Basic Information

Insect: Physocephala rufipes
Gene Symbol: Clamp
Assembly: GCA_963966595.1
Location: OZ016502.1:335758-338206[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.7e-06 0.00056 20.6 2.6 1 23 136 158 136 158 0.99

2 7 7.6e-06 0.00075 20.2 1.0 1 23 434 456 434 456 0.98

3 7 4.5e-06 0.00045 20.9 0.1 1 23 462 484 462 484 0.99

4 7 3e-06 0.0003 21.5 3.2 1 23 490 512 490 512 0.99

5 7 1.8e-06 0.00017 22.2 0.4 1 23 518 540 518 540 0.98

6 7 1.5e-06 0.00014 22.5 0.4 1 23 546 568 546 568 0.98

7 7 8.6e-05 0.0084 16.9 0.2 1 23 574 596 574 596 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.7e-06	0.00056	20.6	2.6	1	23	136	158	136	158	0.99
2	7	7.6e-06	0.00075	20.2	1.0	1	23	434	456	434	456	0.98
3	7	4.5e-06	0.00045	20.9	0.1	1	23	462	484	462	484	0.99
4	7	3e-06	0.0003	21.5	3.2	1	23	490	512	490	512	0.99
5	7	1.8e-06	0.00017	22.2	0.4	1	23	518	540	518	540	0.98
6	7	1.5e-06	0.00014	22.5	0.4	1	23	546	568	546	568	0.98
7	7	8.6e-05	0.0084	16.9	0.2	1	23	574	596	574	596	0.96

Sequence Information

Coding Sequence: ATGGAAGACTTGACTAAAAACATTATATTCACTACTAATGCCATTGGTGCCAATGGACAGCCAACAACAATTCAATATCAGACAGCTGATGGTACTATTTTGAAACAACCAAAAATCGAGGGTCAAAAAACTGATCAACCAACTTTCTactacacaacaacaacaaacGGAAACACCGCCGTCAATTTGGCTCAATTAACTACCGACGATAACAAGACTTGTTATATTGCCCAGCCAGTGAGTGGTTATAATTACGCTTTAGTTAACGGTATGCAGCTTAATCAAGGTGGTGCCACTCTGGGCATAGCGACACTGGATGCCCAAGGTCGATTGCAAATTGTCAATCAGAATAAACCCATTGCCACGACAATATCGCCCTTACAAAATACTATATCAAATATTAGTTTCAAATGCGACATTTGTGGTCTCATGTTTTCTCATTTGGCGTTGCTCAATCACCACAAACGCATTCACGCTCAGGAGGGCACggatcagcaacaacagcaacaatcacagcaacagcaacaacagcagcagcagcaacaacagcaacagcaatctGATTCAATAGCGGTGGTGAATGCTCAGGGCGCTTTAGTGCAGACTCAAAATATTATCACAGAGAATGGCCAAATGGGGCAGATACAAATTGTGGCAACAGAAGCTCTGGAACCTGCCAATAATAACCAACAGCACAATgttctgcaacaacaacagcaacaagcACAATCTAACGAAAACAATCCAGCATCGGCAGCAGCGAAATCACATTCAAAATGTGCCTCCTGCGGCAGTCCAATGCTCCACGCCACCACCAACAAACGCAAAGGACCAAAAGTAGTACGCTGCGAACAGTGCGTTCAAGCCGATCAAGCCGCTCAGCaagccgttgctgctgctcagCAAGTGCAACCAACACAGATTTTTGTGGCACCAGATGGTGAAATCAAGTTTGAAATGAACGAAATGCCTAGCGGCACCTCCGATTCATCAATGGATTCGTTGACGGCTCAAAATATCATTCCGGGACATTTGCATCCAGTCCAAATAATATCTACAACCCCACAAGCTCAACAGCAGTTGCAAAATATTGTTGCACAACAGACCCAACAACAGGGAACAATGGTAAAGAGAGAGATGTGTACATCCGGCCATCATCCAGTGCGTAAACGTAACACCCAGCAAGTGACCAAATGTCAGAAGTGTAACGGCTCGGGAGTGATTTACGTTGGGACCGGAAGTGCAGCGGGTCAAGCTACTAAACAGGCAGCTAATATTAAGCAAGAAACTCCAAAACCTTTCACCTGCAATATTTGTGGAGGCACCTTTTCACGCTACTCTAGTTTGTGGTCGCACAAGAAACTCCATAGCGgtgagaaaaattataaatgcacCATTTGTGGTTTAGCTTTTGCTAAAGcggtttatttgaaaaatcatgCCCGCATTCATACCGGCGAAAAGCCTTACAAATGTCAGACTTGTGGCATGCAATTTTCGCAATCACCACATCTCAAAAACCATGAGCGCACGCATAGCGGTGAACGACCGTACGTATGTGAAGTCTGCGATAAAGGATTCGCTCGACACGCAACACTCTGGAACCATCGACGTATTCACACCGGCGAAAAACCTTACAAATGTGAAATTTGCGGATCGGCATTCTCTCAGGCCGCCCATTTGAAGAATCACGCCAAAGTGCACTCCGGTGAAAAGCCATTTAAATGTGACATCTGTTCTGCAGCGTTTGCTGATCGATTTGCACTAAAGAGGCATCGTGGCATCCATCAGAAATATGGACAAACCGCACCACGTCAACCTGCACAAacacaacagcaacaaccgcAAACTATGAACACCGATGGTCAGTCGGTGATTATACATAAACAGGAAATAACCGAAATGGAAGATGATGCTCAACACGAAGTAGTCATTTCGggtttatag
Protein Sequence: MEDLTKNIIFTTNAIGANGQPTTIQYQTADGTILKQPKIEGQKTDQPTFYYTTTTNGNTAVNLAQLTTDDNKTCYIAQPVSGYNYALVNGMQLNQGGATLGIATLDAQGRLQIVNQNKPIATTISPLQNTISNISFKCDICGLMFSHLALLNHHKRIHAQEGTDQQQQQQSQQQQQQQQQQQQQQQSDSIAVVNAQGALVQTQNIITENGQMGQIQIVATEALEPANNNQQHNVLQQQQQQAQSNENNPASAAAKSHSKCASCGSPMLHATTNKRKGPKVVRCEQCVQADQAAQQAVAAAQQVQPTQIFVAPDGEIKFEMNEMPSGTSDSSMDSLTAQNIIPGHLHPVQIISTTPQAQQQLQNIVAQQTQQQGTMVKREMCTSGHHPVRKRNTQQVTKCQKCNGSGVIYVGTGSAAGQATKQAANIKQETPKPFTCNICGGTFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHQKYGQTAPRQPAQTQQQQPQTMNTDGQSVIIHKQEITEMEDDAQHEVVISGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00352036;
90% Identity: iTF_00366685;
80% Identity: -