Pmel025611.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- lola
- Assembly
- GCA_941918875.1
- Location
- CALNXE010005034.1:31864-34270[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-11 1.8e-08 34.6 0.0 4 45 421 462 418 462 0.91 2 2 6.1 7.8e+03 -2.7 0.9 4 20 559 574 559 574 0.86
Sequence Information
- Coding Sequence
- ATGGGCGGTCCACCAGCCCCTACCACCTCACATGGACCCCCAGAGGGTCAAACGTATTGCTTGCGTTGGAATAATCACAAATCGAATTTGGTTGAGATTTTAGATGCTCTCATCAAAGTTGAAAGTTATGTGGATTGTACCATAGTCGTAGACGATCAGGTGCAATTTAAGGCACATCGTGTAGTTTTGGCTGCCAATTCACCATATTTCCAGTCTATTTTACAGGATATGCCAATGGATCATTGTAGTATTATATTTCCGGGAGTTAAAGCTTTTGAAATGCGTGCTCTGTTAGAGTATATGTATACGGGCGAAGTAAACGTAACACAAAGTCAAATTCCTAAAATAATGCGTATAGCCGAAGAATTGGAGGTAAAGGGTCTCTTCGATATGGCTGATTTAAAGGAAAAGTTTAGTAAATTAAGTGAAGAACATGCCGAAAGATCGGCAAGTAATCCGTATGCAAGTACAACAGCACCTTTAAATCCATATAGCTCTATTACCACAACCACATCACCACCAGGAAATATAGGGCCACACAAGTTAACACCTAAAGATTCAGAAATCTATCGCAACAATTCCTCCTCGGTGATCTCTACGTCTGCAAATATTTCTCCCTCAGCAGCCCCCTCAAGCAGTTCATCACCCCCCTACAGCAACTACAAATCTCCCTATTCCAGTTTATATGCCAAGTCTCCGCTACCCACTGCAAATCAATCTTCTGCGGCCCAAACCCAATCCAGTCAACAAACGTCCAACAGTTTGGCACCCACCAACGAACGTTCCGCCCAATGGCCATTATCACCCTCGGCTGCTGCTGCTGCCATGTTGAGTTCTGTATATGAATCTGCTCCCGATATGAATCCTTTAAAGCGCAAGAAGCTCTCCTCCATGTCTAGTATGCTAATGAATCGCGACACTCCTATTTTGCGAAATGTTTTGGATCCAGCTAATCCGCCAGATTCCTCCCAACAATTGCCTCTACTTTTACCAAATGCTGGGGCAAATAACAAGATTGACAAATCGTCTGGATCGTCAGGAAATATTGAAAAGAATTTAGGTGGCCATAACAACAATCACAGCTTTAATGGTTCCGATTATAGTGATAAGAAATACCCGGATGAACCCCATTCTCCCTTTACCGATCGTTCGTTTGAAGATGATGGTTTCGATCCCAAGGGCAGCAGTTTTGGTGGCAATTTCGGCGGTAATGCTAATCAAAAACCCGAATGGAAACGTTATAAGCAGTACACTCGCAGTGATATCATGTCTGCCATTCAATGTGTTCGCGAAGGTATGAGCGCTCTTCAGGCTTCCCGTAAATTTGGGGTGCCTTCTCGTACACTTTATGACAAGGTTAAGAAATTAGGTATTACTACGGGTCGTCCGATGAATCGCACCATGAAACGCAGTCCCAGCAGCATCGAATCATCGGCTGCCTTTCCCTATGCCCATGGTTATGGTCAAGCTTCGGCGGCTGCTGCAGCCATCCATGATGCCGTTGTACGTGAGGAACGCGAATTGAAGGAACATCACCGCAACAATGATCATCATCACTTACCACCTACTATTCCTCATCCTGCCGCTGCTTTGTTAGACCACGCCTTTCTGCAACAAGCTTTAGAAAATCGCGGTGGTGGCGATATAGCGGGGCGTGAAGCTTTACACGCAATGGCTCTTGCCGCTGCTGCTCATGCTGCCGCCAATCGCATGTCCACCAGCCCTGGACCTAATGGTAATGCTGTACGCTCTCCCAGTCCCACTAATTTTGCCTTAAAATACAATAACTTACGTAATACCGAGCAAGAGCTCATAGAACGACAGGAAATGGAACGTGAGCGTCAGCGAGAAATTGAATTTGTTGAACGCGAAAGAGAACATGCACGGGACTTGGTGCGTGAGCGGGAACATGAGGACGAAGAAGAAGATGATCATGTTGAGGATTTATCGGTGACTCGCAAAGACACAAACAATTCTCCTTTAGAATCCAGAGAAAGGCCAGAATCACCTTACTCACCAGAAGTAGCAGTCCATAACGATAACGAGAAATCCGTTATAATGTCCACCAAGTTACCCACAAATCCCAGTGATGATAATGCCTCCTTTATCAATGACACCAGCATGAAGCGTGAGGTGATTATTGATGATGCCAGAGCTGATTGA
- Protein Sequence
- MGGPPAPTTSHGPPEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDMPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFSKLSEEHAERSASNPYASTTAPLNPYSSITTTTSPPGNIGPHKLTPKDSEIYRNNSSSVISTSANISPSAAPSSSSSPPYSNYKSPYSSLYAKSPLPTANQSSAAQTQSSQQTSNSLAPTNERSAQWPLSPSAAAAAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLDPANPPDSSQQLPLLLPNAGANNKIDKSSGSSGNIEKNLGGHNNNHSFNGSDYSDKKYPDEPHSPFTDRSFEDDGFDPKGSSFGGNFGGNANQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSIESSAAFPYAHGYGQASAAAAAIHDAVVREERELKEHHRNNDHHHLPPTIPHPAAALLDHAFLQQALENRGGGDIAGREALHAMALAAAAHAAANRMSTSPGPNGNAVRSPSPTNFALKYNNLRNTEQELIERQEMERERQREIEFVEREREHARDLVREREHEDEEEDDHVEDLSVTRKDTNNSPLESRERPESPYSPEVAVHNDNEKSVIMSTKLPTNPSDDNASFINDTSMKREVIIDDARAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258994;
- 90% Identity
- iTF_01201728;
- 80% Identity
- iTF_01201728;