Pmel012072.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- bab2
- Assembly
- GCA_941918875.1
- Location
- CALNXE010001345.1:66304-68172[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-07 0.00053 20.3 0.0 6 39 400 433 397 437 0.82 2 4 1.6e-13 2.1e-10 40.8 0.0 5 44 453 492 450 493 0.92 3 4 0.026 32 4.9 0.0 27 38 522 533 518 539 0.88 4 4 1.3e-14 1.7e-11 44.2 0.0 4 41 561 598 561 600 0.92
Sequence Information
- Coding Sequence
- ATGAACAATTTAAAGTGGATGGGCCATTCGGCCACAATATTAGATATACACAAAAATCTACGAGACGATCTGAAGAGTTGTGATGTTACTTTGGTGGCTAAGGGTCACAGTGTTAAAGCTCATCGTTTTGTACTATCCTCCTGCAGTGATTTGTTGCGTTGTCTTTTAACGGATGTGCCCATTGGCCAGGAATGTTGTGTCATATTACCCGACATAAAAGGTCATTTGCTAGACAATGTATTGGCATTTGTATACATGGGCGAGTGTTCCTTATCATCAACAAACTTGTCGGAATTCTTAGAGGCCATCAATGTAATGGGTATAAAGAGTGCTATAAGTTTTGAATGTAATACAAATGCTTTGCAGGCAGCTCAAAATAGCGCTACAACATCTAGCAATACACAAAACAGCATCACACTAGATAATAGCACAACAATGGTGCCCGCTAGTACGACATTGGCCACTCGCCAAGTAACCTTAGTTGGGGGTCCAGAAGATACCTTGCATCAAGAAGAGATAATCGAAACACACAGTGTAATTCATACAGAGCCTAGTACTACGAATACTGTAAGCAATGCAACCACAACTCGGGAGCTGGACTTTCTGGATGTGTACCATGAACCACAACATAAAATCACTTATTCCATCGAACATGTACCAGGGTCAGGGACGGGCAACGAATTTATATTAACCGAAAATTCTGGCACTTTTACACTTACCCATAGTGGCAAATTGGAGCCAACTGCATCACCGGCCGAATCCTCTACGATGGAAGTAAACGAAGATGACGGTTGTGAGTCACATATAATAGAAGAATACAGTAGTGGCGAAGAACCTTTAATACAAATAGGTGAGACGGGTCATGAGCAACATACTGTAACAGTAGTACAGGCAGCATCACATCAAACACAACAAATTACATCTATACCTGCAACAGCAACTTCAATAGTACAGGTTAAACCAAAAATTAAAACTCTCAAGGTAAAACATCATCAACCTGCCCCGCAACAAATTCTAGCCAAAATAGAGCAGCTGCCAGAAGACGCGACAGCCAGCGATGATCCCATATCAATACTACAAACATCCAATGAAAGTTTCACCCTGCTTAAAGATGCTAGCATGATAACTACCAGCAATACTAGTCACGACGAGTCGACAGAATTTTCCATGAACAACTCTGCCTCATCATCGGCCATTGATTTAGCTTACCAAGCTATGGTTAGTGCAGGCATGTCTTTGCCGAAAGCTGCTGATAAGTTTAATGTATCAAAAGCAGAACTATGGCGTCGAGTGCGTAGTACTGGTGTCGAACAGCTCAACAAATCAGATAAACTAGATCCAGATAAAATCGATGTTATCGAGCTGGCCAGCAGAGCAGTAATAAACGAAGGCTTATCACTGCAAAAGGCCGCCATGCGTTATGATATCTCGAAAACAGTGTTATGGCGCAGGGTACGTAAACATCCGCAATATATGAAAACAGCACGAGAGAATCCTATAATAGCAAAGGCTTACGAACGTTTAAAGTCGGGTGAATCCCTTAAGAGCATATCACAAGATCTAGATATACCTATGTCAACTTTGCATCGTCATAAGGTGCGACTGTCGCAAACCGGTCAGTTACCCGATTTTGTTACGTGCAAAAAACGCGATAGCATGTCTAAAGATGATCTCAAATTGAAGCTTTCAAAGGCCGTGCATGCTTGCGTGCATGAGGGTATGTCTCAAAATCATGCCGCTAATTTATTTCAAATTTCCAAAAGTACCCTATGGCGACACCTACAGAAACGCGTAGCCGAAGCTGAGGCAGCCGAGACTGAATCTATGGGTGATGAGGATGAAATTAAGCAAGAAGTCATACTTTCATAA
- Protein Sequence
- MNNLKWMGHSATILDIHKNLRDDLKSCDVTLVAKGHSVKAHRFVLSSCSDLLRCLLTDVPIGQECCVILPDIKGHLLDNVLAFVYMGECSLSSTNLSEFLEAINVMGIKSAISFECNTNALQAAQNSATTSSNTQNSITLDNSTTMVPASTTLATRQVTLVGGPEDTLHQEEIIETHSVIHTEPSTTNTVSNATTTRELDFLDVYHEPQHKITYSIEHVPGSGTGNEFILTENSGTFTLTHSGKLEPTASPAESSTMEVNEDDGCESHIIEEYSSGEEPLIQIGETGHEQHTVTVVQAASHQTQQITSIPATATSIVQVKPKIKTLKVKHHQPAPQQILAKIEQLPEDATASDDPISILQTSNESFTLLKDASMITTSNTSHDESTEFSMNNSASSSAIDLAYQAMVSAGMSLPKAADKFNVSKAELWRRVRSTGVEQLNKSDKLDPDKIDVIELASRAVINEGLSLQKAAMRYDISKTVLWRRVRKHPQYMKTARENPIIAKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01201752;
- 80% Identity
- iTF_01201752;