Pmel012076.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phyto melanocephala
Gene Symbol
ttk
Assembly
GCA_941918875.1
Location
CALNXE010001345.1:101287-110517[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.4e-19 6.8e-16 58.3 0.0 2 45 576 620 575 620 0.97
2 2 8.5 1.1e+04 -3.1 0.7 3 11 653 661 653 664 0.82

Sequence Information

Coding Sequence
ATGTCTGTGCAACAattttgtttacgctggaataatcatcaaccaaattttatttcggtatgctcatcattactacataatggcacactggtggatgttacacttgctgccgaggggcgtcagttgcaggctcataaaattgttttatccgcatgcagttcgtattttcagACCCTTTTTAccacaaatccatgtcaacatccaattgttatattaaaagatgtgcaatatgatgatcttaagacaatggtcgattttatgtattatggtgaggttaatgtatcacaagagcaactcccacatatattgaagacggcagaaatgcttaagattaaaggtcttgccgaaatgcCCACTGATCCTGCTAATTTAACAAAATCTGATAGTAAATCATCGAATGATGCTACAGAATTGGTCGGTGGTAGTGGCGGAAACAATGGACAATTAGCtggtaataatggtggtggtggtagcaacactgcaggcggtggtggtaatactagtggtttaggtagtagcagtggcagtgttaacgactcaatttggggtagtaatgaatcacaatttcaacagcaacagcagcaacatcaacaacagcaacaacatcaacagcatcaccaacaattacaacaacagcagcagcaacaacagcaacaccatcaccaacagcaacatcagcagcaacagttgcatacacaactgcaaaacagtcaaacacaaacctcacaacaacaacagcagcaacaacaacatcatcagcagcaattaaggcgcacaccatcgccattaggcgctggcgcctcaCCAGCCACGCGGCGAAAACGTTTAAGAAAATCCTCTAATAATGGGTCGGGTGAACGCACCAATTCTGAAGATCACACTTCTTTGGATGCCGCTACAGCTGGTGGTCTAACCTTGTCCCAAATGAGCCAAATGTCATTTGGTGGTGGCGCAGCTACAAATAGTGCTCTGGGTGGTTTAGCCGCACACTCCTTACACACAGCTAAATTACTTAAGGAAGCTTCTAACAATGACTTGGAAACTAATCCACAAGATTCAGATAGTTTAGACGATACACATGGACATGTGCATATGCAAATTAAACCAGAAGTTGATATGAGCGGAGTGCCACAGTCAATGCCATTAAATATATCAGGCCCAACATCGCCCTCCGAACATGATGCACCAAATTCACAATCCGCACATTCAGGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGCTTTTCGCTGTCATCCTGTCCCACCAATTTAATTggcaataacaatcaaaacacaaatgccaacaacaataatagctcgagtagtgatcagcagcaacaacaacagcagcaacatcgtcagcagcaggaagccgttgctagtcaacagcaacaacaacaacagcagcaacagcaacaacatttgcagcagttgcaacagtaccagcaccaacagaactctgcttattctccacaaataataacagtcagtggttacaccaatgcggcagcagctgctgtggcggcggctcaaaatttgtcACCACCCTCACCCAACGATGGTAATATGGTGCAATCAGTATATAGCCAAGGACCTACGCCCATTCAATCACCGGTTGGAAATGCTTCGGGTTCTGGCGGTGGTAGCAATATGTCTGGTAGCGGAAATTCATCCAACAATGCTAATATCAAACGGAAGCGTTCGGTCAATCCACAAGGTGATGAAAATTTTATACGGGCACTGGAGGCAGTGCGTTCGGGTGGTATAGGTTTCTGTAAAGCAGCTCGACTGTATGGCGTCAATAATCGTACTTTATGGCTAGAGTATAAAAAACGTGGTTATCCTGTGTCCAGGCCCAGTATAAAATCACGTGTGGTCAAGCAAGAACCGAATCTCTCACCTTCTCCCACACCACCTGCCAATGCCACCGATGACACCAATGAAAACTACGATCATATGGCAGCAGCTGTGGCGGCTGCACAAACGGCTGCTCTTAATATGCAAATACCACCGACTTCCGAAACACCGACACCGTCCTTAATGTGTACCCCACATCATTCAGGTACAGCTGCCGGTGCTACCACACATCCCACAATGGGTGTAATGAGTTTCTTGGATACCCGCCACATGGACTTCCCAGCCAGTCTGCATTCAATGTCACGTCAGCGTTATATTGATGCCGGCACTGGCAGTGGACCTGGTACGGGTACCATCAATGTTAATCCAGCAACGGCAATGAATTTACAGAGTATTAATTTCAACTCAATATAG
Protein Sequence
MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSNDATELVGGSGGNNGQLAGNNGGGGSNTAGGGGNTSGLGSSSGSVNDSIWGSNESQFQQQQQQHQQQQQHQQHHQQLQQQQQQQQQHHHQQQHQQQQLHTQLQNSQTQTSQQQQQQQQHHQQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGERTNSEDHTSLDAATAGGLTLSQMSQMSFGGGAATNSALGGLAAHSLHTAKLLKEASNNDLETNPQDSDSLDDTHGHVHMQIKPEVDMSGVPQSMPLNISGPTSPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSCPTNLIGNNNQNTNANNNNSSSSDQQQQQQQQHRQQQEAVASQQQQQQQQQQQQHLQQLQQYQHQQNSAYSPQIITVSGYTNAAAAAVAAAQNLSPPSPNDGNMVQSVYSQGPTPIQSPVGNASGSGGGSNMSGSGNSSNNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPANATDDTNENYDHMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHSGTAAGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGTGSGPGTGTINVNPATAMNLQSINFNSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01397556;
90% Identity
iTF_01236810;
80% Identity
iTF_01201720;