Basic Information

Insect: Phyto melanocephala
Gene Symbol: -
Assembly: GCA_941918875.1
Location: CALNXE010000487.1:388537-391376[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00021 0.017 16.1 0.5 1 23 187 209 187 209 0.97

2 13 9.3e-05 0.0075 17.3 0.3 1 23 215 237 215 237 0.99

3 13 5.9e-05 0.0048 17.9 2.9 1 23 292 314 292 314 0.98

4 13 0.00017 0.014 16.5 3.1 1 23 423 445 423 445 0.94

5 13 0.072 5.9 8.2 0.8 1 23 451 474 451 474 0.95

6 13 0.0016 0.13 13.3 5.9 1 23 480 502 480 502 0.98

7 13 2.8e-07 2.3e-05 25.2 0.4 2 23 509 530 509 530 0.97

8 13 5.6e-07 4.6e-05 24.2 0.2 1 23 536 558 536 558 0.96

9 13 0.035 2.9 9.1 0.4 1 23 564 586 564 586 0.95

10 13 0.00012 0.01 16.9 0.7 1 23 592 614 592 614 0.95

11 13 1.5e-05 0.0012 19.8 3.7 1 23 620 642 620 642 0.99

12 13 8.8e-07 7.2e-05 23.6 1.2 1 23 648 670 648 670 0.99

13 13 6.1e-06 0.00049 21.0 0.7 1 23 676 698 676 698 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00021	0.017	16.1	0.5	1	23	187	209	187	209	0.97
2	13	9.3e-05	0.0075	17.3	0.3	1	23	215	237	215	237	0.99
3	13	5.9e-05	0.0048	17.9	2.9	1	23	292	314	292	314	0.98
4	13	0.00017	0.014	16.5	3.1	1	23	423	445	423	445	0.94
5	13	0.072	5.9	8.2	0.8	1	23	451	474	451	474	0.95
6	13	0.0016	0.13	13.3	5.9	1	23	480	502	480	502	0.98
7	13	2.8e-07	2.3e-05	25.2	0.4	2	23	509	530	509	530	0.97
8	13	5.6e-07	4.6e-05	24.2	0.2	1	23	536	558	536	558	0.96
9	13	0.035	2.9	9.1	0.4	1	23	564	586	564	586	0.95
10	13	0.00012	0.01	16.9	0.7	1	23	592	614	592	614	0.95
11	13	1.5e-05	0.0012	19.8	3.7	1	23	620	642	620	642	0.99
12	13	8.8e-07	7.2e-05	23.6	1.2	1	23	648	670	648	670	0.99
13	13	6.1e-06	0.00049	21.0	0.7	1	23	676	698	676	698	0.97

