Basic Information

Insect: Physocephala rufipes
Gene Symbol: zfh1
Assembly: GCA_963966595.1
Location: OZ016501.1:52742099-52746415[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00014 0.014 16.2 1.3 1 23 194 216 194 216 0.95

2 15 0.0013 0.13 13.2 2.3 3 23 224 244 222 244 0.95

3 15 0.00011 0.011 16.6 0.1 1 23 385 407 385 407 0.98

4 15 0.0015 0.14 13.0 1.5 1 23 413 435 413 435 0.97

5 15 3.1e-05 0.0031 18.3 2.7 1 23 465 487 465 487 0.97

6 15 0.0083 0.82 10.7 0.3 1 23 498 520 498 520 0.94

7 15 0.0094 0.92 10.5 0.6 1 23 526 549 526 549 0.96

8 15 0.26 26 5.9 0.4 5 19 560 574 557 575 0.91

9 15 0.00035 0.035 15.0 6.8 1 23 584 606 584 606 0.97

10 15 0.047 4.7 8.3 0.3 3 23 613 633 611 633 0.96

11 15 9.2e-06 0.0009 20.0 0.3 1 23 642 664 642 664 0.98

12 15 0.0046 0.46 11.5 0.2 3 23 672 692 670 692 0.97

13 15 5.6e-05 0.0055 17.5 0.5 1 23 698 720 698 721 0.95

14 15 0.081 7.9 7.6 0.1 1 23 731 753 731 753 0.96

15 15 0.012 1.2 10.2 0.0 1 20 1318 1337 1318 1340 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00014	0.014	16.2	1.3	1	23	194	216	194	216	0.95
2	15	0.0013	0.13	13.2	2.3	3	23	224	244	222	244	0.95
3	15	0.00011	0.011	16.6	0.1	1	23	385	407	385	407	0.98
4	15	0.0015	0.14	13.0	1.5	1	23	413	435	413	435	0.97
5	15	3.1e-05	0.0031	18.3	2.7	1	23	465	487	465	487	0.97
6	15	0.0083	0.82	10.7	0.3	1	23	498	520	498	520	0.94
7	15	0.0094	0.92	10.5	0.6	1	23	526	549	526	549	0.96
8	15	0.26	26	5.9	0.4	5	19	560	574	557	575	0.91
9	15	0.00035	0.035	15.0	6.8	1	23	584	606	584	606	0.97
10	15	0.047	4.7	8.3	0.3	3	23	613	633	611	633	0.96
11	15	9.2e-06	0.0009	20.0	0.3	1	23	642	664	642	664	0.98
12	15	0.0046	0.46	11.5	0.2	3	23	672	692	670	692	0.97
13	15	5.6e-05	0.0055	17.5	0.5	1	23	698	720	698	721	0.95
14	15	0.081	7.9	7.6	0.1	1	23	731	753	731	753	0.96
15	15	0.012	1.2	10.2	0.0	1	20	1318	1337	1318	1340	0.93

Sequence Information

Coding Sequence: ATGGACGCCCAATCCTATGGTATACAATGGATACAACATACATCCGATGATATAAAAACGGCAAGTGAACTCATCATTTCCGACAATCCGCCCGAACATGGTTTAATTAACGAAAATGATCATTCTGATTATCTGGTCGATCAGGTAGGCACTGAGGAGGATATTGACCAGATTGCGGCAGAGAATCTTATATTTATGGCACATGATGGTCAAATGGTTGCCGAAATTATCAATGCCACAGGTGGTGGCGGTACAAATAGAACTGTTGTTGTGGATGCTAGCGATGGTACACCCATCGATTGCGCGTTGTTAAGGCAATCTGAAGGAGAAAATTGCAGTATTAGCATTGATGGACAAGCAATCCAGACGAATGGGGgtgatttaattgaatttaatgagGAATACGGTGAAACTCAAATGGTAACTGAAGAAGTTATTACCGATGATTGGGTACAACCGCAAGGAGAGGAGagAGTTGAGATTCCGGCGGAACAAATAATTTGCTCTAATTCGCTCACTTCTCTGGATAATGAAGTTCCTTTACCTACAGTGCAGGATGAATACACGGCTCTCCGTCCCTATCCTTGTGATTTTTGCAGTCGCCGTTTTCGTAAAAAGACCAGTCTTATGAATCACATGGTTGCGCATCAAAACGATCGACCTCATTTATGCAAATTGTGCGGCTCACGATTTTTTCGACGTTCCGATTTAATTAATCACCTTAAGGCACACGCTGAAATGCCCGATCCGGAATTTGACGATGTCGAGTTTTTGCATTTTGTGGAAGAAGAGGCCATtgatcaacagcaacaacattcaAACGACCACTTCTACGATCAAGAATGGAATCGCCAATCAAATTCCAGTCGAACTAAATCAACTCGTAAAACACTTTCTGCCAATTCGACTGAATGTGGGAGTGCTTCCTACACGCAGCGCGGGCGCATAAGTAGGATCAAACCCAAAGAGGAAAACAACTATACCATAGATGAAACACTGAGTGAGAACCAACGGACCGGTGGAAAGATTCGTAACTCTCGGTTCGAGCAATATGAAGATTGTTCAGAGCTGCAAACGAAAAATGCTAATCCCGGTGCCGGTGTGATTGAAGaggataaaaaacaatttcccgTCTTAGACGAAAACAAACCCTTCGTTTGTCAGCAGTGTGGATTGGCATTTGCCCGTGAGAAAGCATTGATGGCGCATGTCAAGAATCATCGTACCGATTCTCCTCACGAGTGTAATCGTTGCAATGAGATGTTCTGGGACTCGTCTAGTTTGCAGGATCACCTCAAATCTCACCAGTTTGAGGAAAGCAATTCGGAATACGAACCTGCTGAGGCTGATGAGGTACAAAGTGACTCCGAGTCGGAGTATTTGTACGGTGAGTTTTATTGCAGCGTTTGCGGTATGTCTTTTCATAGGCAAGATCTCCTCAAGAGGCACGCGAAACAACACGTCAAGAATGAAGATGATTCGAAGGATCGTCATTGTTGTAACACTTGCGGTGAAACATTTGCTGAAGCGTTGGATTTATTGGCTCACGCAGAGATACACGCACGTTATCCTCCATTCAAatGCGTTCTTTGTGGTGAATCGTTTTTCGAGGAAACTACTATCAAACGACACCTTAGCAGTATGCATTCGAATGAAATTACTATTAATTCCTGCATTCTCTGCGGCAAAGAATGTCGCGATCGCAAAGCCCTCATGAAGCATGCATGGGACCATTCTCGTGAGAAATGTCATTCTTGTTCGAAATGCggtaaaaattttcacaacAAAGCTCGCCTTAAGCGCCACATGACCTCACATCGCGATAAGTCAGTTATTTGTGATGTTTGCCAGGAAGAGTTTCCTGATGGTCGTAGTCTTTCGAATCATCGGCATTCACACAATGCAGCCACGTCGGGGAAGCTATTTCCTTGTAATGAATGCGGGAAGACTTTCGGTTCGCGCAGCTCTCAACAAATACACGTTCGTATACATACAGGCGAACGTCCCTATGGTTGTCGCTTTTGCTGGAAAGCATTCGCCGATGGCGGCACTTTGCGCAAACACGAACGCATTCATACGGGGGAAAAGCCCTACGCGTGTTCGGTATGTCCAAGGGCTTTCAATCAACGTGTAGTTTTGCGTGAACACATCCGTTCTCATCATTCGGGATTGGATAGCAAACGTGGAACGTACTTTTGTAAGGTTTGCAGCGCTGAGTTGGATACGTCTAATGACCTTATACAACATCTTATACAACACAGTGATCAAAACACTGCCATCCAACGTCAGCCCattACCGGGCCGCGCAAATACAAGCGCCGACGCAAGTTGAAACCTCATGAAATCGCTCAGCTTCGTAAAGAGAAATCAACCGATGGCAAAGACGGGCTTGGTGTTGCAGTCGGTAGCGATATTGAAATATCTGATTTTGATATGGATAACGTGGATGATTTGTTGGGTATTACAGACACTGGTTCAGGATCTTCGAGTGCCAATAATAAGCAGCACAGCAAACGAGTTGCGCCAGCCGGTGAACACGAGTCaaatgtaaaaacaatttgCCGTCATGAGCAACATGTCTCCCCTTCATCTGGTTCCGAGGTCTTGCCAAATTACGATAAGGACAATCACAGTTGGCAAACTAAGCTTATCACCACGAATGTAAACGACGAAAACTACAAGTCATTGCTGTCAAATTTAGAAAACACTTTACAAAGCATCGACACATTGGTGGTTGGCGTAGGGAGTACCGAGAATCAAAAGGATAACGGTTTTAAGCGGAATACAGAAGACATAGATGCGTCAAGTTGTTTGATAAAAGATGAACCAGCTGCTATTAATGATCAGCAGACTATTAGCACAGCAGCCCGTGTAAGAAGCACCAATAAAAGAATGATTCAGAAAAATATGAACACGTCCCCGCGACCGCGAATGATACACACAGAACGAACTCGTCTTCAAACGGATAGGCTAATTGAAGGTACCAAAAAGACAAATAAAGTGTCTTCTAAACGTAATGAAGCCCGAAAAATACAGCTAGCGTCAAGTCATTATCAAAATAATGACACAAACAGCCATAATCTTCTGAATGAATATGAAATGGCTTTGCATCACATGCCCACTTCCAGTAATCATGACATCGCTTCCAATTCGATGGCAGGAATTAAGCAAGAATTTAATTACCAAAATAACGATCATCGCAGCAATACCAAACACGGCGACTCGCAGAATCATCGCAACGGTAGCCTATACGATGCTCATCTATTATTGGAAGCCGCTACTTTGcgtaaagaaatttatgagaAATATAATCCTGATCTAGTTAGCGATTTGGAGGAAATTCTTCGCTCACCGGACAAATCGTCTGATAAGATTCGGCAACGTTTTACAAGTGAATCCTCATCGACGACGAACTACTTGGTTGAACCAACTTCTGAAGAAGACcaccattttattaaaattgaaccaACATCACCTGATATACACGATATTGTTGCAGGCAGTAGTAGTTGTGTCAGTGGTATCAGTAGTCATAGAAACGAGGGCCAAGTTGTAAAACGTAGTATGCGTAGGCGGCCCGTGGCGAACcgtaaatatttagaatttgaAACTGAATTGACAAAACTATCAAGTAGTCGAAGTTCTATGAGTCCAAAAGGAATTCATGATCATGACGAGTATAAATCCAGAGCGAGTagattttcaaaatcaaatccaACCGAATGTtccaaaaactatttaaactaCGATTCACATGATTATCGAGCTGTTAAAGGAGAAGAATCTGAAGATCCTTCTGGCTCAGAAAGAGTTAGTGCTAACAATGTCAATAATTCGTTTTCGTCGATTTCCGCTGTTGTagaagctgcagcagcagcggcggctgATGATGCTGCAAAAGCATCAAATTCATCACCTTCGAAGAACACTGCGGAACATAAAAGGCGTTTCTATGAATGTGAAATGTGTTCAGCTGTGTTTCCTGATCGGGCTCAACTCCTCGATCATGTTCCCATTCACATCTAG
Protein Sequence: MDAQSYGIQWIQHTSDDIKTASELIISDNPPEHGLINENDHSDYLVDQVGTEEDIDQIAAENLIFMAHDGQMVAEIINATGGGGTNRTVVVDASDGTPIDCALLRQSEGENCSISIDGQAIQTNGGDLIEFNEEYGETQMVTEEVITDDWVQPQGEERVEIPAEQIICSNSLTSLDNEVPLPTVQDEYTALRPYPCDFCSRRFRKKTSLMNHMVAHQNDRPHLCKLCGSRFFRRSDLINHLKAHAEMPDPEFDDVEFLHFVEEEAIDQQQQHSNDHFYDQEWNRQSNSSRTKSTRKTLSANSTECGSASYTQRGRISRIKPKEENNYTIDETLSENQRTGGKIRNSRFEQYEDCSELQTKNANPGAGVIEEDKKQFPVLDENKPFVCQQCGLAFAREKALMAHVKNHRTDSPHECNRCNEMFWDSSSLQDHLKSHQFEESNSEYEPAEADEVQSDSESEYLYGEFYCSVCGMSFHRQDLLKRHAKQHVKNEDDSKDRHCCNTCGETFAEALDLLAHAEIHARYPPFKCVLCGESFFEETTIKRHLSSMHSNEITINSCILCGKECRDRKALMKHAWDHSREKCHSCSKCGKNFHNKARLKRHMTSHRDKSVICDVCQEEFPDGRSLSNHRHSHNAATSGKLFPCNECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDSKRGTYFCKVCSAELDTSNDLIQHLIQHSDQNTAIQRQPITGPRKYKRRRKLKPHEIAQLRKEKSTDGKDGLGVAVGSDIEISDFDMDNVDDLLGITDTGSGSSSANNKQHSKRVAPAGEHESNVKTICRHEQHVSPSSGSEVLPNYDKDNHSWQTKLITTNVNDENYKSLLSNLENTLQSIDTLVVGVGSTENQKDNGFKRNTEDIDASSCLIKDEPAAINDQQTISTAARVRSTNKRMIQKNMNTSPRPRMIHTERTRLQTDRLIEGTKKTNKVSSKRNEARKIQLASSHYQNNDTNSHNLLNEYEMALHHMPTSSNHDIASNSMAGIKQEFNYQNNDHRSNTKHGDSQNHRNGSLYDAHLLLEAATLRKEIYEKYNPDLVSDLEEILRSPDKSSDKIRQRFTSESSSTTNYLVEPTSEEDHHFIKIEPTSPDIHDIVAGSSSCVSGISSHRNEGQVVKRSMRRRPVANRKYLEFETELTKLSSSRSSMSPKGIHDHDEYKSRASRFSKSNPTECSKNYLNYDSHDYRAVKGEESEDPSGSERVSANNVNNSFSSISAVVEAAAAAAADDAAKASNSSPSKNTAEHKRRFYECEMCSAVFPDRAQLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -