.00013 0.01 16.8 2.0 1 23 416 438 416 438 0.99
5 14 0.0013 0.11 13.6 2.9 1 23 444 466 444 467 0.95
6 14 0.0046 0.38 11.9 0.3 1 23 488 511 488 511 0.96
7 14 1e-05 0.00082 20.3 2.6 1 23 517 539 517 539 0.98
8 14 2e-06 0.00016 22.5 2.4 1 23 545 567 545 567 0.99
9 14 1.2e-07 9.6e-06 26.4 1.8 1 23 573 595 573 595 0.96
10 14 0.0076 0.62 11.2 4.1 1 23 601 623 601 623 0.97
11 14 0.00091 0.074 14.1 2.2 1 23 629 651 629 651 0.96
12 14 6.1e-07 5e-05 24.1 0.4 1 23 657 679 657 679 0.99
13 14 2.9e-07 2.4e-05 25.1 1.6 1 23 685 707 685 707 0.99
14 14 0.008 0.65 11.2 0.1 1 19 713 731 713 732 0.97

Sequence Information

Coding Sequence
ATGTTAATATTGGAAATATATGGACGGGTGTGTCGAGTATGTATGTGTAAAGCGAATAATTTGCATAACTTAAACGAGACAACCGAGGAGTGTCTCACTATGAATGAAATGTTAACAAAAACTGTTTCCGGCATACATGCCAACATCGAATTTCCAGTGCCTCAAGAAATTTGTGATTTATGTATGGAACATTTGCAAATTTCTTATAGATTCCAACAACTATGTATGACCACCAACGAACAAATGCAGAAGATCTGGGAACAGTCCCAAAAGGCAGAAGTGAAACAGCAATCGATAACGGGAGAGGTGGAAAATGAAGATGAGCCTGATCCCATAAAAGTCGAATTCGATATGGTAGAGGGGGAGGAGCAAAAGCTCGACAATGACGATATCTTAGAGGATTTTGAAAAGGTGGAAAATGGTAATAAATGGGAAAATGAGACTGATGATGATAGAACATATCGCAATGAATTGTCTTGCAAAGACTCAACCTTAAAATCAGCTTCATCTACTAGTCGGCCTTCGGTTGGTCGCTTTGCATGTTTAGAATGTAGGGAAACATTTGGAAAACATACTTTACTAAAACGGCATCGCCGCAAACACAAGTCAACACATCCTTTCGAATGTAGCAAATGTACACAACGTTTTAAAACCAAAAGTCTACTGCATAAGCACTCGAAATGCTGTAGAATAGACAAAAGAAAAATGGCAAATAGAAGTGATAGTGAGGAAGATGATGAAGATTTGCCTTTAAGTGCTTTAAAGAAATCAGAAACAGATTATGAAAGTGATATCTCGAAGGAAAACGACAAAAAGAAACGCAAACCTGTAAAAACTGTTGAAAAAAAGACTCCTTATCATTGCTCTAAGTGCAAAAGTTATTTCAAATATGGCTATCAGCTTACAAAACATTGTTGCAGTGATAGTGCTAATGCAGTGCATTCGAATAAATGCGAAATATGTAATAAAAGTTTCAGCTCAGAAAATATGTTGCAAAAACATATGAATAGCAAACATAAAGACAATGAAAGCGCTAGAAAGGCAGAAAAGAAATCTACAGATGATGGAGGGGATAAATTTAAGCATGATGATCAGATTGAAGAAGTAAATGTCGATCACGATAATGATAATGATGACAATTGGAACGACACGAATCAAGGTGATTCTTCGGATGAAAGTGACTCAGATTATGCAGAAAAAGACAAACCAGCTGGAAAGAGTAAACCAGAGCCGCTGGCAAATCAATATAAATGTGATGAATGCGATGCTTCTTTCAGATTTGAGAAACAGCGTGTTCGTCATATGAAAAAACACACTGAAGCACATCGTTTTGTGTGTGCTATTTGTTGGGATCGTTTCAAGTATCCACATATGTTACAAAAACATATGGAAAAACATCATCCAGAAGATAATCCTAATCCTAAAGTGGCGGATACAAAACCAGAAAATGTAGAAAAGACCCACGTTTGTAGCTATTGTCCATCGGCCTATTCGAATGTGGGCGGTTTGGCTCAACACATGAGTAAGAAACATCCCGAGATTAAGCCATTCAAATGTGACAAATGCGATAAGACTTTTGTGGTCGAGGAGCATTTGAAAATACACACAAATCGTCATATGGGTATTAAAAACTTTAAATGTGATCTTTGTGATAAATCATTTTCATTTAAGTTTGCAATGAAACAGCATATGCGCATACATACCGGTGATTTAAATTACTTGTGTACGCTGTGCGGCAAGAAATTTTATAGACCTAGTAATTTGCGTCAACACATGCAACGTCATGGTGATGATAAACCTTATACATGTCCACACTGTCCTAAACGCTTCAAATGTCCTTCGGATCGTTATATACATTTAATGTCACATCAAGAAGGCAAAAATCATGTGTGCCAGACTTGTGGCGCTCGATTTTCTCGGGTAGATACTTTACATCAGCATCAAATATTACACACAGGCGAAAAACGCTATAAATGTGATCAGTGTCCTATGGCGTTCCCACGTTTAATGaatttaaatcgtcatttacgcactcataccggcgaaaaaccatacaaatgtaaatactgcgaaaaagcttatgcacaaagtaatgatttaaataaacatttgcgcactcacgttggtgaaaacacctatatgtgCACCCAATGTCCGGCTGCGTATAAATATCAGGCTGACTTAAGAAATCATGAATGGGAACATTATCGTTTGCAAAAGGAAGCCGAACAAAAGGCAAAAGAGGAAGAGGCAGCCTTAAAAATGAAAGAAGAGCAACAACAAACTGTAATGGAAGTAAATGCATAA
Protein Sequence
MLILEIYGRVCRVCMCKANNLHNLNETTEECLTMNEMLTKTVSGIHANIEFPVPQEICDLCMEHLQISYRFQQLCMTTNEQMQKIWEQSQKAEVKQQSITGEVENEDEPDPIKVEFDMVEGEEQKLDNDDILEDFEKVENGNKWENETDDDRTYRNELSCKDSTLKSASSTSRPSVGRFACLECRETFGKHTLLKRHRRKHKSTHPFECSKCTQRFKTKSLLHKHSKCCRIDKRKMANRSDSEEDDEDLPLSALKKSETDYESDISKENDKKKRKPVKTVEKKTPYHCSKCKSYFKYGYQLTKHCCSDSANAVHSNKCEICNKSFSSENMLQKHMNSKHKDNESARKAEKKSTDDGGDKFKHDDQIEEVNVDHDNDNDDNWNDTNQGDSSDESDSDYAEKDKPAGKSKPEPLANQYKCDECDASFRFEKQRVRHMKKHTEAHRFVCAICWDRFKYPHMLQKHMEKHHPEDNPNPKVADTKPENVEKTHVCSYCPSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKYCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKEEEAALKMKEEQQQTVMEVNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259363;
90% Identity
-
80% Identity
-