Sequence Information

Coding Sequence: ATGTCAAGTGAATTATTTTCTAAATGTCGCACTTGCTTAAGTTCTTGCGATATTTATCACCAACTGCTTGATTATGTGGATGAAAATTGTAAAATCCTCGATATGTTGGATGGTTTAGTGCCCCAAATAGATGTTAAGGCCACCTCGCAGTTTTCCACATTAGTGTGTCAGCAATGTGTGGGTAAACTGTTAACAAGCTATAAATTTCAACAATTGTGTATTGATACTAATAATCGTCTGCATGAATTGCTGGGTATTGATGTCTTTGAGTCGCAGTCAAAATTGGAAAATATATTAGATCCATTGATGGGCGATTCGGACATAAAGATGAAACAGGAAATTAAGGACGATGCAAGCTTTGAATGCGAAATACTGCCAGAAAAATTACTGGAGGAGAAAGATTCAAATAATGACTGGAGACCGCGTAAAGCTAGTTGTAGTGATTCGGATTCTAGCAATGAGAAACTATCTCTTTTAAAAGTAATATCAACGAAAGAATTACCTTTTAGAGATGAAAGTCTGAAAAAAACTAAAAAGATAAATCGTAAAAAAGGCACTTTTTCCTGTTCCGAATGTGGAAAGGTATTAACAAGTTTAAATCGCCTTAAGAAACATACAGCTATACATGATAGAAAGCCGGCTTATCAATGTGAAATTTGTAATACTAGTTTTATGGTAGAAAAAGCCTTCAAAGTTCATATGCTAGTACATACAAATGAAGAAGGTGCCCTTAAAATAGATGAGGCAAAACAAAATGACAGTATTAAGGATAACAACTCGAAAGAATATTTAGAGTGCGAAGAGTTAATAGACGAAATTAAAGCGAATGAAACGATAAATAAAAAGGAAGATGATTCTAAGAAACTACCAACATTTCAATGTTCAGAATGTCTGAAATGTTTTGAAAGAAAAGCTTCACTGTCAATCCACTATAAAATACATAACAAAAAGGAAAGAAAAAAATTGAAAGAAAAGGATAAAATTTATGTTCAGAGGCAGAGGGGAATTAAAAAAACTACGAATTTATCTAAAATAATGGTAAAAGAGGAATTTAAACTAAAACCAGGAATTATTAAAGAATCCATTAATAATTTTGATGAACGTGGAGAACGTTTTAATAACGATAATGGTGTTGAGTCAAAAGATAATAATGAAGATGAACTTTTTGTAAAACCTGCTGCAAAAGAAACGAAAAATATTGATAATATAGAAAGCGGCATAGAAGTAATAGATAAGCCCAATAGCAGCAAAAAACCTATTGGTAACTTTCCTTGTGAAATATGCGGCAAGGTTTTTCATCGTCCTTATCGCCTGAAACATCATAGTTTTGTGCATTCTTTGACCAAACCGCATCCCTGTATGGTTTGTCAACGCAATTATATGTCTGTAAAATCCTTAACCGAACATATCATTAGCAAACACCCCGAAGTCGAAAAGCACAAATGTGATCAGTGTGAAAAGACATTCGTTTTACATGCCCATTTAATGGAACATTTAAAACGTCACAAACGCAAGAAAAACCGAGTGTGTCCTATATGTGAAAAAGTATTCAGTTATTCAAATTCTTTGAAGATTCACATGCGAAAGCATAGTGGTGAGAGTACATATCTATGTCCTCAATGTGGTAAAATATTTACTACTTCAGGTGGCTTGCGTCAGCATATGGAACGCCATGCGGGCTTAAAAAAATACCAGTGTCCAGAATGTCCCAGTCGCTTTAACTGTCGATCAGATGTGATAAAACATGCAGCGATACATTCAAATGCGAAGCCTCATGTCTGCGATATATGTGGTTCTAGTTTTTCGAGAGCGCTTTCATTGCAAAAACACAAGATTTTGCATTCGGGTGAAAGGCCTTTCAAGTGTGATCAATGTAGTATGACATTTTCTGTAAAGTTTCGCTtgcgccgccatatgcgcacccatactggagaaaaaccctacaaatgcaaatactgtgaacgtgcttattccgaaagtggagatttaacaaaacatttgcggacgcatgtaggcgaaaatacctatatgtgtgaCCAATGTCCCAAGGCCTTTAAATATCAAGCAGAATTAAGGCAGCATCAATCTCAGCATTATAAAATGGCCAAAAAACTACAGCAACAAGCTGAAAAAATGCCCGAAAAAGTACAGCAAAATAGAATAAGTGAACAAATACAGCAAGAGAATTGA
Protein Sequence: MSSELFSKCRTCLSSCDIYHQLLDYVDENCKILDMLDGLVPQIDVKATSQFSTLVCQQCVGKLLTSYKFQQLCIDTNNRLHELLGIDVFESQSKLENILDPLMGDSDIKMKQEIKDDASFECEILPEKLLEEKDSNNDWRPRKASCSDSDSSNEKLSLLKVISTKELPFRDESLKKTKKINRKKGTFSCSECGKVLTSLNRLKKHTAIHDRKPAYQCEICNTSFMVEKAFKVHMLVHTNEEGALKIDEAKQNDSIKDNNSKEYLECEELIDEIKANETINKKEDDSKKLPTFQCSECLKCFERKASLSIHYKIHNKKERKKLKEKDKIYVQRQRGIKKTTNLSKIMVKEEFKLKPGIIKESINNFDERGERFNNDNGVESKDNNEDELFVKPAAKETKNIDNIESGIEVIDKPNSSKKPIGNFPCEICGKVFHRPYRLKHHSFVHSLTKPHPCMVCQRNYMSVKSLTEHIISKHPEVEKHKCDQCEKTFVLHAHLMEHLKRHKRKKNRVCPICEKVFSYSNSLKIHMRKHSGESTYLCPQCGKIFTTSGGLRQHMERHAGLKKYQCPECPSRFNCRSDVIKHAAIHSNAKPHVCDICGSSFSRALSLQKHKILHSGERPFKCDQCSMTFSVKFRLRRHMRTHTGEKPYKCKYCERAYSESGDLTKHLRTHVGENTYMCDQCPKAFKYQAELRQHQSQHYKMAKKLQQQAEKMPEKVQQNRISEQIQQEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -