Pruf018224.1
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- -
- Assembly
- GCA_963966595.1
- Location
- OZ016504.1:39465911-39471148[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.02 2 9.4 1.0 1 23 212 235 212 235 0.94 2 14 0.00012 0.012 16.5 2.4 2 23 263 284 262 284 0.97 3 14 0.00018 0.017 15.9 2.7 1 23 290 312 290 312 0.98 4 14 1.8e-07 1.8e-05 25.3 0.4 3 23 320 340 318 340 0.97 5 14 1.7e-05 0.0017 19.1 2.4 2 23 347 368 347 368 0.98 6 14 0.00046 0.045 14.6 0.4 1 23 374 396 374 396 0.97 7 14 0.00017 0.016 16.0 0.1 3 22 410 429 409 429 0.95 8 14 0.19 18 6.4 0.7 2 13 437 448 437 449 0.89 9 14 4.3e-06 0.00042 21.0 1.3 2 23 694 716 693 716 0.96 10 14 0.00051 0.051 14.5 3.2 2 23 746 767 745 767 0.97 11 14 0.00018 0.017 15.9 2.7 1 23 773 795 773 795 0.98 12 14 1.8e-07 1.8e-05 25.3 0.4 3 23 803 823 801 823 0.97 13 14 1.7e-05 0.0017 19.1 2.4 2 23 830 851 830 851 0.98 14 14 0.00046 0.045 14.6 0.4 1 23 857 879 857 879 0.97
Sequence Information
- Coding Sequence
- atgttAAACGTGTTATCTCCTCACAGGGAGAATTTCGCATCCATAAAATGCGGAGAGATATATTATGTAAACTCTATTTACAACGTAAACTGCTGCATTTGCGGAGGAAGATTATTGCTCAGTGAGTTTCCGAAACATTTCCACGATTTACATTTGAGTTTCGTGAATGAAACAACTAAAAATACTTCGGAACTTAAGACGTCATTAGACCAGGAGCCtcaaattgatattatttccgaCACAGATGGAAGTAATTCGTTCAAAGTGGGCGAGTCGTCGGAGGTACCAATTAAGGCCACGGAATGGGACCTGCCCATTGAATTCATAGAGGTACGACTTTCTAAATCGACAAGTAATAAGGTGGACAATTTTATACCAGAATATATAACGGACTGCTCAAGTATTCCCACGACCACATCCTCCGCAAGTCAGGAAGATACTTTCGATACGCCAGAAATTACCTCTAATTCTAAAAGCAAAGTGCGTGTAAAGGATATTGAATCGTTGCGACTCACAAATGCAATATTGTCAAATAATCatgaaataaaaactcaaaataCAAGAGAAGGCGATAAGGTTTTGGATTTCAACGGCCAGATGAGATCAGAAgttGAAAAACCCGCTAGTATACGATTTCAATGCAATCTATGCCAACGCAGCTATaaatctaatataattttaaaatttcatatgcGTGTGGCACACAGAGAAACTGCTGAGCCCACGGATGAAAAAACTCGGTCAACTTTGAATTTGGATAAGGATGAATCTGTTGATAAGCCCATTCAATGCAATATTTGTGGCAAATCATACTCATGTACTGGAAATTTAAGTACTCACATGAAACGCCATAGTGGAGTAAAGTCTCACAAATGTTCAGACTGCGAAAAAGTTTTCTATACCGATCGTGAATTGCAATCGCATTCAATGACACATTCAGATATTTTTGCTGTAATTTGTGAAATATGCGGACGACGTTTTCGCAAAATTAGCAATTTAAATGCGCATATGCGACGACACACTGGCGAGAGACCTGCTAAATGTGAAATATGCGGCAAATGCTTCTTTAGTAATTATTACTTAAGTGTGCATCGAATTACACACACGTCTGAGCGCCCTTTCGCATGTGATGTTTGCCCTTCTACATACCGTAGTAAGAAAGCACTAcgtgttcataaaaaaatacatatttccGAACGGAAACATTCAGATCTATATGCTGAAATTTGTGAGATATGTGGTCGCGGGTTTCGAATTTCGGCAAATTTGAAAGGACACATGCGCCGGTATACTGGCGAACGGCCAGCTAAATGCGTTGTTTGTGGAAAAAGTTTCTATAGCCAATACGTCCATTTCGAACTAAGAAAGCGTTGCGATTCCACTAAAAGCTCGACGTTCCTGATCGCCCACATTAATATGAGCTATGCAACAAAGGTTTTTTGTCTCGAATCTCATATGAAGGAGAATTTTGCAGCCATAAAATGTGGAGAAGTATATTATGTAAATTCTATTTACAACGTAAACTGCTGCATTTGCGGAGGAATATTATTGCTCAATGAGTTTCCAAAACATTTTCACGATTTACATTTGAGTTTCATGAATGAAACAGCTAAGAATTATTCGCAAACGAAGTCGCCCTTAGAAGAGGAACCTCAAATTGATATGATTTCTGACACATATTTGAGTGATGCTGCAAGCAAAGTGGACGAGTCGTCGTCGGAGGTAGCAACTAAGTTCGAGGACAGGGACCTGCCCATCGAATTCATGGAAGTACGACTTCCTAAACTGACAGGTAATAAGGCGGAGAATTTTATACCGGAACATGTAATGGACTGCTCAAGTATTCCCACAACCACATCCTCCGTAAGTCAGGAAGATACATTCGACACGCCGGAAATTACTCCTAATTCTAGAAGGAAAGTGGGTGCAAAGGATATTGAAACGTTGCGGCTCACACGTGCAATTTTGTCGAACAATCATGGAATGAAAACTCAAAATGCAAAAGGAGGACATAGGAACGTTTTGGATTTCAACGGCCAGATGAGATCAGAAgttaAAAAATCCGCTAATATACGATTGCAATGCAATCTATGCCAACGCAGCTATAAATCTAATAGCGGTTTACAACATCATATACGCGTGGCACATGAAGAAAATTCTGAGCTCACCGATGAAAAAACTCggtcaaatttgaatttggatAAGGATGAATCTGTTGATAAACCCATAGCAATTCAATGCAATACTTGTGGTAAATCATACTCATGTACTGGAAATTTAAGTACTCACATGAAACGCCATAGTGGAGTAAAGTCTCACAAATGTTCAGACTGCGAAAAAGTTTTCTATACCGATCGTGAATTGCAATCGCATTCAATGACACATTCAGATATTTTTGCTGTAATTTGTGAAATATGCGGACGACGTTTTCGCAAAATTAGCAATTTAAATGCGCATATGCGACGACACACTGGCGAGAGACCTGCTAAATGTGAAATATGCGGCAAATGCTTCTTTAGTAATTATTACTTAAGTGTGCATCGAATTACACACACGTCTGAGCGCCCTTTCGCATGTGATGTTTGCCCTTCTACATACCGTAGTAAGAAAGCACTAcgtgttcataaaaaaatacatatttccGAACGGAAGTAA
- Protein Sequence
- MLNVLSPHRENFASIKCGEIYYVNSIYNVNCCICGGRLLLSEFPKHFHDLHLSFVNETTKNTSELKTSLDQEPQIDIISDTDGSNSFKVGESSEVPIKATEWDLPIEFIEVRLSKSTSNKVDNFIPEYITDCSSIPTTTSSASQEDTFDTPEITSNSKSKVRVKDIESLRLTNAILSNNHEIKTQNTREGDKVLDFNGQMRSEVEKPASIRFQCNLCQRSYKSNIILKFHMRVAHRETAEPTDEKTRSTLNLDKDESVDKPIQCNICGKSYSCTGNLSTHMKRHSGVKSHKCSDCEKVFYTDRELQSHSMTHSDIFAVICEICGRRFRKISNLNAHMRRHTGERPAKCEICGKCFFSNYYLSVHRITHTSERPFACDVCPSTYRSKKALRVHKKIHISERKHSDLYAEICEICGRGFRISANLKGHMRRYTGERPAKCVVCGKSFYSQYVHFELRKRCDSTKSSTFLIAHINMSYATKVFCLESHMKENFAAIKCGEVYYVNSIYNVNCCICGGILLLNEFPKHFHDLHLSFMNETAKNYSQTKSPLEEEPQIDMISDTYLSDAASKVDESSSEVATKFEDRDLPIEFMEVRLPKLTGNKAENFIPEHVMDCSSIPTTTSSVSQEDTFDTPEITPNSRRKVGAKDIETLRLTRAILSNNHGMKTQNAKGGHRNVLDFNGQMRSEVKKSANIRLQCNLCQRSYKSNSGLQHHIRVAHEENSELTDEKTRSNLNLDKDESVDKPIAIQCNTCGKSYSCTGNLSTHMKRHSGVKSHKCSDCEKVFYTDRELQSHSMTHSDIFAVICEICGRRFRKISNLNAHMRRHTGERPAKCEICGKCFFSNYYLSVHRITHTSERPFACDVCPSTYRSKKALRVHKKIHISERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -