Basic Information

Insect: Physocephala rufipes
Gene Symbol: -
Assembly: GCA_963966595.1
Location: OZ016501.1:4127532-4132700[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.00041 0.04 14.8 0.9 1 23 271 293 271 293 0.97

2 25 0.0013 0.13 13.2 7.1 1 23 299 321 299 321 0.97

3 25 0.086 8.5 7.5 1.0 2 23 354 375 353 375 0.97

4 25 0.0024 0.24 12.3 1.2 1 23 452 475 452 475 0.96

5 25 0.0018 0.18 12.7 0.3 1 22 482 503 482 503 0.97

6 25 1.4e-05 0.0014 19.3 0.5 2 23 548 569 547 569 0.94

7 25 0.008 0.78 10.7 1.4 2 23 577 599 576 599 0.95

8 25 0.38 38 5.4 1.8 2 20 607 625 606 628 0.91

9 25 0.016 1.6 9.8 1.6 1 23 713 736 713 736 0.97

10 25 1 99 4.1 1.4 1 21 744 764 744 765 0.91

11 25 0.016 1.6 9.8 0.3 2 23 775 797 774 797 0.96

12 25 0.0025 0.25 12.3 1.9 2 21 813 832 812 834 0.94

13 25 6.1e-07 6e-05 23.7 0.5 1 23 841 863 841 863 0.98

14 25 3.5 3.4e+02 2.4 2.2 3 23 904 924 902 924 0.79

15 25 0.015 1.4 9.9 3.1 1 23 1025 1047 1025 1047 0.95

16 25 0.00025 0.025 15.4 3.0 1 23 1054 1076 1054 1076 0.98

17 25 0.062 6.1 7.9 0.2 3 21 1104 1122 1102 1123 0.95

18 25 0.28 28 5.9 1.2 1 17 1190 1206 1190 1213 0.81

19 25 0.28 28 5.9 0.4 2 23 1251 1273 1250 1273 0.94

20 25 0.0012 0.12 13.3 3.7 1 23 1302 1325 1302 1325 0.98

21 25 1.3e-05 0.0013 19.4 0.2 2 23 1359 1380 1358 1380 0.95

22 25 0.00022 0.022 15.6 3.1 1 23 1386 1408 1386 1408 0.99

23 25 2.1e-07 2.1e-05 25.1 3.4 1 23 1414 1436 1414 1436 0.98

24 25 1.9e-07 1.9e-05 25.3 2.4 1 23 1442 1464 1442 1464 0.99

25 25 0.0015 0.15 13.0 0.1 1 22 1470 1491 1470 1494 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.00041	0.04	14.8	0.9	1	23	271	293	271	293	0.97
2	25	0.0013	0.13	13.2	7.1	1	23	299	321	299	321	0.97
3	25	0.086	8.5	7.5	1.0	2	23	354	375	353	375	0.97
4	25	0.0024	0.24	12.3	1.2	1	23	452	475	452	475	0.96
5	25	0.0018	0.18	12.7	0.3	1	22	482	503	482	503	0.97
6	25	1.4e-05	0.0014	19.3	0.5	2	23	548	569	547	569	0.94
7	25	0.008	0.78	10.7	1.4	2	23	577	599	576	599	0.95
8	25	0.38	38	5.4	1.8	2	20	607	625	606	628	0.91
9	25	0.016	1.6	9.8	1.6	1	23	713	736	713	736	0.97
10	25	1	99	4.1	1.4	1	21	744	764	744	765	0.91
11	25	0.016	1.6	9.8	0.3	2	23	775	797	774	797	0.96
12	25	0.0025	0.25	12.3	1.9	2	21	813	832	812	834	0.94
13	25	6.1e-07	6e-05	23.7	0.5	1	23	841	863	841	863	0.98
14	25	3.5	3.4e+02	2.4	2.2	3	23	904	924	902	924	0.79
15	25	0.015	1.4	9.9	3.1	1	23	1025	1047	1025	1047	0.95
16	25	0.00025	0.025	15.4	3.0	1	23	1054	1076	1054	1076	0.98
17	25	0.062	6.1	7.9	0.2	3	21	1104	1122	1102	1123	0.95
18	25	0.28	28	5.9	1.2	1	17	1190	1206	1190	1213	0.81
19	25	0.28	28	5.9	0.4	2	23	1251	1273	1250	1273	0.94
20	25	0.0012	0.12	13.3	3.7	1	23	1302	1325	1302	1325	0.98
21	25	1.3e-05	0.0013	19.4	0.2	2	23	1359	1380	1358	1380	0.95
22	25	0.00022	0.022	15.6	3.1	1	23	1386	1408	1386	1408	0.99
23	25	2.1e-07	2.1e-05	25.1	3.4	1	23	1414	1436	1414	1436	0.98
24	25	1.9e-07	1.9e-05	25.3	2.4	1	23	1442	1464	1442	1464	0.99
25	25	0.0015	0.15	13.0	0.1	1	22	1470	1491	1470	1494	0.90

