Pmel005515.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000521.1:146341-148200[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 1.8e-05 25.0 0.0 2 39 12 49 11 53 0.89 2 2 5.7 7.2e+03 -2.6 0.0 26 39 169 182 168 186 0.78
Sequence Information
- Coding Sequence
- atgccaaaTAGAGAATTAATTAGAAAATGGGACCCGAATAATATGAGGTTAGCCGTGGAATCAGTAAAAAAAAATGAAATGGGGATAACATTCGCCTCAAAAACCTTCAACGTTCCTCACACAACACTTTACAGAATGGCAAGAAGTAACACAGGTATAACCGAACTTTTGCAGACACCTTTAGGTCGAAAGCCAGTCTTTTCTAAAGAAATGGAAGCCGACTTGGTAAAATATGCCCTAGAAATGGAGTCTCGTTACTGGGGTCTTACTCGGAGTGATATCCGATCCCttgcattccagcttgcgaaaagaaacggtgttttgaacaacttctccatcataaaagagtgcgctggcaaagattggctatatggatttttgagacgacataaaaataagctaagcatacgtgcaccaacaggtacttcctttgacagagcaaaaggtttctcccgtgaaaatgtgaaattgttttttgatattctcgaaacagaatattgccagtacaactttcctgcaacctctatatggaatgttgacgaaacaggtctctccgttgttcaaactaaatatccgaaagttatagcaaataaggggaaacgacaaattggtgcaatgacatcagctgaacgtggttcccttattacagtaattacttgtatgagtgcgggtggctcatttgttccaccatttttcatatttccgcgcaaaaatgacaacccacaactaatgaaaaatgccccacctggttctacttcggtgtgccacatatctggttgggttcaaacagatatttttacaaaatggttcaagcattttctaaagttcgcgaaacctacaaaaaatgaacctcatttactcattttagatggacattacagtcatacaaggaacattgacttattagagctagctcgtcaaaatggcgtgacaattatttcacttcctccacactcgagccacaaaatgcagcccttagacaagacatttatgggacccttaaaaatttattacagcgaagaaatcaggagattcactagggaaaatgcacgaaaagtcactcaatatgacgtgtcagagttatttgctagagcatacctaaaagtgcaaatgggtgagattgctataaatggttttaaatgcactggtatttatccatttgataggagcatttttaaggagtctgattttgttgcaggtgaaataattgaaaatgaacaccTTGCAAATTCTTTTACCTTAGAAAATGATTGTGAAACATCAAAAGTAATTGATAAGGGAAATGCCACAAATTCAAAAAAAGGACCTGAGGCATCTCTTAGTATTGAGAAAAACTCCGCTAGAAATAGAGTTGCGACTAATTTGAATATAGATCCTTCCCCAAGTACAATAAGTTCCATAACACCTTGGCAAATATCGCCTCCTCCAAAAATACAACGCCCATCCACAAGTCGCCAAGGAAGAAAAACTAAACCAACCGTTCTTACTACATCCCCTTATAAAAACGAATTGCAAAAAAGTGTGGATTCAATCAAAAAGCGCAAGGAGAAAGTGCAGAAACCTAAAAAAAAGGTTGAAAAAAATGCTATCAATAGTAAGAAACGTCGAATGCCCACAGTATCATCATCAAGTGATTCAGAAACAGAGCTAATTTTACATGACTCTGATGGTGATGAACTTTTCCCTGATTTTCCGTCTAATAGAGAAACTAAATGCATGTTTTGTAATATTTCGTGTAACGAAGATAGTTCATCCAAAAAATGGGCACAATGTTTACAGTGTGATATAGTTTGGGCCCACGATGAATGCCTTCCAAAAAAGCAAGCAATTTTCATGTGTGAGTCCTGTTTGAAGGCATAA
- Protein Sequence
- MPNRELIRKWDPNNMRLAVESVKKNEMGITFASKTFNVPHTTLYRMARSNTGITELLQTPLGRKPVFSKEMEADLVKYALEMESRYWGLTRSDIRSLAFQLAKRNGVLNNFSIIKECAGKDWLYGFLRRHKNKLSIRAPTGTSFDRAKGFSRENVKLFFDILETEYCQYNFPATSIWNVDETGLSVVQTKYPKVIANKGKRQIGAMTSAERGSLITVITCMSAGGSFVPPFFIFPRKNDNPQLMKNAPPGSTSVCHISGWVQTDIFTKWFKHFLKFAKPTKNEPHLLILDGHYSHTRNIDLLELARQNGVTIISLPPHSSHKMQPLDKTFMGPLKIYYSEEIRRFTRENARKVTQYDVSELFARAYLKVQMGEIAINGFKCTGIYPFDRSIFKESDFVAGEIIENEHLANSFTLENDCETSKVIDKGNATNSKKGPEASLSIEKNSARNRVATNLNIDPSPSTISSITPWQISPPPKIQRPSTSRQGRKTKPTVLTTSPYKNELQKSVDSIKKRKEKVQKPKKKVEKNAINSKKRRMPTVSSSSDSETELILHDSDGDELFPDFPSNRETKCMFCNISCNEDSSSKKWAQCLQCDIVWAHDECLPKKQAIFMCESCLKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -