Pruf003630.1
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- -
- Assembly
- GCA_963966595.1
- Location
- OZ016501.1:22658829-22667726[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.62 61 4.8 1.0 1 23 1748 1770 1748 1770 0.95 2 12 0.00039 0.039 14.8 3.5 2 23 1773 1794 1773 1794 0.97 3 12 1e-05 0.001 19.8 0.2 3 23 1802 1822 1800 1822 0.98 4 12 1.3e-05 0.0013 19.5 4.8 2 23 1829 1850 1828 1850 0.97 5 12 5.7 5.6e+02 1.7 0.4 5 23 1863 1881 1861 1881 0.96 6 12 6.1 6e+02 1.6 6.2 3 23 1888 1909 1886 1909 0.90 7 12 0.037 3.6 8.6 0.1 2 23 1920 1940 1919 1940 0.95 8 12 7.1e-05 0.007 17.2 1.0 1 19 1946 1964 1946 1968 0.95 9 12 1.2e-05 0.0012 19.6 0.9 1 23 1976 1998 1976 1998 0.98 10 12 0.00016 0.016 16.1 7.4 1 23 2004 2026 2004 2027 0.96 11 12 0.001 0.098 13.6 6.5 1 23 2032 2054 2032 2054 0.98 12 12 0.0018 0.17 12.8 6.0 1 23 2060 2082 2060 2083 0.96
Sequence Information
- Coding Sequence
- ATGGTGGAGAAAGTGCAGTGCCCTGTGTGCACATTGTTTCTGCACGCGGGTATGAATTTATCCGATCACTTGGAAACACATCCTAAAGAGCAAGTAATTAAAGCACTTGTGCAGATGACACTTCCTCGTTTAGAAACTAAAGAGCTGCCATGCTATAAAGAATCCGATCCCAAAGTAGAAGAAGATAAAATCGATACGGAACCGAAGATATCGAAGAATGCTtacaaattggaaaattattcGGATTTATGCATTAATTCGAATACTAATTCCATACCTTCAATATCCTTTTCATCATCAAATCTTCCGCGATCCTCGAGTTTGTCCAATGAggggcagcagcaacaatctACAGAAAAACCAGCACCAGCTATGATTTCTAACGATTTTACTAATGTTCCCTTGACATCAAAACATACGACTCTTAATTCTCAGaatatcactttatcacctgCGTATATTGGACCAATTGCTTCGACCGATAATGCTGTGACCGACGTTAAAACTAGTTCAACTGCTATCAACGAGCTTCCTCAACCATCCACTGATTTTAGCAGTTATACAAATCGATCCAGTCAGCATTATCAGCAATCAATGTCTGCATCTACTAAGCATCAACAACTCAATACGCGAGTGAAAGACTCACTTAATCCGGTCGAGTTGGTGGGGCAACAAATTGGAGAGCTGAACAATTCTTCAGCAAatctaaataatttccattctCCTAAACAGCAGCACCGCCAGCAATTGCAGTTACCTCCATCACTTCAAGTCCATCAATCACAGCATGTAAATGCATTGCCAAATTCTTTATCTTTGCCACAGCAACAAAATCTGAAAGTTATTTATTCACCTGCTTTACCATTGTCATCATCACAACTGCAGGCACAAGTTTTCAATTATCAATTTCCGGCCCAACAATCCCGCCAGAAACCACCTCCCGCATACGGCACGGCCATTAGTCAAATACGATCTCAAcacaatcaaattaaaaaaggtagCCAGCAGAtccaacaaccacaacaacaacaacaaccgcaccAACAACacctgcagcagcagcagcaacttcAGCACCATGTGCATCGAAACGCAGATGcatcaatttcaaaacaacTCTATGCAAAGAAAAACCCATTATCCAACGGTGTATTTCCAATAAAAGTCACTCAAAATAAGCAGCATCAGCCACCTCAGCAACAATGTGAGGTTGCacatcagcatcagcagcaattTGCCAAAAATGTTATTTCGAATTCAGCTCCTACGTCTTCACAACGAAAGTTTGGTACATATCAAACATGTAGTGATCAGTCGTCAGCGCCAACGCCAGCCAATGTATCATCCTCGACTGAAATGCTAACATTGTCCAGCGCTGTACCGCCACCTCCGCCCCTACCATCGCACACGTCGCTTCATTCGACTCGACACGCGTACTCACCCTATCCCTCTTCACTAAGTATTTCGTCTTCCTCATGCTCTTCTGTTCTACGCTACGCTGAGTCACCAGTTACCGCTCATTACCTGGAACGGGACAATGGCGATTTCATTGTTCAAGAGACACCAAAGCGTATTGTTGAATGCGTGGAGAAAGATAACGGTGAGTTTTCGGTTATCGAGCGGATCTATCAATCGCCTCCAAGCGTCTTACGCATTCACGACGAGGATGAGGATAACGCAGAGCTAGAAGTTGTTGGAGATACGAATGTAAAAGAATCCTCCAAGGACAAGAAAAACCAGCTTGAGACCAGTAAGGAAAACGACAGCGATAAATTATCGCAAGCAACGGAAGAAGAACTAATGAGGGTCGACGATAGAAGCGAAGCGGAGAAATCAATCTGTGGCAGGGCATTAAGTAGTgaagataaagaaagaaataacaacataCATATGGGTGGATGCTCAGAGAAGCCAACAACAAgtgctgcagcagcagcagcgtcGGCAGCAGCAAACGGAAGTAATCCTCAAAGTCGGAGAAAGTCCCCAAAGAACACTATAACGGTTTTAAGCGATGTACAATTAAATCTTAATGAATACCTCGACCTGGTGGGTAACATTATAGCATCGAGCAAAATACCCAAAAGTCAAACTTTGGGTGTAACCGCACCTATACCGTTAGTTAAAGTGGAAAAGGTTGAACCTATGGATGAGTATGAAGAGTTCGAACAATGTCAGGACACGAAACGAAATGAGAAACCTCGAAGCATGAAGGTCGCGGTGGAGAGTATTAACGACAGTGTAAGCACGGCAGCAAAGGCAATCACAGGAAGTCCCTGTACACCAGAACCACCAAATTTCACCACCtacaaaagcaaagaaaatacTTCTGAGACTGATGAAAtagttgaaaataattttagaaataagaCAAAACTAGAAGAGGGTACATCTTCAGTAAGTAGAGCAAGTGATGGAACTGTTAATGAGAAGCTGGGCAAACAGAACGCAAATTCTTGTTCCGGCCATGCTACAACGAGCGTTATACGCATGGCAACAACTACAGCTagtcaacaatatttaatgGAGAGAATGGAAGAGGAGCATTTGGGCAAGAGTGGGAAAGAGGCCTCCGCGAGAAATGAAGAAACGGAGAGCGTGGATGTAATTAATGCTTCCGATCGGTTGAAGCAAGTATCGCTCAATAATAGCTCAAGTATTGCCGAAGATCTATCCCCATTCACTCAAATCAAATCCGAGGCGCTTTCAACTGAAGCTGCACGAGTGCCATCATTACCACCGCCTCAGAAAAAAGGGCCAAAGAAACTTGTTATAAAGCCAAAATCTAGCAcagttgaaaataaaactactTCGAGAatgaactccaatcaatacAGTGAAGAGCAGCCAACCTCACTGTCAAGAGTGAAAATGCTGGAATCCGAACGAGATCACATGACCAAACATAGTTTTCCATCAAAGAATGTTATCAAAAGTGAGCCCAATACTTCAAGCGAGGTTACAAACACTCAAGAAATATCCATTAATTCGTTTGAGCTTAAACAGGAGAAGTCGTCATCGCGCGAGGAGTCGAGTATTGATTTCGAGCACGACGGTATTCGTCtggatattaaaaatgaacgaGAAGagctaaacaacaacaataataacaataacaaaagtaatgTTTCAAAGATAAACATTGAAACTGCCGAAGATCAACTTGCGCGTTCCACTCCTTTACGTCTGGATGAGAATACGCACGGTTTACTTGATTTTCCAAGTTCGAGTAAAACGGGAATATTAGGAACAACCGCTACCACAAACGCTCATACATTTCCTTCGGCCAATTCAATATTTGGTGTGGCATCGTCTGATAAATCTGCACTCATTAATTCCAATTCCAATTCAAAACTGTCGCCGTCGTTAATTGCGACCACTTCAACTACATCCAGGAACGCTTTAGCTACTTTGCGATGTGAAGACGAATTTATTATTCCCGATGCAACTGACGCTGTGGAAGAAATTGTCATATCGTCGTGTTACTCCTCTCAATCAGCTTCAGACGTGGCGCTAAATAATTTCGGAGATACACAGAACCATCAGcaccatcagcaacagcaacaaaatttcACTGATTATCCATTCAGCTTTCTGTACGGCGGCAGTAGTTTAGCTAACGAAATCGCCAATAAGAGCAATTTTGCTCAAATTTATCAACAACAGCCACACGATATTACGACAGCTGCCACTCTTGCATCGGGAAGTAATTCGACAATAGAAGAATACAGTTCTGATCCTGGTCGGGGTGATAAAACGCTTAGTGCTTACAATCATCATGATGATGCACCATCAGCACCCAGGCTATGGTACCAGTCGGTTTCTACATCAAACGCTGAATTCGAGGCTTCTTTGGCAGTGGATTGCGGTGCTGCCGTAAGCGGTGATACAGGTGCTGATGATGCTGGTAGTTATTTAGATTTGGATTCCTACAAACGCGTCAATATGATTGGTGGATGTGAGGCGCAGACAATGGTTGCGCcatcttcatcattatcatctttTACAGCGGCCACAGAAAGCAGTTTGGCTGGCTGTACCACGGATGCTCTAAATATACGGACGGACGAAAAGATGCCAGCGAAGGGTGAGATTTCGGAGCAAGAAAGCAATTGTGATATTGATAATTCTTGGAGTCAGTCTatttatggCGATATACCAGTGCGTTTCTTTAAATCGTCATTCCCGGGTTTAATGCCAGGAGAAAACTGCTGGAATAATGAGGAATATTTTACCGTGCAGGATTTGAGTGCTTCGGCCGGAACAACGAATATTAGCAACAGAGCAACAAAGAGCTTTGATTTTCGCCTTCCATCGCAAGACGCTGCAGCATCTTCACCATTGTCAGCCGCAGCGACATCAACAGGGACTACCACTGGTTGTAGTTCACCGCAGCATCAATCTGATAACCTACCATCCACGTCatcaaaaaagaagagaaaacgtGAATTAAATGAGCCAAAGAACACTCCTACAGCAGGCACGACTGTGATGGCATCTACATCAACAGGTCAAACAAACGCTACTGCTACGGTGACGTCACAAGATCTGCTTTTGCAACGTGAAAAAGACCATTTGCAACAGCACCAGCGGCAACTGCAACAAATATATCAAGATGTGCCTACAACATCTGCAGCCATGCAGGCCAACCTGACAACTGTCGATGCTACTCCACCCAACTCAGCACAAGATGCAGCTCTAAACACTAAATCAGCTAATGGTCAAAGCCGAAGTGGGAGAGTATTCTCTTGCATTCATTGCATAGCCAAATTTTCCAGGCTCCGAGATCGCAACCTGCACATGATAGCGTTACATAATTACGTTTTACGTAATTACCGACTCGTTCCCGTGCAGAAAGTAATGGCAGTTTCAGCAACGGCAATGGCGAGAGTTACGACAGGAGGTCAAAAGAATCAGGAAATAGAAAGGGATTCCAAACAAGATATTGTGAAACTCGAAGTAGAATTAACCGAGCAGATTGCTGTAAATAAGCATAGCGAATCCATGAATACTGTTGGTGAATTGATGACGAAATCAGAACTTGACGAAAAAGATGGTTTATCGGATTTGGCCGCTGAGGATATATCTGCTGTTGGCGAAAATTCCACCGATCCAGTATTCCTACCTTCTTTAACTAGGCTGTACAACTTGTATCATATGCTGATATCATTTAATATCGCTGCCTTGAAGCAGAATCAAACTCTCTCCGAAGCAGACGAGAAACTCATGCTCTcctcaattttcttttgcttcatTTGCCGTCAGAAGTTTGGAACGGTTAAATTGTATGATGCACACATGACCGAGCACCCGGCAGAGTGTTACACGTGCGGTAAAAAGTTCCACCGCTGGCAGAACTTGTCCTTGCATTTAAAACGTCATCTTGGCTGGAAGGAGTTCGGTTGCAATATTTGCGATAAGAAATTTGTTGTGCGCAGTGCTCTCGTGGAACACATGCGTATGCATACAGGACAGAAACCGCTGAAGTGCAATATTTGTGACAAACATTTTAAGCGTTTTTCGAATCTCGCTCAGCATCGGAAACGTCACGGTAAGCAGATCATTCGCAAAAAGGAATTCGTTTGTCATTGCGGTGAAGTTTTGCCTTCTAAAGCGCGATTCCTTTGGCACAAGGAGACTCACGACGCAAAGCCTAAATGCTGTCAATATTGCTGCGATCGTTTCGTGCATGCCAATTCGTTGCGTCGTCACATTCGGTTGGCTCACTCCGATAAATTCGATTACACTGAACCGATGGAGTGTCCAATGTGTAAACAAGTCTTCGCAAAATCGTCAATACGTGCTCACATGGCCATCCATTCCATGGACATGCAACATGTCTGCTCAATTTGTAGCAAATCTTTCTCCACCAAATGGAATCTAAAGATACACTCTTGGGTTCATGCCAATAGAACCGCCAAGCCCTTCAAATGCGAACACTGCCCCAAGGCATTTGTGCGTGAGGTAGATTTTAAGAATCACATAAACGCACATAAACAAATCAAGCCGTACACTTGCGAATATTGCGGATGCAAATTCATTCgcaaatacaattatttgcgTCATCGGCGTGAGCATCACGGTAATAAGAAATTTACCTGCGATCTGTGTAAGAAATCTTTCCATCGTCATTACTATCTGATTGAGCACCGGCGTATACATACCGGCGAACGGCCGTTCCAGTGCACTATTTGTGGGAAGAGTTCAACAACGAAGACCAATCACAACAAACATCTGAAGATACATCATTCACGAGATCCATTCACTGTGGaagcttaa
- Protein Sequence
- MVEKVQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQMTLPRLETKELPCYKESDPKVEEDKIDTEPKISKNAYKLENYSDLCINSNTNSIPSISFSSSNLPRSSSLSNEGQQQQSTEKPAPAMISNDFTNVPLTSKHTTLNSQNITLSPAYIGPIASTDNAVTDVKTSSTAINELPQPSTDFSSYTNRSSQHYQQSMSASTKHQQLNTRVKDSLNPVELVGQQIGELNNSSANLNNFHSPKQQHRQQLQLPPSLQVHQSQHVNALPNSLSLPQQQNLKVIYSPALPLSSSQLQAQVFNYQFPAQQSRQKPPPAYGTAISQIRSQHNQIKKGSQQIQQPQQQQQPHQQHLQQQQQLQHHVHRNADASISKQLYAKKNPLSNGVFPIKVTQNKQHQPPQQQCEVAHQHQQQFAKNVISNSAPTSSQRKFGTYQTCSDQSSAPTPANVSSSTEMLTLSSAVPPPPPLPSHTSLHSTRHAYSPYPSSLSISSSSCSSVLRYAESPVTAHYLERDNGDFIVQETPKRIVECVEKDNGEFSVIERIYQSPPSVLRIHDEDEDNAELEVVGDTNVKESSKDKKNQLETSKENDSDKLSQATEEELMRVDDRSEAEKSICGRALSSEDKERNNNIHMGGCSEKPTTSAAAAAASAAANGSNPQSRRKSPKNTITVLSDVQLNLNEYLDLVGNIIASSKIPKSQTLGVTAPIPLVKVEKVEPMDEYEEFEQCQDTKRNEKPRSMKVAVESINDSVSTAAKAITGSPCTPEPPNFTTYKSKENTSETDEIVENNFRNKTKLEEGTSSVSRASDGTVNEKLGKQNANSCSGHATTSVIRMATTTASQQYLMERMEEEHLGKSGKEASARNEETESVDVINASDRLKQVSLNNSSSIAEDLSPFTQIKSEALSTEAARVPSLPPPQKKGPKKLVIKPKSSTVENKTTSRMNSNQYSEEQPTSLSRVKMLESERDHMTKHSFPSKNVIKSEPNTSSEVTNTQEISINSFELKQEKSSSREESSIDFEHDGIRLDIKNEREELNNNNNNNNKSNVSKINIETAEDQLARSTPLRLDENTHGLLDFPSSSKTGILGTTATTNAHTFPSANSIFGVASSDKSALINSNSNSKLSPSLIATTSTTSRNALATLRCEDEFIIPDATDAVEEIVISSCYSSQSASDVALNNFGDTQNHQHHQQQQQNFTDYPFSFLYGGSSLANEIANKSNFAQIYQQQPHDITTAATLASGSNSTIEEYSSDPGRGDKTLSAYNHHDDAPSAPRLWYQSVSTSNAEFEASLAVDCGAAVSGDTGADDAGSYLDLDSYKRVNMIGGCEAQTMVAPSSSLSSFTAATESSLAGCTTDALNIRTDEKMPAKGEISEQESNCDIDNSWSQSIYGDIPVRFFKSSFPGLMPGENCWNNEEYFTVQDLSASAGTTNISNRATKSFDFRLPSQDAAASSPLSAAATSTGTTTGCSSPQHQSDNLPSTSSKKKRKRELNEPKNTPTAGTTVMASTSTGQTNATATVTSQDLLLQREKDHLQQHQRQLQQIYQDVPTTSAAMQANLTTVDATPPNSAQDAALNTKSANGQSRSGRVFSCIHCIAKFSRLRDRNLHMIALHNYVLRNYRLVPVQKVMAVSATAMARVTTGGQKNQEIERDSKQDIVKLEVELTEQIAVNKHSESMNTVGELMTKSELDEKDGLSDLAAEDISAVGENSTDPVFLPSLTRLYNLYHMLISFNIAALKQNQTLSEADEKLMLSSIFFCFICRQKFGTVKLYDAHMTEHPAECYTCGKKFHRWQNLSLHLKRHLGWKEFGCNICDKKFVVRSALVEHMRMHTGQKPLKCNICDKHFKRFSNLAQHRKRHGKQIIRKKEFVCHCGEVLPSKARFLWHKETHDAKPKCCQYCCDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQVFAKSSIRAHMAIHSMDMQHVCSICSKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHINAHKQIKPYTCEYCGCKFIRKYNYLRHRREHHGNKKFTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -