Basic Information

Insect: Physocephala rufipes
Gene Symbol: -
Assembly: GCA_963966595.1
Location: OZ016504.1:39479328-39480544[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.6e-06 0.00016 22.4 1.3 2 23 162 184 161 184 0.96

2 7 0.00016 0.016 16.0 3.6 2 23 214 235 213 235 0.97

3 7 2.8e-05 0.0028 18.4 3.3 1 23 241 263 241 263 0.98

4 7 1.8e-07 1.8e-05 25.3 0.5 3 23 271 291 269 291 0.97

5 7 7.4e-06 0.00073 20.3 4.2 2 23 298 319 298 319 0.98

6 7 1.6e-05 0.0016 19.2 0.7 1 23 325 347 325 347 0.96

7 7 7.1e-06 0.0007 20.3 0.3 1 23 353 376 353 376 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.6e-06	0.00016	22.4	1.3	2	23	162	184	161	184	0.96
2	7	0.00016	0.016	16.0	3.6	2	23	214	235	213	235	0.97
3	7	2.8e-05	0.0028	18.4	3.3	1	23	241	263	241	263	0.98
4	7	1.8e-07	1.8e-05	25.3	0.5	3	23	271	291	269	291	0.97
5	7	7.4e-06	0.00073	20.3	4.2	2	23	298	319	298	319	0.98
6	7	1.6e-05	0.0016	19.2	0.7	1	23	325	347	325	347	0.96
7	7	7.1e-06	0.0007	20.3	0.3	1	23	353	376	353	376	0.96

Sequence Information

Coding Sequence: ATGAATGAAACAGCTAAGAATTATTCGCAAACGAAGTCGCCCTTAGAAGAGGAACCTCAAATTGATATGATTTCTGACACATATTTGAGTGATGCTGCAAGCAAAGTGGACGAGTCGTCGTCGGAGGTAGCAACTAAGTTCGAGGACAGGGACCTGCCCATCGAATTCATGGAAGTACGACTTCCTAAACTGACAGGTAATAAGGCGGAGAATTTTATACCGGAACATGTAATGGACTGCTCAAGTATTCCCACAACCACATCCTCCGTAAGTCAGGAAGATACATTCGACACGCCGGAAATTACTCCTAATTCTAGAAGGAAAGTGGGTGCAAAGGATATTGAAACGTTGCGGCTCACACGTGCAATTTTGTCGAACAATCATGGaatgaaaactcaaaataCAAAAGGAGGACATAGGAACGTTTTGGATTTCAACGGCCAGATGAGATCAGAAgttaAAAAATCCGCTAATATACGATTGCAATGCAATCTATGCCAACGCAGCTATAAATCTAATAGCGGTTTACAACATCATATACGCGTGGCACATGAAGAAAATTCTGAGCTCACCGATGAAAAAACTCggtcaaatttgaatttggatAAGGATGAATCTGTTGATAAACCCATAGCAATTCAATGCAATACTTGTGGTAAATCATTCTCATGTCTTGGTAATTTAAATACACACAAGAAACGTCACACTGGAATAAAGTCTCACAAATGTCAAGACTGCGAAAAAGTTTTCTATACGGATCACGAATTGCAATCGCATTTAATGATACATTCAGATATGCTTCCAGTAATTTGTGAAATATGCGGACGACGTTTTCGCAATACTGGCAAATTAAAGGCGCATATGCGACGACACACAGGGGAGAGACCTGCTAAATGTGAAATATGCGGCAAGTGCTTCTTTAGTAATCATGACTTAAACGTACATCGAATTACACACACGTCTGAGCGTCCATTCGCATGTGAGGTTTGCGGTTCCACATTTCGTACTAAAAAAGCTTTACgggttcataaaaaattacatatttccgAACGGGAGTATCAATGCAAATTGTGCAATAAGGCTTTTGTGCAGCTGAGCGGCCTGGATTCGCATATGAGTCAGGTGCATATGAAAAGCTACACTTTTAAGCTAATAGCATAA
Protein Sequence: MNETAKNYSQTKSPLEEEPQIDMISDTYLSDAASKVDESSSEVATKFEDRDLPIEFMEVRLPKLTGNKAENFIPEHVMDCSSIPTTTSSVSQEDTFDTPEITPNSRRKVGAKDIETLRLTRAILSNNHGMKTQNTKGGHRNVLDFNGQMRSEVKKSANIRLQCNLCQRSYKSNSGLQHHIRVAHEENSELTDEKTRSNLNLDKDESVDKPIAIQCNTCGKSFSCLGNLNTHKKRHTGIKSHKCQDCEKVFYTDHELQSHLMIHSDMLPVICEICGRRFRNTGKLKAHMRRHTGERPAKCEICGKCFFSNHDLNVHRITHTSERPFACEVCGSTFRTKKALRVHKKLHISEREYQCKLCNKAFVQLSGLDSHMSQVHMKSYTFKLIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -