Pruf014414.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Physocephala rufipes
Gene Symbol
-
Assembly
GCA_963966595.1
Location
OZ016504.1:1709414-1712158[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0011 0.11 13.4 0.2 1 23 107 130 107 130 0.95
2 13 0.00039 0.038 14.8 2.5 1 23 135 157 135 158 0.95
3 13 5.2e-06 0.00051 20.7 3.8 2 23 168 190 167 190 0.96
4 13 0.00027 0.027 15.3 9.5 2 23 366 387 365 387 0.98
5 13 3.9e-05 0.0039 18.0 6.5 1 23 393 416 393 416 0.96
6 13 0.00015 0.015 16.2 0.2 1 23 421 444 421 444 0.95
7 13 6.8e-05 0.0067 17.2 4.9 1 23 454 476 454 476 0.97
8 13 0.0033 0.32 11.9 3.5 1 23 481 503 481 503 0.97
9 13 1.1e-07 1.1e-05 26.0 0.4 1 23 509 531 509 531 0.96
10 13 1.2e-07 1.2e-05 25.9 0.6 1 23 537 559 537 559 0.99
11 13 7.8e-07 7.7e-05 23.3 1.7 3 23 567 587 566 587 0.99
12 13 4.4e-07 4.4e-05 24.1 2.4 1 23 593 615 593 615 0.99
13 13 0.028 2.8 9.0 1.6 1 23 620 643 620 643 0.95

Sequence Information

Coding Sequence
ATGGAGCGTATCTGTCGCGTATGCTTGCAGAGTGACGTCGAGCTGTTTTTGCTGTTCGATGAAAATCACGCTCTGGATGGAGTTTTAGTATCGCAAATGTTGTCCGAATGTAGTATTTACAAGgtGGAACGTCATGATGATTTACCGCATCAAATTTGTAGCAATTGCATGGAAACTGCTAAAAATGCATATCTTTTTAAGAAACGTACAGAAAATTCATATCGTCAATTAGTCGGTTTAATAGATAATATCTGCCAAGAGCAGGTGATCACCGGCATAAAATCTGAACAATCAACGCAAACTGATAAATTGTCCATTTATCCTTGTGAAATGTGCGATGCAAAATTCTTTGAACCAGAGGATTTGCGTAATCATCGTTTGAATTCACACAAAGGAAACGATTATAAGTGCAAAGTGTGCGGACAAATGTTTGCACGTCTTCATCGTTTGAGAGGCCACTTAGCATTGCATCATCCCGAAGAAGGACTAACGCATGATACGAAGTGTACCGTGTGTGGGAAGCAATTCTCTAGAAGGGATCACATGAGgagacatttaaaaaatattcacggAAAAGTAATTCCTAACGTAGAAAGATGCAACAAAGCCACCTTGGAGGAGCCGGAAATAAATATCAAGCGCGAAGTGGATTCTCTGCAAGTTACGAATAACATTGTTAACAACATCAGCGGACCAAATACGTCAGTATGGGATGAATATTCTGTAAAAGAATCTGATAGCGACGATGCCGACAACGGTTTCAATGCTACTAATCCGATTTCCAGTGATAATCATGACGACGATGGTGATGAGGAGAAGCCTTTATGGGTTGACGCTGTTAAGAAACagttaaaaaCTGAACCTCTTGATGACGATATTCTCAACAGAGATTTGGAGGAACCCGCCACTTCAGCTTTggatgtaattttaaaatctgaagTTGACTGTGATGACTTTGAAAGGGaatatttaagtaataatGAAGATGAAGATGTGGAGGCAGAAGGACCAGCCGAAAAGACTTCAATAGTACGTGAGTATCTGGAAAATAAGGCACCCGTACGTCGACGTAATTTGTcgaaaattaaagataataaatGTCCCGAATGCCATCGGGTTTTTTCGCGGCATTGTCACGTACAACGTCACATGTTGACCCATACATCGGAGAAACCACATGAATGTCCGCATTGCTTGAAACGTTTTACTAGGCgtgatcatttaaaaaatcatgtacAAAGTCTACATGGTATCAAACAATACAAATGTGATCAATGCGAATTGGCTTTTCCACGCAATGAAGCATTGGCACGTCATAAAGCGTCCAAACATAATGACGGATTGAATGCGAATAAAGTGCATAAATGCGATTTCTGTGAGAAGTCTTTTGTCACAAAAACTTATTTGCGCAAGCATCGCCTACTACACACCGATCGTGTTTTTGCTTGCAAACATTGCGATGATACATTTAAAGAACGCTCGCTATTTCGAGAACATGAGAAAACGCATAATGTTGAACGCAACTTCCTGTGCTCTATTTGTGGTGAAAGCTTTGCACGCAATGACTATTTACGTGTGCATATGCGTCGCCATACCGGTGAGAAACCATATAAGTGTAAATATTGTGACAAAGGATTTCCCCGTGCCACCGATTTGAATGTACATATaagGTATCACACTGGTCACAAACCAAACCTTTGCAATCTGTGCGGTAAAGGTTTTCATCGGGCTTATAATCTCACTATTCATATGCGCACTCATACCGGAGAACGGCCATTCCAATGTGAACACTGTTCTAAAAGTTTTGCTCAGAGCAATGATTTAAAAGCGCATGTGCGTCGTCATACGGGCGAACGCTTTAAATGTCATAATTGTGAAGCTAGTTTTTTGCAGTTGTATGGTTTGCGACATCATGCTTTAATAGCTCATGGTATTCAAATGGACACAACTACGGGACGTTTGCAAAAGTTTCCGAAACTCGAGGAGGCAACGAAGTCAGCAttagaaaatcaatttcaaatgtCTTTGGGAACTACCGGAGTTCAAGAAACGCAACAGCAACAAGAGCAACAATCTCAACATGAACACAAGAAGCAGGAGCTCTCGCCACAACAGAGCCAGCACCCACAGCAACCGCCTCAGCAGGGCCAGCCTCCACAACATCAGCCTGCACAGGGCCAGTTGTCATCATCGCAAGAACAACATGCGTCCCAACAGGGGCAGCACTCGTCTCAGCAATCTCCACAACAGGTTTTGCATCAGGGTCAGCATTCGTCTCACCAGGGACAACAAGCAGCTCAGCAAGGACAGAATCCAGCTCAAGGACATCAGTTACATCAGCAACTACCAGGGCAACAGTCGCAAtcgcagcatcagcaacaccAGTTCCCATATGACCAACATCAACAGgtacaattacaattacagCGTCAGCACACACAAGTTGCCGCTTACGAAGTGGCAATTacgaagtaa
Protein Sequence
MERICRVCLQSDVELFLLFDENHALDGVLVSQMLSECSIYKVERHDDLPHQICSNCMETAKNAYLFKKRTENSYRQLVGLIDNICQEQVITGIKSEQSTQTDKLSIYPCEMCDAKFFEPEDLRNHRLNSHKGNDYKCKVCGQMFARLHRLRGHLALHHPEEGLTHDTKCTVCGKQFSRRDHMRRHLKNIHGKVIPNVERCNKATLEEPEINIKREVDSLQVTNNIVNNISGPNTSVWDEYSVKESDSDDADNGFNATNPISSDNHDDDGDEEKPLWVDAVKKQLKTEPLDDDILNRDLEEPATSALDVILKSEVDCDDFEREYLSNNEDEDVEAEGPAEKTSIVREYLENKAPVRRRNLSKIKDNKCPECHRVFSRHCHVQRHMLTHTSEKPHECPHCLKRFTRRDHLKNHVQSLHGIKQYKCDQCELAFPRNEALARHKASKHNDGLNANKVHKCDFCEKSFVTKTYLRKHRLLHTDRVFACKHCDDTFKERSLFREHEKTHNVERNFLCSICGESFARNDYLRVHMRRHTGEKPYKCKYCDKGFPRATDLNVHIRYHTGHKPNLCNLCGKGFHRAYNLTIHMRTHTGERPFQCEHCSKSFAQSNDLKAHVRRHTGERFKCHNCEASFLQLYGLRHHALIAHGIQMDTTTGRLQKFPKLEEATKSALENQFQMSLGTTGVQETQQQQEQQSQHEHKKQELSPQQSQHPQQPPQQGQPPQHQPAQGQLSSSQEQHASQQGQHSSQQSPQQVLHQGQHSSHQGQQAAQQGQNPAQGHQLHQQLPGQQSQSQHQQHQFPYDQHQQVQLQLQRQHTQVAAYEVAITK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-