Basic Information

Insect: Physocephala rufipes
Gene Symbol: PRDM1
Assembly: GCA_963966595.1
Location: OZ016503.1:31633595-31638790[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.2e-05 0.0031 18.3 2.5 1 23 980 1002 980 1002 0.99

2 5 9.5e-06 0.00094 19.9 5.1 1 23 1008 1030 1008 1030 0.98

3 5 2e-06 0.0002 22.0 4.3 1 23 1036 1058 1036 1058 0.98

4 5 0.00066 0.065 14.1 2.4 1 23 1064 1086 1064 1086 0.97

5 5 0.00011 0.011 16.5 0.1 1 22 1092 1113 1092 1113 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.2e-05	0.0031	18.3	2.5	1	23	980	1002	980	1002	0.99
2	5	9.5e-06	0.00094	19.9	5.1	1	23	1008	1030	1008	1030	0.98
3	5	2e-06	0.0002	22.0	4.3	1	23	1036	1058	1036	1058	0.98
4	5	0.00066	0.065	14.1	2.4	1	23	1064	1086	1064	1086	0.97
5	5	0.00011	0.011	16.5	0.1	1	22	1092	1113	1092	1113	0.96

Sequence Information

Coding Sequence: ATGAACATCTCTCAAAATCatacaaatgttttaaatatcgCCGccagaacaataacaacaacaactaacgcTAACATcacaaacaataacagcaatagtGGAATCAACAAAAccaatcgcaacaacaacaacagcggcattagcatcagcaacaataaccGCAACACGTGCAACACCATCAACAATCACGCAGCAACATTATTtctaccatcatcatcaccatcatcaccatcatcagcaTCGTTATCGCTGATGGCATCGGCAACCACGTCAGCATCGTCATCAGGCAAAACAATCACCACCACTAAAGTCAATACCGCCACCTCAATGAGTCCTTCACCGCCAATGGCGATGTCGATGCCGACATCAATATCAGCGCCACTGCGCGATACCCCAACACGCAGTCCGACGCCGGATGGCACGCAAGATTACGATGTGACGCGCATGCGTGAGGAAGATTTTGAACGGCTGGCCGTTTATATCGTGCCCGATGTCCAATGCGAGCGAGGGCTACCGAATCGGGCTGATAAGACATTACCCCGAAGTTTAACCCTCAAGCCATCGATGGTATTGTCAACGCCAAATGTAAAGACTGAAGGAGTTTGGAGCACCGGTGTTATACCACGCGGCACTCGTTTTGGTCCATTCGAGGGGGTTCCAACTCCGAATTATCCCAACGATAAAAACACTGCACGATATTTCTGGCGGgtGCAGGGAACACGTCATATAACCTACGGGAATATTAAGATATTCAAGGACGACGACTTCTTCTATCTGGACGGGTCGGATCGTTCACAGTCCAATTGGATGCGTTACGTTGCTTCCGCCTACAGCCTGTCGGTTATGAATTTGGTGGCGTGCCAGCATCAAGAGAACATATTCTTCTACACCACACGTGATATCATGCCCAATGAGGAGCTGATGGTATGGTACTGTAAGGATTTCGCCAAACGATTAGGCTACGATGTAGATCCCGAACGGACTATCTTCGGCGCTTGTAAGGAGGATGTAGATGAAGTGGATGAAATggaggaggaagaagagagTAGCGCGAAAAAGGCTGCCATGTCTTCATCATATTGCATGCCTGCTCCGGATATACCACCCGAAGTGGCCTACAATCACATAACTTACGTTATGGGCCTGCACATTCCTCCGCCCAGTAGCACGCGTCATTCAGTCACACCTAGCCCTTCACCACCGATAACCAGCACAGGTTtactgcagcagcaacaacaacaacaacaatcacattACCAACAGCATTTGGGTACcaaccaacaacaccaacatcatGTTACACCGCAGCAAACAAATCAACGCCATCTGCATCATCAGGCACTGCATCAATCATCTACCCACCAGAGCGTTCTGCAATTGAAACAAGAACCCGCCGAATCACGTGTCCACGTAATTGTGCGCGACCGTTCACCCTCTATGAACAATAAGGAGAAAGATGCTTGTTCACCAGTCTCGCACAAGGACTCACATTACGAGCACCAGTTAACGCCAAACGATGGCTCGGTGAGATCGGTTCGTTCCGATGAGGGTTATCATAGCAATGAGTATCACGAGGATGGCCTAACACCTCCTGAAGACTCGAGTGATAGCGAGAGTGAACACAACTACGTCTTGGATTGCTCAAAGAAAGCCATCGAACCGAAAGAGACAGTTATAATGCATCAAAAGGCAGCGGTTGCGGTAGCAATTGCCGCTGTGTCCTCGATGTCGGCCGTAAGCACCAATTCTAACAGTACGAGTGGTTGCGACAAAAATGAGTACCGAAAATTTAAGGTCAAGATGCCGCTTAAGTACGAATTCAAGAATAGCAAAAGCATAAAGACTGAAATAACTGCAGAGACACACCCACCGCCCTCACCACCTGTGCATGAATCGCCTATGAGTAGTATTAGGCCACCTTCCCCGAGTGGGTTTCAAGAGAACCTTCCGAGTACAACATCCACGGTTTTGGCAGCCTCGTCCACCCTGGATACCGAAGAAACTCTGTCGTTGGATCATGCTCGTGGAGTTTCGGCAGCATCGGGAACGGTTATCGTAATGGAAAATAGAACTTCAAGTCTGCAGACTGATGCTCGCTCGTCGGTTACTCAGTCGAGTAAACCTTTCTACGAGGCCGAATCAACATCGCCGCAGCCACCGCCATCCTCTGTCACGTATGTGCGTTTCACACCGCCCTCCTCGAGTATACTCGAAACGATTTTGACGGGCCAGCATCTCGCTGCAGCTGCAGCACGTCGTCAGGTAAATTCTGCCACTCCGCCACCGAGCTCACCTACGGAAATGGCCTACTCGTATAAAAAGTCGCATCGCTACGGCAATGCTGTTAGTCCAGATTCGAGCTCCAATCTGCCACAGAACCAGGAGCTCGCTGTTACCGCTATACCCGTTGCAGCTCAACGCGATAATGAAATAGTTGTCACCCCTTCTCACATAAACCTCAAAGACAATGGTTCTCCTCCACCACCGATGAACCATCATCCGAATGAGGTGTACACGCCAACGCATGCCACCTTTGGTCCCTTCGTCAATGACGGCCACCAATCACCGCCATACTCGTCCTATTCCAGTTATTCAAACGGCAGCGCTAACATCCACCCACATCATGTGCCAACCTCTACTTACCACTCCCCACCACACAGTACTCACTCACCCTTCGATCGTCAGTCCAGTGCGAGTAGTTCGACACCCAATTTACACCTGCTTCAAAATAGTTCACAAATGCTAAACCACCCGCTCATGCAGCCTCTGGCACCCCTGCAGCGTCTCTCACCACTACGTATATCCCCGCCCTGTAGCCTTAGCCCGGATGGTAACTCGTGCCCACGTAGTGGCAGTCCGTTGAGCCCTAACTCTATGGCGTCACGGGGCTACCGTTCGCTTCCGTACCCTCTTAAAAAGAAGGACGGCAAGATGCATTACGAGTGCAACGTTTGTTGCAAAACCTTCGGTCAGTTGTCCAACCTGAAAGTGCATTTAAGAACACACTCCGGCGAAAGACCATTCAAATGCAACGTGTGCACAAAGAGTTTCACGCAGCTGGCCCACCTTCAGAAGCATCATCTAGTGCACACGGGAGAGAAACCACACCAATGCGATATTTGCAAGAAACGCTTCTCCTCCACGTCTAATCTGAAGACACACCTGCGACTGCACAGTGGCCAGAAACCGTATGCTTGCGATTTATGCCCGCAGAAGTTTACGCAATTCGTCCATTTGAAACTGCACAAGCGGCTGCACACAAACGATCGACCGTACGTTTGTCAAGGTTGCGACAAGAAGTACATAAGCGCTTCCGGACTGCGCACACATTGGAAGACCACAAGTTGCAAACCAAATAATCTGGAAGAAGAGCTCGCTATGGCCGCGGCAGCCACTTCAGAATGTTTAGATAAAGACCTTCCCGAACCCGATTCACGCGAAGCGTATGAACAAATGCAACAACTACACACTCAGACCACGCACCCACATCTGCGACATATCGGTGGCCATCATTCGCCACCGCGGCTGATCGCGTTGCACACACAAACCTTGTCGCCAACGTTGCATTTACAGGAGCCGCAGCAGCAATCTCTATTACAACAAACtccgcaacagcagcaacatttgCCACCTGCAGCAATATTGTTAACAACTAACAGTcaattgcaaaaacaacaacatccgcATCAACCACAATCAAtacatcagcatcatcaccatcatcatcaacaacatcatcaaacTCACCACCATTTGCAACAGCAGCCGCAGccacagcaacagcaacctcaatcacaacaacaatcacagcaacagcaactcTTGCAAAATCCTTTGCAAACACTCAAAATAGCAAAACACCAACACCAcccacaacaacagcagcaacaacaacatcaacagctgcaacaacaacagttgcATATCGTACAGCCTACTGCGAATGTTAACGAACAGTACGTGAACGTCTCTCATGCGCatgctgcagcagcagcggccCATGCTGCTgccgcagcagcagctgctcATGCAGCAGCCGCCGCTCACCAACACGCGCACGCTCAGTCCCAAGAGAGTCGCCCGTCAGTGATAGAATCCAGTCAACCGATGATAATTGAGTGTACGTAG
Protein Sequence: MNISQNHTNVLNIAARTITTTTNANITNNNSNSGINKTNRNNNNSGISISNNNRNTCNTINNHAATLFLPSSSPSSPSSASLSLMASATTSASSSGKTITTTKVNTATSMSPSPPMAMSMPTSISAPLRDTPTRSPTPDGTQDYDVTRMREEDFERLAVYIVPDVQCERGLPNRADKTLPRSLTLKPSMVLSTPNVKTEGVWSTGVIPRGTRFGPFEGVPTPNYPNDKNTARYFWRVQGTRHITYGNIKIFKDDDFFYLDGSDRSQSNWMRYVASAYSLSVMNLVACQHQENIFFYTTRDIMPNEELMVWYCKDFAKRLGYDVDPERTIFGACKEDVDEVDEMEEEEESSAKKAAMSSSYCMPAPDIPPEVAYNHITYVMGLHIPPPSSTRHSVTPSPSPPITSTGLLQQQQQQQQSHYQQHLGTNQQHQHHVTPQQTNQRHLHHQALHQSSTHQSVLQLKQEPAESRVHVIVRDRSPSMNNKEKDACSPVSHKDSHYEHQLTPNDGSVRSVRSDEGYHSNEYHEDGLTPPEDSSDSESEHNYVLDCSKKAIEPKETVIMHQKAAVAVAIAAVSSMSAVSTNSNSTSGCDKNEYRKFKVKMPLKYEFKNSKSIKTEITAETHPPPSPPVHESPMSSIRPPSPSGFQENLPSTTSTVLAASSTLDTEETLSLDHARGVSAASGTVIVMENRTSSLQTDARSSVTQSSKPFYEAESTSPQPPPSSVTYVRFTPPSSSILETILTGQHLAAAAARRQVNSATPPPSSPTEMAYSYKKSHRYGNAVSPDSSSNLPQNQELAVTAIPVAAQRDNEIVVTPSHINLKDNGSPPPPMNHHPNEVYTPTHATFGPFVNDGHQSPPYSSYSSYSNGSANIHPHHVPTSTYHSPPHSTHSPFDRQSSASSSTPNLHLLQNSSQMLNHPLMQPLAPLQRLSPLRISPPCSLSPDGNSCPRSGSPLSPNSMASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDLPEPDSREAYEQMQQLHTQTTHPHLRHIGGHHSPPRLIALHTQTLSPTLHLQEPQQQSLLQQTPQQQQHLPPAAILLTTNSQLQKQQHPHQPQSIHQHHHHHHQQHHQTHHHLQQQPQPQQQQPQSQQQSQQQQLLQNPLQTLKIAKHQHHPQQQQQQQHQQLQQQQLHIVQPTANVNEQYVNVSHAHAAAAAAHAAAAAAAAHAAAAAHQHAHAQSQESRPSVIESSQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00366754;
90% Identity: -
80% Identity: -