Basic Information

Insect: Physocephala rufipes
Gene Symbol: L
Assembly: GCA_963966595.1
Location: OZ016505.1:26822122-26832556[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 6e-06 0.00059 20.5 1.7 1 23 288 310 288 310 0.98

2 19 0.5 49 5.1 5.8 1 23 316 338 316 338 0.98

3 19 2.6e-07 2.6e-05 24.8 3.1 1 23 344 366 344 366 0.99

4 19 1.2e-05 0.0012 19.6 0.3 1 23 372 394 372 394 0.98

5 19 8.6 8.5e+02 1.2 3.9 2 23 462 485 461 485 0.84

6 19 0.0037 0.36 11.8 0.3 2 23 512 534 511 534 0.96

7 19 0.17 17 6.5 0.4 1 23 639 661 639 661 0.96

8 19 0.0082 0.81 10.7 1.7 3 23 670 690 670 690 0.98

9 19 0.088 8.7 7.4 0.6 1 23 698 723 698 723 0.92

10 19 0.11 11 7.1 0.2 1 19 728 746 728 748 0.94

11 19 0.39 38 5.4 0.3 2 23 759 781 758 781 0.95

12 19 0.0033 0.32 11.9 2.7 1 23 829 851 829 852 0.96

13 19 9.6 9.4e+02 1.0 0.6 1 23 1051 1075 1051 1075 0.84

14 19 0.0056 0.55 11.2 4.7 2 23 1084 1106 1083 1106 0.96

15 19 0.046 4.5 8.3 0.1 1 23 1112 1134 1112 1134 0.92

16 19 4.5 4.4e+02 2.1 0.5 2 20 1142 1160 1142 1163 0.93

17 19 0.15 15 6.7 0.5 1 23 1255 1277 1255 1277 0.94

18 19 0.022 2.1 9.4 0.0 1 23 1287 1309 1287 1309 0.96

19 19 0.011 1 10.3 1.5 1 23 1316 1338 1316 1338 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	6e-06	0.00059	20.5	1.7	1	23	288	310	288	310	0.98
2	19	0.5	49	5.1	5.8	1	23	316	338	316	338	0.98
3	19	2.6e-07	2.6e-05	24.8	3.1	1	23	344	366	344	366	0.99
4	19	1.2e-05	0.0012	19.6	0.3	1	23	372	394	372	394	0.98
5	19	8.6	8.5e+02	1.2	3.9	2	23	462	485	461	485	0.84
6	19	0.0037	0.36	11.8	0.3	2	23	512	534	511	534	0.96
7	19	0.17	17	6.5	0.4	1	23	639	661	639	661	0.96
8	19	0.0082	0.81	10.7	1.7	3	23	670	690	670	690	0.98
9	19	0.088	8.7	7.4	0.6	1	23	698	723	698	723	0.92
10	19	0.11	11	7.1	0.2	1	19	728	746	728	748	0.94
11	19	0.39	38	5.4	0.3	2	23	759	781	758	781	0.95
12	19	0.0033	0.32	11.9	2.7	1	23	829	851	829	852	0.96
13	19	9.6	9.4e+02	1.0	0.6	1	23	1051	1075	1051	1075	0.84
14	19	0.0056	0.55	11.2	4.7	2	23	1084	1106	1083	1106	0.96
15	19	0.046	4.5	8.3	0.1	1	23	1112	1134	1112	1134	0.92
16	19	4.5	4.4e+02	2.1	0.5	2	20	1142	1160	1142	1163	0.93
17	19	0.15	15	6.7	0.5	1	23	1255	1277	1255	1277	0.94
18	19	0.022	2.1	9.4	0.0	1	23	1287	1309	1287	1309	0.96
19	19	0.011	1	10.3	1.5	1	23	1316	1338	1316	1338	0.95

Sequence Information

Coding Sequence: ATGATGGCTATGAAAATGCTTTACCGTGGGCCGAGTTCTCGCTTAGAGAatctaattgaaaaaatacaagCGACGAAAGAAGTTGTGAATTCGGATATTTATTCCACACACACTTCTTCGAGTTATTCGCCTTCAGTTTCGGACGGCACCATGACGCCCAATTCCTTAcatatgcaacaacaacaacaacaacatcctcatcatcaacatcttCAAGCTCATCAGCTACAACATCATCAacgtcaccatcatcatcctTCGCACTTGTTAGCGCATCACCAGCAAACTTTATTAACGCCCGACGATGAAACGCTCGAGCGGAGAAACGTCTCACGACGTCAACGTGCCGACGCGAACACAATTAACGCTAAAAGTGTTAGTGATGTCATTTCAAcgaatggtgatgatgatgacgatgatggcgGAGCAACGACGAACAATATCGTTGGAGAAAATATCAACGACATCAACACTAATGACACTGAGTCGATTCACAAAAAATCGAATGACGTCATTTTGAATGGAGTCAACACCTCAGACCCAATGGAAGCAACACCTTATcatcagcaccaacaacaacaacaacagcaccatcAAAAACATCAACACCAGCAtccgcaacagcagcaccagcaacagcaacaacaacaacaacagttgcAGCAACACCGCGCCCGTTTGGGACGTTTACCTCGAGGAAGTGTGACGCTAATGGAATCTGGCGCCCTGAAGCTACCGACGAAACAATTgcgtaaaattgaaaaagatgcAGCAAAGTTTGCGGCGAATAAGTTGACAGGTGACAGCGGTATTAAAAGTGGCGGCGCTAGCGGCGGCGGAACAACGCAAACCGACGGATCCTATCAGTGTCAATTCTGTGATAAATCCTTTCCGCGTCTCGGTTATTTGAAGAAACATGAACAGAGTCATGCCGAACACCTTCCCTTTAAATGCGACTATTGCGCCCGCCTCTTTAAGCACAAGAGATCACGTGATCGTCATACAAAACTGCATACCGGCGACCGACGTTATAGATGTCCGCATTGTGAGGCAGCCTTTTCGAGAAGCGATCATTTAAAGATTCACATGAAGACGCACGACAATCAGAAGCCTTTCCAGTGCACCATCTGTAATCGTGGCTATAACACTGCTGCCGCTCTAACTTCACACATgcaaaatcacaaaaagcaAGCCGCCATTCTTGCGGCCGGTGGTAACCCGCAAGCACTTAATTACAGTCCCCGATCGACCGGCTCGGCTTCAAGCAATGGCAGTCTGCACAAACGTCGTTACGCCATGACTAATGCTGCGTCAGTGGCTGCGTCGGATAGTAGTCCGAACCGCTTGGACTATCCAAAACGTTTACGTACTCATCTGAATCTACATTGCACCTATTGCACTAAATGCGACTTCAATTCTCTGGAGCAGCTCAATACTCACGTTCAGGCCATGCATGAAAAGGAACTCGTGACCTCGGCAACACCTACACGACGCCCAGGTACGATCGCGGAACCGTTGTCACTTTTTCAACTCTCCTGCGAGTATTGCACCATGAAGTTTCCTAGCATCCCGGCGATGTTCCAACACATGCGAACAACGCATGTCGACCGCCTGACCAGTCCGAATTCTTATTTTGAACATTTCAATAGATTAGCTGCAACGGGTACTTTTAGCCCCCGCTTGCCCAATAAGAGTGCGCTGAAGGATAGCGTGGACGCAGCAACGTCTGAAAAGCATAATATTAAGGTCGAGTCACAAACATTGAGtcccaaaaatattgttagtCAGGATGAGCAGCCAAAACAGGAGGAACCAACTGATTTAAGTCAGAACAAACGGCGTTCCAAGACACCCGTTACGCCTCCTCAGCGCGAAGATCACAATTCTCCCCAAACTCCCGAAAAGCCGGACATGTTTTTCTGCAATCAATGTAATGCAGGTCTACCAGACTTTGAGAGCTTCCGTAATCACTTGAAGGCGCATTTGACACAAGGCACGAACCTCGGATGCCATCATTGCGGGCTAGCTTTACGGGACTCGACTGAATACGAACGTCATGTCATCTCACATTTTCTAATCAGCAATTCCGAATTCAACTGCTCCGATAACGACTGCAAGGCATCCTACGGCAAACCGGAAGAGCTACACAAACATTTACTAGAGAATCATGTGGTAACGTTATACAAATGCTCGCTCTGTTCCGAATTCTTCGAGACGAAAGTCGCTATTCAGGTACATTTTGCTTGCGCTCATTCGTCGGAGACGAAGATTTTACGGTGCTCCGCTTGCATGGAAGTATTTCGTACGGAGCAGGATTTTGACGTGCACGTAAGGACGCGACACGAAGCTACACGAAATGGCCCCTCTACGTCATCTTCTTCATCCGCTCAGAATAACTCAACGTCGCTGCAATGCATGTTTTGCCGAACAATCTGTTCGTCGGATCTCGAAATGCATTTTCATTTAGCCGCCCACGCACGTCAATTCCGTTGCCCATCCTGCCCGGAAACCTTTCATGTCGAATTCCTGCTAGACCGTCACATGCAGAGTCATCATTCGGGCAATGAAACCAATCCATTGTTGGCGCctgccaacaaaaacaattacaaggAACAATCGGCCGTTAATAATCATCAGTTGAGTCCCATGAATTCCATTTACGTTAATGCTCTCTTCGGCAAATCTGCTCTGATGCCACTGGCAGCACAAAGCGCCAACAGTACCATCCTCGACTACAATGCAGCCTTCGCAGCTCATTTTAATAAAGGTTTGTTCCCTGCGGCAAACGCCAATACGAGCAAGTTCTACAGTCCCCTTCAGGTGGATACTGGCGGTATGAAACATCCGGCTCTAATGTACGGTCTCGGGCAACGTTACTTCGATACAAATCGATCACTTATCGATATGTACGCGCAGCATCAGCACGATAAGCAAACATTTCCGAATACCaacaatttcttcttaaatCCCAAACCCCTAACACAAACCTCTcagcaccaccaacaacaacaccaacaccaacaaggccaacaacaacaccaacaccaacaacaacagcaaccacaACCGCATCAGCATCACCACCCGCATAAGGATCCAATCACTTCCACTCCACGAAAAACTCCAAACGATTCCGCGGGGACGGCCGGTTTCAGTTGTGGCATTTGTGAGCGCAATGATTTTCGCACGGAAGCCGAAGTACATTCGCATCGTAAAATCGTTCACAACATGAAGACCGGTGTCAGTTTGCGTTGTGCCTATTGTTCGGGCAATTTTAAATCACGCAACGAATTGGAACATCACATGAAAACATGTCACAATTCGACGGGCAAACATAAGTGTCTAATCTGCGATGAAGTATTTCCCTCACCCGCGATTCTGGCAGAGCATAAACTTCAGCACTCCAAAGTTGGTCAATCGGGGAAATGTTCGCACTGTGCGAAACCTCTGCAAGACGTATCGGCATTCAAGGATCATTTACCGGAACACAATGCGGAAGCTCAAATGCCGGTTCAGTGTATTTGTTGTCGACAGTCTCTTCACTCGGATTTCGAGATCGCACTGCATGCAAAATTCCACACAAAATCCTCCAATGAACCGGAAGCTTCTTGCGCTCTCTGTCTCCAAACAATTCCCAATGCTCCaagtgaaacaaaaatttgtgataaaTGTTGTCGCAAACACAAtctaaacaacaaattcaacaaaCGCGAAAATTACACGGAACGCACTACCGAAGACCCGATGCGGCATCACCTCGAACATCGTTGTAACCTCTGTAAAATCGTATTACCCCAACTCCAGAAACTTCGAGAACATTTAGTCGAGCATACATTCGCCGGATGCGAGGATCGAGGCTATATTTGTTATATCTGCTCAGCAGTTTTCACCGCTTCCCCGGGACTTCTCAATCATATGACAGAGCATGGCCTAAATGCTCGTCCATACGATTGCAATCAATGCAATGAGAAATTTTACTTTCGCGCAGAACTCGATCATCATTTAATCGATCATCAACGAGTCGTCCATGAAGTTCCGTGCAATTTGAAAGGACGAGAAGAGCGAATCTTTCAAGCGGCTGAGGAGCGAACGAGAACGAACGAGccgaatgaagaaaataaaccaAATGAGGAGCAGATTAGCGATAATCAacaaacaacgacaacgatgACGGCACAGGTAAAGAAGGAAATTTTGGAGGAGCGAGGTAGTGGATCGGGTGTAGTTGGTGAGGAAGATGATGAGTATATAGAAGTGGAAAAAGTTGCAGGCTCTGAGCTTGccggaacaacaacaacaacaacaaatacgaaTAGGGCTGAAGCGGCAGACAATGGAAATGGCAAAAGAGATGAAGtggaagagaaaattaaatatgcgAATGAGAGAAAATGA
Protein Sequence: MMAMKMLYRGPSSRLENLIEKIQATKEVVNSDIYSTHTSSSYSPSVSDGTMTPNSLHMQQQQQQHPHHQHLQAHQLQHHQRHHHHPSHLLAHHQQTLLTPDDETLERRNVSRRQRADANTINAKSVSDVISTNGDDDDDDGGATTNNIVGENINDINTNDTESIHKKSNDVILNGVNTSDPMEATPYHQHQQQQQQHHQKHQHQHPQQQHQQQQQQQQQLQQHRARLGRLPRGSVTLMESGALKLPTKQLRKIEKDAAKFAANKLTGDSGIKSGGASGGGTTQTDGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAAILAAGGNPQALNYSPRSTGSASSNGSLHKRRYAMTNAASVAASDSSPNRLDYPKRLRTHLNLHCTYCTKCDFNSLEQLNTHVQAMHEKELVTSATPTRRPGTIAEPLSLFQLSCEYCTMKFPSIPAMFQHMRTTHVDRLTSPNSYFEHFNRLAATGTFSPRLPNKSALKDSVDAATSEKHNIKVESQTLSPKNIVSQDEQPKQEEPTDLSQNKRRSKTPVTPPQREDHNSPQTPEKPDMFFCNQCNAGLPDFESFRNHLKAHLTQGTNLGCHHCGLALRDSTEYERHVISHFLISNSEFNCSDNDCKASYGKPEELHKHLLENHVVTLYKCSLCSEFFETKVAIQVHFACAHSSETKILRCSACMEVFRTEQDFDVHVRTRHEATRNGPSTSSSSSAQNNSTSLQCMFCRTICSSDLEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSHHSGNETNPLLAPANKNNYKEQSAVNNHQLSPMNSIYVNALFGKSALMPLAAQSANSTILDYNAAFAAHFNKGLFPAANANTSKFYSPLQVDTGGMKHPALMYGLGQRYFDTNRSLIDMYAQHQHDKQTFPNTNNFFLNPKPLTQTSQHHQQQHQHQQGQQQHQHQQQQQPQPHQHHHPHKDPITSTPRKTPNDSAGTAGFSCGICERNDFRTEAEVHSHRKIVHNMKTGVSLRCAYCSGNFKSRNELEHHMKTCHNSTGKHKCLICDEVFPSPAILAEHKLQHSKVGQSGKCSHCAKPLQDVSAFKDHLPEHNAEAQMPVQCICCRQSLHSDFEIALHAKFHTKSSNEPEASCALCLQTIPNAPSETKICDKCCRKHNLNNKFNKRENYTERTTEDPMRHHLEHRCNLCKIVLPQLQKLREHLVEHTFAGCEDRGYICYICSAVFTASPGLLNHMTEHGLNARPYDCNQCNEKFYFRAELDHHLIDHQRVVHEVPCNLKGREERIFQAAEERTRTNEPNEENKPNEEQISDNQQTTTTMTAQVKKEILEERGSGSGVVGEEDDEYIEVEKVAGSELAGTTTTTTNTNRAEAADNGNGKRDEVEEKIKYANERK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -