Basic Information

Insect: Physocephala rufipes
Gene Symbol: -
Assembly: GCA_963966595.1
Location: OZ016501.1:17226613-17229034[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0043 0.42 11.6 1.9 1 19 325 343 325 348 0.90

2 11 0.065 6.4 7.8 0.4 3 21 417 435 416 436 0.95

3 11 4.6e-06 0.00045 20.9 0.1 1 23 444 466 444 466 0.98

4 11 0.00063 0.062 14.2 0.3 1 23 470 493 470 493 0.93

5 11 6.2e-05 0.0061 17.4 0.3 2 23 500 521 499 521 0.98

6 11 9.7e-07 9.6e-05 23.0 0.9 1 23 527 549 527 549 0.95

7 11 4.6e-05 0.0045 17.8 0.4 1 23 555 577 555 577 0.99

8 11 1.9e-05 0.0018 19.0 2.7 1 23 583 605 583 605 0.99

9 11 0.00035 0.034 15.0 0.5 1 23 611 633 611 633 0.98

10 11 0.0069 0.68 10.9 8.0 1 23 639 661 639 661 0.98

11 11 0.0013 0.13 13.2 4.7 5 23 670 688 667 688 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0043	0.42	11.6	1.9	1	19	325	343	325	348	0.90
2	11	0.065	6.4	7.8	0.4	3	21	417	435	416	436	0.95
3	11	4.6e-06	0.00045	20.9	0.1	1	23	444	466	444	466	0.98
4	11	0.00063	0.062	14.2	0.3	1	23	470	493	470	493	0.93
5	11	6.2e-05	0.0061	17.4	0.3	2	23	500	521	499	521	0.98
6	11	9.7e-07	9.6e-05	23.0	0.9	1	23	527	549	527	549	0.95
7	11	4.6e-05	0.0045	17.8	0.4	1	23	555	577	555	577	0.99
8	11	1.9e-05	0.0018	19.0	2.7	1	23	583	605	583	605	0.99
9	11	0.00035	0.034	15.0	0.5	1	23	611	633	611	633	0.98
10	11	0.0069	0.68	10.9	8.0	1	23	639	661	639	661	0.98
11	11	0.0013	0.13	13.2	4.7	5	23	670	688	667	688	0.96

Sequence Information

Coding Sequence: ATGTCTGTGgacattgaaaaaatttgtagaaCATGTCTTGCTCTTAGTGGGCCATTGCTATCAATTTTTGACGGAGCTCCTAAGAGCGGTGGTGATTCCGGGTGTGTGGCTGATATGCTTAGAGACTTTACCAAAATAAAGCCAAAGCCTTCAGACAATCTACCCGAAAAAGTATGTCTTAGTTGTATCAGTGAAATCAATCGTTGCTACTCCTTCAAAATGAAGTgtgaaaatgcaaataaaacatTGCATCAATTGCTATATGAGACAGTTGGAGAGGCGTTGGAGGAGGAGGGGGAAATTGACCATGCAAAACCGAAGGTGGTTCAATCGGATAAAGAAGTGCAAACTGTGCTGATAGAGCAAACTGTAAAATGTCCTTCAGTGgaacaaacacacaaaagTGTACAAACTGAAGAGCAAGCTGAAATGCTTCCACAAGTGTTTTGTGATAAATTTTCTGATAAAGAACTGACAAAAGTTCTGAAACAGGAATCCGGAAGTTCACAACAGGAAAGCCTCGAGATTAATCCAAATGATTGCGATGTTAAAGTTTTACATCCCAGGAGagttaatataaaagaaataaagcttAAGCAAACTGAGTTTAGTGATGACCAAGATCGAAATGACGACGATATTATATTCGAGCTACAAACCGAAAGCGGTCAAGACGGCAATGAAGCTGAAAATCAATCCGATGTGGGTGAAATAGAAGCCAATACCGCTTACTATGTCCTCTCGGAATCCCAGGAAAATGATGAAGATACACCTAATGCGTGTTACGATAGTGAACCAGATATACAGATGAGCAATAATGAAGATGATGAACCTTCGCCAAATCATGACTACAATTTCACTATTATTCAAACAGAGGAAGGCAAAGAGGAAATAACTGCTACAGCTTCCAGGCATTTAGTTAAAGACAAAGTTCGCAATCTTCTTAGGGGAACcaatcaagaaaaaaacaaatacaaatgtcCGGCTTGTCCTTTTACATTCTCTTTGTTAAATAACTTAAAGCGTCATTGCATTAGAGTTCATGATTGGTCATCAATTGAGTTAAATCGATTGCACGGAGAAGAACTGACACTTCCAGAGGATATGCAGGAAACAATATTGCAAGAGCTCGAAGATGAAATCATTTTTGAAAGGGAAGAGCGAGGAGGTCAAAATCAGGAATTAGGGGATGAGATTACGGATATATCTAAAACTTCTACAACAGCTCCCACCGCCCCAACAGTATTTTGTCCACGTTGCAATGCTGGGTTTGCGTTTCGCAAATCATTGAACTATCATTTGAAACAGAATCAGTGTACGGTAAAGACATACGAATGTGGTGATTGCCAAAGGGTATTTACAACTTCGGAAGGCTTGGAGGAGCATCAAGAATCGCATTTGTTGGATCACGTCTGCAGCGAATGCAAGAGTGTGTTCGAAGATAAAGAGGAATTGAGTAAACATTTGATTGAGGTGCACAATCGCAGCAAGAGAAATCAGTGCAATGTTTGCAAACAAGTATTTACTATGGTGTCGGCGTTAAAGGATCATTTGCGTATACATAGCGGCGAAAAGCCCTTTCTGTGTCAAACCTGTGGGAAAGCATTCCGACAGAATGCTAATTTGAAGCAACACGTTATGCGTCATTCCAACATTAAACCCTATGAGTGCGACGAATGCTCCGTTCGTTTCGTAAGCAAGGCGGAACTATTGTCACATAAACGCAGGCACACAGGCGATCACCCCTTTAAATGTGACTTCTGTGATGCTCGTTATACAACCTCCAGTTCCTTGGTGAAGCACAAAAGGAAACACACCGGTGAACGGCCGTATGCGTGCGAGTACTGTCCAATGCGTTTTACAGCTCTGAATGTCCTTAAAAATCATAGGCGTACACATACGGGCGAGAAACCGTTTCATTGTTTCTTCTGCAACAAAGGATTTACGCAAAAGAGTGACTGTCAGATACATCAACGTACTCACACAGGCGAGAAACGTTACACATGTCATTGTGGAGCTTCCTTTACTCATTTATCTTCGTTGAGAATGCATCAGAAGACTCATGATAGTGAAAAGGACGGCGATACTGGCAGTACAGATGCTAACGGAACAataagaaaacgaagaaaattGAGGTCTGAAGAAACTACGCAATCTAAAAAGGAGAACACTAAAAAGCCATACAAAATGTGTGACGATGCATCGCAAGCAGATGATGATACCGTCACAATTGTAAATGCTGCAGGTCATGAGGAAGAGTTTATGGATATAGCGATGGATAAGGTAGAAATGAGTGATATTTGCTAA
Protein Sequence: MSVDIEKICRTCLALSGPLLSIFDGAPKSGGDSGCVADMLRDFTKIKPKPSDNLPEKVCLSCISEINRCYSFKMKCENANKTLHQLLYETVGEALEEEGEIDHAKPKVVQSDKEVQTVLIEQTVKCPSVEQTHKSVQTEEQAEMLPQVFCDKFSDKELTKVLKQESGSSQQESLEINPNDCDVKVLHPRRVNIKEIKLKQTEFSDDQDRNDDDIIFELQTESGQDGNEAENQSDVGEIEANTAYYVLSESQENDEDTPNACYDSEPDIQMSNNEDDEPSPNHDYNFTIIQTEEGKEEITATASRHLVKDKVRNLLRGTNQEKNKYKCPACPFTFSLLNNLKRHCIRVHDWSSIELNRLHGEELTLPEDMQETILQELEDEIIFEREERGGQNQELGDEITDISKTSTTAPTAPTVFCPRCNAGFAFRKSLNYHLKQNQCTVKTYECGDCQRVFTTSEGLEEHQESHLLDHVCSECKSVFEDKEELSKHLIEVHNRSKRNQCNVCKQVFTMVSALKDHLRIHSGEKPFLCQTCGKAFRQNANLKQHVMRHSNIKPYECDECSVRFVSKAELLSHKRRHTGDHPFKCDFCDARYTTSSSLVKHKRKHTGERPYACEYCPMRFTALNVLKNHRRTHTGEKPFHCFFCNKGFTQKSDCQIHQRTHTGEKRYTCHCGASFTHLSSLRMHQKTHDSEKDGDTGSTDANGTIRKRRKLRSEETTQSKKENTKKPYKMCDDASQADDDTVTIVNAAGHEEEFMDIAMDKVEMSDIC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -