Pmel008143.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000813.1:517632-532577[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.6e-06 0.00046 21.1 1.3 1 23 205 227 205 227 0.97 2 18 0.00011 0.0089 17.0 0.5 1 23 233 255 233 255 0.97 3 18 4.8e-05 0.0039 18.2 0.6 1 23 261 283 261 283 0.98 4 18 3.6e-06 0.00029 21.7 3.0 1 23 289 311 289 311 0.97 5 18 4.8e-05 0.0039 18.2 4.7 1 23 317 339 317 339 0.99 6 18 8.4e-05 0.0068 17.4 5.6 1 23 345 367 345 367 0.97 7 18 4.1e-07 3.4e-05 24.7 4.3 1 23 373 395 373 395 0.98 8 18 1.5e-07 1.3e-05 26.0 2.4 1 23 401 423 401 423 0.97 9 18 9e-05 0.0073 17.3 6.7 1 23 429 451 429 451 0.97 10 18 0.00015 0.012 16.6 6.6 1 23 457 479 457 479 0.98 11 18 1.4e-05 0.0011 19.9 4.5 1 23 485 507 485 507 0.98 12 18 5.2e-05 0.0042 18.1 8.3 1 23 513 535 513 535 0.98 13 18 2.5e-06 0.0002 22.2 7.9 1 23 541 563 541 563 0.98 14 18 9.2e-07 7.5e-05 23.6 7.7 1 23 569 591 569 591 0.98 15 18 0.00029 0.023 15.7 9.5 1 23 597 620 597 620 0.95 16 18 0.00024 0.02 16.0 0.5 1 23 626 648 626 648 0.97 17 18 0.00035 0.029 15.4 4.5 1 23 658 680 658 680 0.98 18 18 2.4e-05 0.0019 19.1 0.7 3 23 688 709 687 709 0.98
Sequence Information
- Coding Sequence
- ATGCAGCACATATCAACTGCGGCAACATCTGGCAGTCCGGCTACTTCTGGTGCAACCACTATAACACTGGGAGCACCTAAGACGGAAATTAAAGACGATGGTAACGTAGTTATGGGCGGAAAATTAAATTCTGGCTTTGAAATGTATAAAGTAAATATTGAAGATATATCTCAACTATTTACCTATCATGAAGTATTTGGCAAACTACACGGCGATGCCATAAATAATCATCCCTTGGCAGTAGCTCATGCAGGCTTGCCAGCTGCTGGCAATAGTAATATTTCTACCGCAGTTTCAGCTACTACCACCAGTTCGGGTGAGGGAAATAACACCACTGGAGTGTCTGTGGTAACCAGTAGTGTCCCCATGAGCGAAACTACCAGTACTAGTACAGTTGGTACTGGTGGGTTGGTCGCTACAAGCAGTACAGCGGCTAACCTAACAACATCTATAGCTACAAACTCTAATACAATAGCAACTGCTGGTACGGCAGCAACTTCTGGTTTAACAGCTACAGGCTTACTAATGCCAAAAATGGAAGGAGGCATAACAAATGTAGAGCAAAGTACCGTTACTTTGGCCCCCGACGGTACAGTGGTGTCGACTGGCGAACATGTTTGCGATATATGCGGAAAAATGTTTGCTTTCCGTTATCAGTTAATCGTGCATCGTCGCTATCACACCGAACGTAAACCTTTTAATTGTCAGGTCTGTGGTCAGGGCTTCTTTACTTCTCAGGATCTTACACGTCACGGCAAGATACACATTGGCGGACCAATGTTTACCTGTTTAGTGTGTTTCAATGTTTTTGCCAACAATGCCTCTTTGGAACGTCATATGAAACGCCATTCGACAGATAAGCCCTTTGCCTGTACCATATGTCAGAAAACTTTTGCCCGCAAAGAACATTTGGAAAATCATTTTCGCTCGCATACTGGTGAAACTCCATTCCGTTGTCAATACTGTGCTAAAACATTTACACGCAAAGAACACATGGTAAATCATGTTCGCAAACATACGGGTGAGACACCACATCGTTGCGAGATCTGCAAAAAATCGTTTACGCGTAAGGAGCACTATGTTAATCATTATATGTGGCACACTGGTCAAACACCACATCAATGTGAAGTATGTGGTAAAAAGTATACACGCAAAGAACATTTGGCAAATCATATGCGTTCTCATACAAATGATACACCATTTCGTTGCGAAATTTGTGGCAAAAGTTTTAGTCGTAAAGAGCATTTTACTAATCACATATTATGGCATACAGGAGAAACTCCTCATCGTTGCGATTTCTGTTCGAAAACATTTACGCGCAAAGAACACTTATTGAATCATGTACGCCAACATACAGGTGAATCACCGCACCGTTGTACATATTGCATGAAAACGTTTACACGTAAAGAACATTTGGTCAATCACATACGACAACATACTGGTGAAACACCCTTTAAGTGCACTTACTGCACCAAAGCCTTTACGCGAAAAGACCATATGGTCAATCATGTGCGTCAGCATACTGGTGAATCGCCACACAAGTGCACATTTTGTACGAAAACGTTTACGCGCAAAGAACACTTAACGAATCATGTGCGCCAGCATACCGGTGATTCACCGCATCGTTGCACCTATTGCAAAAAGACCTTTACACGCAAGGAGCATCTCACGAATCATATTCGTTTGCATACCGGAGATTCGCCGCACAAGTGTGAATATTGTCAGAAAACCTTTACGCGCAAAGAACATCTCAATAATCATATGCGTCAACACTCTAGTGATAATCCGCATTGCTGCAATGTCTGTAACAAGCCATTCACGCGCAAAGAACACCTAATAAATCACATGTCACGCTGTCACACAGGCGATAGACCATTCGCGTGTGAAACTTGTGGAAAATCATTTCCGCTCAAGGGTAATTTACTCTTCCATCAACGCAGTCATACTAAGGGCCAGGAAATGGAAAGACCATTTTCATGTGAAAAATGTCCGAAAACATTTATATGCAAAGGTCATTTGGTATCCCACATGCGCTCTCACTCCGGCGAGAAACCGCATGGTTGTACTTTATGCAGCAAAGCATTTGTGGAGAGAGGAAATTTAAAGCGTCACATGAAAATGAATCATCCAAATGCTCCAATGCCACCACCCCCAGTGCCACATCCAGTTATACCAGCAGGAGTTTTGCCTCAAATTAAACAAGAAGTTAAACCAGTAATCAGTGAATTAAATCCCCTGCAAATTACAGCTCCTACAATGCATACCATACAGCaaataacaggaggtgcagaagcaaatactgttcaactaacaacaggtttgacgcctttagtaacgtcaacaataacatcgcattcgacacaaaaacaagcaactcaaacgcaagctcaagttcagcaacaacaacaacaacaaatgcagcagcaacaagtagtagctacacatccacaacagcaacagcaaccacaggtgacaactcatcagcaggttttacaacagcagcaacatcagcagaatcaattattacagttgtccatacaacaagccgctgcgactgcagctcagcaacaaatacaacaacagcagcaacatcaagaacaacaacgtcaacatcatcaacaacagcagcaacaacaacaacaggctcaacagcaggctcatcatcagcaacaaacagcatctaatgttacagtcgtggctgctgcccatcaacaacagcagcaacaacaacaacagcatcaacaacaacaacagcagcagcaacaacaacagccatctcaacagcaacaacaaccacaaactcaacagcaaccaccacaagtgccaatcGCTTTAATACAAACCGATCAGGAAGCTTTGGCTCGTGCCACCATGCAACAAATGCAGCATATGCCCGCTAATGTTGAACAACATCCCGTTGTTTACTAA
- Protein Sequence
- MQHISTAATSGSPATSGATTITLGAPKTEIKDDGNVVMGGKLNSGFEMYKVNIEDISQLFTYHEVFGKLHGDAINNHPLAVAHAGLPAAGNSNISTAVSATTTSSGEGNNTTGVSVVTSSVPMSETTSTSTVGTGGLVATSSTAANLTTSIATNSNTIATAGTAATSGLTATGLLMPKMEGGITNVEQSTVTLAPDGTVVSTGEHVCDICGKMFAFRYQLIVHRRYHTERKPFNCQVCGQGFFTSQDLTRHGKIHIGGPMFTCLVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGQTPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHVRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGDSPHRCTYCKKTFTRKEHLTNHIRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQEMERPFSCEKCPKTFICKGHLVSHMRSHSGEKPHGCTLCSKAFVERGNLKRHMKMNHPNAPMPPPPVPHPVIPAGVLPQIKQEVKPVISELNPLQITAPTMHTIQQITGGAEANTVQLTTGLTPLVTSTITSHSTQKQATQTQAQVQQQQQQQMQQQQVVATHPQQQQQPQVTTHQQVLQQQQHQQNQLLQLSIQQAAATAAQQQIQQQQQHQEQQRQHHQQQQQQQQQAQQQAHHQQQTASNVTVVAAAHQQQQQQQQQHQQQQQQQQQQQPSQQQQQPQTQQQPPQVPIALIQTDQEALARATMQQMQHMPANVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -