Basic Information

Insect: Physocephala rufipes
Gene Symbol: -
Assembly: GCA_963966595.1
Location: OZ016503.1:4643459-4645928[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.076 7.5 7.6 0.3 3 23 201 221 200 221 0.97

2 9 0.00011 0.011 16.6 0.7 1 22 226 247 226 250 0.92

3 9 0.62 61 4.8 0.4 1 23 286 309 286 309 0.90

4 9 0.009 0.89 10.6 4.1 1 23 315 337 315 337 0.96

5 9 0.0053 0.52 11.3 7.1 1 23 343 365 343 365 0.98

6 9 0.0026 0.26 12.2 6.1 1 23 371 393 371 393 0.98

7 9 1.3e-05 0.0012 19.5 4.0 1 23 399 421 399 421 0.99

8 9 7.2e-07 7.1e-05 23.4 2.9 2 23 526 547 525 547 0.96

9 9 3.5e-08 3.4e-06 27.6 1.4 1 23 553 575 553 575 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.076	7.5	7.6	0.3	3	23	201	221	200	221	0.97
2	9	0.00011	0.011	16.6	0.7	1	22	226	247	226	250	0.92
3	9	0.62	61	4.8	0.4	1	23	286	309	286	309	0.90
4	9	0.009	0.89	10.6	4.1	1	23	315	337	315	337	0.96
5	9	0.0053	0.52	11.3	7.1	1	23	343	365	343	365	0.98
6	9	0.0026	0.26	12.2	6.1	1	23	371	393	371	393	0.98
7	9	1.3e-05	0.0012	19.5	4.0	1	23	399	421	399	421	0.99
8	9	7.2e-07	7.1e-05	23.4	2.9	2	23	526	547	525	547	0.96
9	9	3.5e-08	3.4e-06	27.6	1.4	1	23	553	575	553	575	0.98

Sequence Information

Coding Sequence: ATGTGCCGCCTTTGTTCAGAAGAATCCTCGGAAGGTTATGAATTATATACAACAGACAGCCGTGAAAAGGATGAActtgttaaatatatttgcggCATGTTAAACACAAAAGATAATGAAATTGATGAAGATCAGCTGAAATGGTTATGCAAAGCTTGCTACGCAGGAGCCAATAAAACTAAGGAATTCATGCATTGCGTAGAGGTCGGGCAAATAAAACTCATGGAGCAAGGGCATACATCGGAGAGGTGCAAAGAACaagaaatcattgatttaaaatcaaacaGAAGACGAGGTAAAGAGGTAAAGAGAAAAGCTGAATCTGTTTCCAGGGAAGACAATGAACCAACGGAAATTAACAATAAGAGGGAACAGCAAGGGCCTAAGACTTCTGAGGCTGGATTCGTATTTCGTAAACCTTCaaagaaaaATATGCCAGAAATAGTATACCACAACGCAATTAATTCGCTGGAAGCTTCCTTAATCACCCCATCTTTCGCTGAAGTGCGTTCATTAGATGACACCTTGTTGGGTGAAATTGTAGAAGCCAAAACAACCGCCAATGAAGATACGACAATATCAATGCCAATATATGTGTTATGCGAATACTGCAGAGCAGCGTTTATAAAGACAAAAGAATTCTTAAAACATGTAGGAACGCATAAGAACTGTCGGTACGAGTGCACAAAATgtcttgaaaattttgccgATAAGGAAAATCTCAGTAAACACCAAAAGCAATCTGGACATGAAGGTGTTGGTATGATAGAGAATATTAATACTGAAGAAAGTTCCACTGGAGTAAATGATTTGACAATGGATGAAAATACTACAACGGATgaaaattccttaaaattcATTTGCATAGAATGCCAAAAGCAATTCAATAGTATGTATGTAGTGAAAAGCCATTATAGAGCTGTACATGTAGGTCACCGTACATTTAAGTGTAATTTTTGTGGAGCGAAATTTAAGacTAAATACAATTGCGATTTGCATTTGGCCACACACACTGGCGAAAAACGATACCAATGCAAATCTTgttcaaaaacatttaaaactaACTACGAATGTAAGAGGCATAACCGTATTCATACCGGCGAAAAACCATATAATTGCTCAGTTTGCAACAAACAATTCACTTTTCGTTGTAATTTCATCACGCATAAGCGGCTTCATACTGGCGAACGTCCATACAAATGTGATCATTGTGAAGCCAATTTTAGCACCATGTCGAGTTTAAAGAAACACCGAAATACCCATctgaaaaattctttgaaaaatgcTTCCATTGATACTAAAACCGTCGCTGAATCCCGCAATTTATTCACCACTAAAAGGAATGACCCCAAACAAATTATAACACCAACATCGCGGTCACTGCTCAAATCCTCCTACAATTCCCAACCGGAGTCAGCCGAAACCAAAACATCAcaatgtttaattaatattgaaaaggtGGAAATATTACCACCCATAACCATTCCTGATACAGCCGTAATCACCTCCAAAGATACGCATTTTTTGGAGAGTGAAATTCGAACGATGTGCCCTAGCAGTATTTCGTATAAACTCAATTGCTCTGTCTGtcggaaaaaattcaaacagagCAGTGCCCTACGGAAGCATCAACGGACTCATACCGGCGAACGACCATACAAATGTCCAATGTGTCCAAAATCATTTTCTGAtccttcaaattttaaaaaacataaaaatttgcaCAAGAATGCAACCCACGCTTTGGAAGGAGCTGCTCAATTAAATATGGCTACCATGCAAGAACTCCGTCAAATGTTAGCTGAGCAGTCAGTGGAGGTTATATCCGATAAGGAGGGCAGCATTTCCGACCCTGATCCTGATCGTTTAGAGACTTTTTCGTACTCAAACAAACAGAATTCGTTCACTTTATCACCGAGTGGCAGTGaatttgatgatgatgatgatgataatagtattaaaaatcAGCGGAAACGCAAAGCcagagaaattttattagctTTAAGAACTCTAAAATGCGGTAACGACTCATTGCTAGTGGACGATGGTGTTGCAATTTTAGACGAAGGGGAACCAACTAAGAGGCGGCCGCCTATAATAAACGACGATACGAATAAACAAGTCGTATGTCTACCATTTAAAGAATCGAACACAAGATCGCACAACAGCCTAATGAACAAGCCCCATTTTTTACATCTTATAAAggatgataaaaattaa
Protein Sequence: MCRLCSEESSEGYELYTTDSREKDELVKYICGMLNTKDNEIDEDQLKWLCKACYAGANKTKEFMHCVEVGQIKLMEQGHTSERCKEQEIIDLKSNRRRGKEVKRKAESVSREDNEPTEINNKREQQGPKTSEAGFVFRKPSKKNMPEIVYHNAINSLEASLITPSFAEVRSLDDTLLGEIVEAKTTANEDTTISMPIYVLCEYCRAAFIKTKEFLKHVGTHKNCRYECTKCLENFADKENLSKHQKQSGHEGVGMIENINTEESSTGVNDLTMDENTTTDENSLKFICIECQKQFNSMYVVKSHYRAVHVGHRTFKCNFCGAKFKTKYNCDLHLATHTGEKRYQCKSCSKTFKTNYECKRHNRIHTGEKPYNCSVCNKQFTFRCNFITHKRLHTGERPYKCDHCEANFSTMSSLKKHRNTHLKNSLKNASIDTKTVAESRNLFTTKRNDPKQIITPTSRSLLKSSYNSQPESAETKTSQCLINIEKVEILPPITIPDTAVITSKDTHFLESEIRTMCPSSISYKLNCSVCRKKFKQSSALRKHQRTHTGERPYKCPMCPKSFSDPSNFKKHKNLHKNATHALEGAAQLNMATMQELRQMLAEQSVEVISDKEGSISDPDPDRLETFSYSNKQNSFTLSPSGSEFDDDDDDNSIKNQRKRKAREILLALRTLKCGNDSLLVDDGVAILDEGEPTKRRPPIINDDTNKQVVCLPFKESNTRSHNSLMNKPHFLHLIKDDKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -