Pruf002305.1
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- Sry-delta
- Assembly
- GCA_963966595.1
- Location
- OZ016501.1:5321181-5322461[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0017 0.17 12.8 1.1 2 23 160 182 159 182 0.94 2 8 0.11 11 7.1 1.1 1 23 185 207 185 207 0.97 3 8 0.00017 0.017 16.0 1.6 2 23 214 235 213 235 0.97 4 8 0.0011 0.1 13.5 3.4 1 23 241 263 241 263 0.96 5 8 6.3e-06 0.00062 20.5 3.6 2 23 271 292 270 292 0.97 6 8 9.2e-06 0.00091 20.0 4.6 1 23 299 321 299 321 0.98 7 8 0.00033 0.033 15.1 0.5 1 23 351 374 351 374 0.92 8 8 0.00034 0.034 15.0 0.5 2 17 399 414 398 421 0.85
Sequence Information
- Coding Sequence
- ATGGAGgattattgcaataaaattcgtTGCTTTCTATGCAGTCGAAAAAGCTCTAGTGaaaaacacacaaatattgtaaaatctAAGTGTCCGGTTTCTGGCAAGACTCTAAAAGATGTTTTGAATTACCTAGCACGCTGCTCAAAAATTGGTCTTTACATATCAAAGGCCGACtccgtttgtttttattgtcatgGTCAACTTCTTGAATATGATGCCATTATGATGAAGTTGCTAAAAACCCAACAGAGTCTAATGAAGTTAGTCGAAAACGCTGGCATGGGCTATGATTCTGATGCAGAAAAGGAATGCAACGATCATATGTTGACAATGGAGGAATTGAATAATGCCGACTTCTTCAATGATCTTTATGTTTCGGACAGTGAAGTTTTTCAAACAGTAAGCAAAGTTGCGCATGGCCCAAACAAGTTTATGCAAAATACTATCatcgaaaaaaggaaaagaaaggaGGCTATGGAATGCCAGTTCTGTGTAATGAAATTTCGTAGTAGAgctaaattacaaaaacacatTGGCCGGACCCATCGCAAATACCCATGTAAACTGTGCGATTTTAGCCATCGAAATGaagattatgttttattacatATGAATCTTCATGAAGGTCGTTTGGAAACTCAGTGTCGCTTCTGCGATAAAAACTTTACAACGAAAATAAGCACGATTCGTCATATGGAAGTCCATAtggattcaaaaaaatatcaatgcGACAAATGTGGGCTATGCTTCTCACAAACTACTGTATTATATAATCACAAGCTTCAACACGAAGCCGAAGAGGATCCACTACGTTGTGAAATATGCAATCAGGTGTTCAAAACTAAACGAACCTATCGTCATCATATGATAACACACCGATCTGATCGCCCTCGATACAATTGCGAGCATTGTTCGAAAACGTTTACGGAGAAATACACGCTAAAAGTGCATAAGCGCATACATTCCGAGATGTCTAACGAAATTTCGAAGGAAATTACAAATGCGATACCATCGCTTCCTCAGTCGAACCCACCGCAATTGGAAGcgaaatttaattgtattatttgtGATCATGTATTCCCCGGTAAAGAAAGTTTAAATCGACATATGGAAAAGGAACATGATGTTATAACCAAATCTCTTACGGTTTCAAATTATTCTCAGTATGATATCATCACAAACGAACCACGGAAACCGTGCCATGTTTGTGGCCAGATGTTTAGTACACAAAGTAATTTAGATTTTCATTTAGGAAATGTTCACGGCTTAGATTTTAAGTAA
- Protein Sequence
- MEDYCNKIRCFLCSRKSSSEKHTNIVKSKCPVSGKTLKDVLNYLARCSKIGLYISKADSVCFYCHGQLLEYDAIMMKLLKTQQSLMKLVENAGMGYDSDAEKECNDHMLTMEELNNADFFNDLYVSDSEVFQTVSKVAHGPNKFMQNTIIEKRKRKEAMECQFCVMKFRSRAKLQKHIGRTHRKYPCKLCDFSHRNEDYVLLHMNLHEGRLETQCRFCDKNFTTKISTIRHMEVHMDSKKYQCDKCGLCFSQTTVLYNHKLQHEAEEDPLRCEICNQVFKTKRTYRHHMITHRSDRPRYNCEHCSKTFTEKYTLKVHKRIHSEMSNEISKEITNAIPSLPQSNPPQLEAKFNCIICDHVFPGKESLNRHMEKEHDVITKSLTVSNYSQYDIITNEPRKPCHVCGQMFSTQSNLDFHLGNVHGLDFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00366756;
- 90% Identity
- -
- 80% Identity
- -