Pmel005616.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- retn
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000536.1:270850-301391[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-20 8.9e-17 61.9 0.0 16 89 11 82 4 82 0.93 2 2 3.5 1.4e+04 -2.9 0.0 12 29 216 234 213 253 0.48
Sequence Information
- Coding Sequence
- ATGCGAGATAAAGCCATAATGGCCATAATGAGAGGCACACCCATCAATCGTTTGCCAATAATGGCCAAGTCAGTATTGGATCTTTATGAACTGTATAATTTAGTTATTGCTCGTGGAGGTCTCGTCGATGTTATAAACAAAAAGCTATGGCAAGAAATCATAAAGGGTCTTCATCTCCCATCGAGCATAACAAGTGCAGCTTTCACATTACGAACACAATATATGAAGTATTTGTATCCATATGAATGTGAGAAGAAGAATCTAAGCACTCCAGCTGAGTTACAGGCTGCAATTGATGGAAATCGTCGGGAAGGTCGACGTTCCAGTTATGGTCAATATGAGGCAATGCACAATCAAATGCAAATGCCACAAATGGCTCGCCAATCGTTACCAGGCGGCATGCAGCAGATGTCCCCATTAGCGTTGGTAACTCATGCGGCTAACAACCAACAAGCACAAGCTGCTGCAGCTGCAGCTGCTGCACACCACAGACTGATGGCACCTTCGTTCGGTCAAGTTCCAAATTTGGTGACGCAGGAAATCGAACAACGTATGATCGAATATTTGAAACTCATTCAAGTGAAAAAGGAACAAAATGCCATGAGCAATGGTTCAGGTCAAATGGGTCTATCACCTCACCATCAACATCATCAGCAGCAGCAACAGCGCCAGAGATCTCAAAGTCCTGAAATAAGTACAAGAGAAGCATTAAATGCGTTAGAAATGTCACGAGTGGCACTCTGGCAAATGTATCACAACAACACAAGCCCACCAACCTCTGTGAATACGTCACCACAAGGTGGTGGAAATGTGAATAGTGGTGGCACCAGCCATGATGTGGCTTGTGAAGCACAACACAGCGAGGCATTAAACCTATCCGATTCACCACCAAATCCCACCTCTATAAAACGTGAGCGAGAGCACGAACCCAGTCCTGAATTAAATATAAATAATGATTTTCACCAACAAGCCCCACCTGCAAAACGCGCCGGATTTCCATCCAGTTTTTATTTACCACCCACCCTAAGCAGCGTGGCTGCTGCCGCTGCGGCTAACTTCCACTATAATGGCAGTCATAATGACTTCGATGGCGAGGTTGACGAAGAAAACGACGATGATCAAGGCGACCACAATACAACAGCAAATTCCTCACACGATGATTCCAATGAACATCAGCACTTAAATAACAGTTCTCTGCGAGCACCACGACATCACGGCAGTAGTAGTGTTCACAATGACAAGTCAGACGATTCGGCAATTGAAAACTCGCCATCCACCTCTGGGGCATCGGCCGGCAATGAGCACGTTTCTCCTGTATCCACTAAAAAAATTCACTTGTCAAAGCAGACACAGCAGCAGAACAACAGCACAGCAACAGGGAATACTAGCACTGGGAGTACTTCCAACGAAAACATAAAGACGGGTAACTCTGCCTCGATGGGTTCATTCCAAGCATTAAATTTGCTATCGGGTATGCAGTTTTGTGTAACGCGTAATGATAGCAACTCTAATGGGGAACATGAGCTAATGGTTAACCTTGAATTGAATGGCATTAAATATTCTGGTATACTTATTGCAAATACATCAAATGTTACAACATCTCATGCAACAATAACATCGTCGACAACAATGGCATTAGTTGGTGACAATAGCTGTAGTAACAATAGTGTCAGCAACATTTCTAACAAAAATGACAATATTACACACTGTAGTCGAAAGACGGACAGTCAAAGTCCAATCAACAGCATTGTCAACAATAGCAACGAAACAGTCAGGAATTTAGCTGTTGCTATGGATTCAATAGAAAATACAAGTGATTTAACAAAGCGTGATACTGAAACACCACCAAACATATCTATAACAACAACAACAACAACAACGGCTACACCAACAACAAATCAAACAAATGCTGCCATAGCAAATTGTCAAAACGGCAGCACTGATACACCCAAGGATGTCCTTATAAAATCATAA
- Protein Sequence
- MRDKAIMAIMRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMQMPQMARQSLPGGMQQMSPLALVTHAANNQQAQAAAAAAAAHHRLMAPSFGQVPNLVTQEIEQRMIEYLKLIQVKKEQNAMSNGSGQMGLSPHHQHHQQQQQRQRSQSPEISTREALNALEMSRVALWQMYHNNTSPPTSVNTSPQGGGNVNSGGTSHDVACEAQHSEALNLSDSPPNPTSIKREREHEPSPELNINNDFHQQAPPAKRAGFPSSFYLPPTLSSVAAAAAANFHYNGSHNDFDGEVDEENDDDQGDHNTTANSSHDDSNEHQHLNNSSLRAPRHHGSSSVHNDKSDDSAIENSPSTSGASAGNEHVSPVSTKKIHLSKQTQQQNNSTATGNTSTGSTSNENIKTGNSASMGSFQALNLLSGMQFCVTRNDSNSNGEHELMVNLELNGIKYSGILIANTSNVTTSHATITSSTTMALVGDNSCSNNSVSNISNKNDNITHCSRKTDSQSPINSIVNNSNETVRNLAVAMDSIENTSDLTKRDTETPPNISITTTTTTTATPTTNQTNAAIANCQNGSTDTPKDVLIKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -