Pruf021535.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Physocephala rufipes
Gene Symbol
-
Assembly
GCA_963966595.1
Location
OZ016505.1:36299424-36304180[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0009 0.089 13.7 1.0 1 23 135 157 135 157 0.98
2 8 0.093 9.2 7.4 1.7 1 23 163 186 163 186 0.92
3 8 8e-05 0.0079 17.0 0.7 2 23 463 484 462 484 0.97
4 8 1.1 1e+02 4.0 4.0 1 23 490 513 490 513 0.94
5 8 0.74 73 4.5 0.4 2 10 623 631 623 642 0.84
6 8 0.0045 0.44 11.5 1.7 3 23 833 853 832 853 0.96
7 8 0.013 1.3 10.0 0.5 1 23 859 882 859 882 0.94
8 8 0.22 22 6.2 0.0 2 23 918 940 917 940 0.94

Sequence Information

Coding Sequence
ATGGACGATAGCGTTGATTATAGATTGGTATGCCGTACGTGTCTGGCTTCACAAACGGATTTTTATCAATTGGACGCTCGGGCGTTCTGGGATGATGATGAGAAAATTAGCTTTCTGGAGTGTCTcaaattttgtacaaaattggAAGATATTCCAGAATTCCCGATATATATCTGCACCGATTGTAGTACCGCTTTGCAAGTCGCctacaattttatgaaaaatgcaCTTGAGGCGCATGAGATTTTGCGGCAAAAACTTTGTAGTTCACAACCGTCGCGTATAAATCGGAAATATGAGGCAATGCAAGGGGtttgtaataaaacaaaaagttatAATATTCGCAAGGCATTACAATTTGACTTgtcaatatttgcaattttgcaGGATCGGAAGATAAGCTTCCGTTGTAAGATCTGTGAAGAAAGATTGGAGTCGAAGAAGTCATTGAAGGAGCACGTCAAACTACATATTGatattatttcatataattgtgaattttgttcgtataaaacacaaaaacgaaGCAGTCTAAATCAGCATTATATAGACATACATAATATGTCAGCTACCAAAGAGCAATTAAAACCACGTACAAAAAAATCAGATCCAATAGAGCCTCATAGAGCCATAGAGCCAGTAGAGCCACATATAAAGGATTTACCAACAAGTCAACCGGAAATTGAGAGCcataaaataatcaatgaaATAACGATAGATTCTGTAGATGAAAATCAATTTCCATATTTCCAAACTCAACCACTAAGAGAAATTCAATCAATTCCAAAATCGAATTTGCTAAGTTCTCGGCACCagcaaacacaacaacaacaacatcttaACGCCGCTCAACTATTTCAAGATATACCATTAGAAATGGCGACGGTAATTGCAACTGCTCCCAATTCATCCAATCAGCCAATTGAAATTTCAGCAAATTTGACGAGTTTCGAAAATGAGTTCAATTCCGGAAATGAAATGAgtattggaaatgaatttgttgTGATGCACGATGGTACAGTTCAAGAAGTGATCTCAAATGgtattctcataaattatattaatgcaGGAGATGAGTTAGTCCCTTTGGATAATGGTAACATTATAAACAATCTTATGCAGACTACAGAAGAAGAAGTTATAACGAACACAAATGAGAACTTCGGTATGATAAATGGTCCCATACAATCTGACGTTGCAACAGTTGGCACTGatttagatataaatattgatacgGGTAACTCATCTATGGATATTGATGATATTATTGTTGAAGATAGTGCAGAAACGGTAGGCATTGCAATACCAGAAGtttcatcgaataactctacAACTAATCATAAAGAACCAGAGGCGTCAATTGGCGATATGGTCATCAAACAGATACGTTGTAAATTGTGTAAGTTATTGTTTTCAAATCAGGATGAATTAAAGGAACATATGCTGTCACATAATGAAATTCCGCATTTCTTCTGTGAAActtgtaatttttatacattcttTAAAATCGATTTGAACCAACATTACAAAACCAAGCACGGCACTCAGccgaataataaacaattacaaCCTAGAAATAAAGTGCATTTTAATGTGCCTAAAGGAGTAAAAAGGGTTTTCCTTTGTGAAATGTGCATTTACGATACTCCTGTTAAAGCAATTTTACGCCGTCATTATTTAAGTAAACATCAAGTGGAAGCTACCGAAATGCAATTGCGTCCTGTAAGGATATCATCACTCTCATCTTTAAACAAATCAACACCTACAACTTTGGATGAGGGCGTGATCATATCGAAATATGCATATCATAATACTTCAAATTTAAAGGATGCAGAAGTGGTTAGACCGGATTTTCCGCATGGTGCCAAATGCAAAGattgtaataaaatctttttttggGAAAGTGATCGCATTGAACATTATAAAGGAAAATGTGAAAGAAAACCACGGAAAAAAGTATCAAATACAATAACTAAGAATGTCACGGTTACCACAATTAATAATGGTTCCACAACTGATGATCTCTGTACTTTTCAAGACGACCCAGAACTTGATATTGAGAAATTAATAGCATGTACTGAACTAAAGGCAACAATAGTTCGAGAACCGCCGCCATCATTGCCACCAACACCTCGAACAGCTTTGCCAGCACCAACGCAGCCATCATTACCGATGCCATTGCAACCAACATTGCCATCACCATCACAGTCACCGTCGCGGCCACCATCGCAACCTATACCTTCTGTCATCAATTCAAAAGTGGGCCTTGGCAGTTGTGACATAGTACCGCCGGATGCCATACCGCAAATTGTCGAAACCGACAGCGTTGTCGATAATATACTTGATTTTGATATCAATGGGGACACAATGTtcgaagatgatgatgaaaggAATGGAGATGAAGACTTTCAGGACATGGCACTAACTACCGATGATGAAAAGGAATATGAAGTGGCGAGGGATAAAGATAACAGCGGTAGCTCATATACTGCCTATTGTGTCCAATGTAATCAAGACTTTGTAACTCATTATCAGTTTGAAAATCATATGTTTGTTCACAGAGGACTTGCACCCTATCGTTGCGAATTGTGTACAAATTTGTATAATACAAAAAGGGATCTGATAAGACATTATCTTGCTGTCCATAAAACTGCTCCCACGAGAGATATGATACAAGCAAAAGGTGATAAAGttGCGGTACCCGTAGATAATGTGAGCCTAACACCGGGAAAAATTAGAGATGCCCCTTTGATATGTGCTAAATGTCCGTATGAAACCACCGATTTAACTGAtataaaaatccatttaaatataattcatgGATCTGATGAAGGTATATGA
Protein Sequence
MDDSVDYRLVCRTCLASQTDFYQLDARAFWDDDEKISFLECLKFCTKLEDIPEFPIYICTDCSTALQVAYNFMKNALEAHEILRQKLCSSQPSRINRKYEAMQGVCNKTKSYNIRKALQFDLSIFAILQDRKISFRCKICEERLESKKSLKEHVKLHIDIISYNCEFCSYKTQKRSSLNQHYIDIHNMSATKEQLKPRTKKSDPIEPHRAIEPVEPHIKDLPTSQPEIESHKIINEITIDSVDENQFPYFQTQPLREIQSIPKSNLLSSRHQQTQQQQHLNAAQLFQDIPLEMATVIATAPNSSNQPIEISANLTSFENEFNSGNEMSIGNEFVVMHDGTVQEVISNGILINYINAGDELVPLDNGNIINNLMQTTEEEVITNTNENFGMINGPIQSDVATVGTDLDINIDTGNSSMDIDDIIVEDSAETVGIAIPEVSSNNSTTNHKEPEASIGDMVIKQIRCKLCKLLFSNQDELKEHMLSHNEIPHFFCETCNFYTFFKIDLNQHYKTKHGTQPNNKQLQPRNKVHFNVPKGVKRVFLCEMCIYDTPVKAILRRHYLSKHQVEATEMQLRPVRISSLSSLNKSTPTTLDEGVIISKYAYHNTSNLKDAEVVRPDFPHGAKCKDCNKIFFWESDRIEHYKGKCERKPRKKVSNTITKNVTVTTINNGSTTDDLCTFQDDPELDIEKLIACTELKATIVREPPPSLPPTPRTALPAPTQPSLPMPLQPTLPSPSQSPSRPPSQPIPSVINSKVGLGSCDIVPPDAIPQIVETDSVVDNILDFDINGDTMFEDDDERNGDEDFQDMALTTDDEKEYEVARDKDNSGSSYTAYCVQCNQDFVTHYQFENHMFVHRGLAPYRCELCTNLYNTKRDLIRHYLAVHKTAPTRDMIQAKGDKVAVPVDNVSLTPGKIRDAPLICAKCPYETTDLTDIKIHLNIIHGSDEGI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-