Sequence Information

Coding Sequence: ATGGAGCCGGATTTCGAGTATTTGCGCTGCAACGCCAAATCAATGTGCCGGACTTGTTATGAAATCAGTCTGCATCTTCATCCGTTGCATGAGAAGACAGAACAATTTCCTCTCAAGTCATTGGCGGACCTTTTATTTGACGTTGCGCAGATTGAAATAAAACAAGTCGCCAATGACGATGTTTTGCCCTCTCACATCTGCGGGAATTGTTCACGGAAGCTTAAGAATGCATATAAGTTCGTCCAAAGAGCTCATGAGGTTAATCTCAAATTGATGCAGTATTCACAAATGCTGAAGGGAagcaattcaattgaaattataaacggGAGCAAACATTCAGATTGCCTTTTGGAAGCCCCTATAGATATCCCGTGTATTGCAGTAGATTTtcctaaaattaaaacagaaaccGATTGTGCAGAGGAATCACTTTTCGACGCATTTCCATCAGTGCAAACTTTAGAAGACAAGGAGCCAGACGTTAGAGATAGCTTAGGTTGTAAGGAGATGAAGGAATTGTTTGATGATTTTGATGAAGAAGACGATTGCTCGCTTGCGaacattaaaaacaagaaCTCTTCTGAAAATATGCAATTAAAACGTGAAGTGAGCATTTATGGGAGCGCTCTACAAGATTCAAAAGACCCTATAAAGACTTTCCGAACCAGAAGAAGGACTAGTTTGGAAGAAAGTGATTATCAAGATGATGGTTGTAATGATACAGATAGGCAAgttaaaatTGATTGGTCAGACACTCCTCGGCAACGGCGAAAACGTTATGGAAGGAAAAATGCTAATCGGAAAGATCGTTACTCCTGTAAAGAGTGCGGTACAACATTCGCATGGAAAAAGGATCTGACACGTCATTCCTTAAGTCACGACCCAAATCCACCGCATAAGTGTATGTTTTGCGACCGTTGTTTCACGCGTAAAGATAAACTAAATGATCATACCAAAGCACATCAACGTAAAACAGAAATCCTAGGACGACGAACACAACGACATCCGGAATGGAAATTTGCTGAGCGTTTGTtctctagaaaaaaattccaaaagatTCAATGCATGTTATgtagtaataaatttgaaagcaCGCAACTCTTGCGATCACATCTTCAGAGCCATGAAGAAGAATCAACACTTCATATAATCAATTTGGAAAGCGAAGTGATTCGCATTCTATGTTCACAAAATGATCAGAACATGGATGAATTAAAAGCTCAGATTTGCCGTGATGTAAAAGCTCAGCGTTTTGGAAAATTCTATGATATTGTCAATGAACACGGTTACGAACTTAGTATAAGCGATTCAGATGGATGTGTAGATGCAGATTCTGAGGCTCCAACTAATAAATATACATGCGAGTTATGTTCTGAAACATTCTCTAGGAAATTTGCTATTTTTGAACATTTGAAAGAGAAGCATGTCGAGGACAGAATACCATACAAATGCAACGTGTGCAAAGTGGATTTTGTTAGCCGTGAAATGTTCGAAGCGCATACACGTACTCAAtgtagaaataaagaaaaaaagtatcAGTGCTTAAATTGTCCAGGCAAATTTATGtggattaaaaatttagacaATCACAATTGTTCAAATCGTTTTAGTAGCTCCGAATATAAAAATCGTGAAATTTTACAGTGTAACGATTGTGATGAAACATTTGCCAGCAGGAAAGATTTGAGGAGACACAAAGAGGCGCATGATTCTCTTGAGACGTCGCAGAAGtgcaaaatatgttttgaacGATATTTTAAGGCTGATAATTTAAGACTGCATTACAAGCAAGTTCACGCCTACTTACTACGTCGCATTGAATGCTGTTTATGCGGggaacaatttaaattaattaaacatttaagaGAACATTTACCACAACATTCCGATGGTCTTACTGGAATTAAGAATCAGAGTGCCCTCTTTTTTAAAACGTTCGCCCCTCAAATGTGTTCTAAAGAACATGGAGAATATGATACGGGACAATTGGCGGAATTAATATGCAAAGATTATGCGTTGCAAAACATGTCACGCTTTTATTTAGCCGTAGATGAAAGCGGTAATGAGCTGGATTTATTTGCTTCCGAGAGTGACCCTGAGACAGAAACAGCTAGCTGTGCTTTGCTGGAGATGGTGTACAAGtgtgaaatttgttttcaagaGTTTAATAGACGGACAAAAATTCTTCTGCATCAATATACAGAACACAAAGAATTGATAACATTGCCTCATCGTTGCGAGCATTGTGCGAGGCAATTTGTGTGCGCTGAACTGCTTCAGAATCATGTCATTACTAATTGCGGCAATGTTTACAAAAAGTGGACTTGTTCGAAATGTCCGTCGCGTTTTGTGTGGCAAGAAAACCTCGAAACTCATATTAAGATCAAGCACACAGAACCTGAGCAGCAAATCATTCGTAAATTggcaaataaattgcaatgcGATGAGTGcgataaaacatttatttggCCTAAAGATTTAAATCGTCATAGACGTTGTCACCTGCCCGATGATGAGAAGTACGAGTGTCCATTTTGCCCACGTCGTTTCAATCGAAAGGACAATATGCAGGCTCATATTAAAATTCACGGAGCTGGCGAGAATATGACAGGACCTATAAAAAGAGAATTTGTTAGGGTTGGTAAGCAACCGAGGACAAAAGCTGTTGATGAGAATTTATGCAAACCGAATGGGTGCAAAGTGATTCAGTGCATGATTTGTCTTTCAAGACATACCAAAATATCGGATCTACGCACTCATTTGCGTACGCATCAATATGTGGTCTCATTCGATCAACGAGGTGGAGATGGGGAAGATATTGGCGACATCTCCAAGCAACTTTATCCCGACGAAGAGCCAATGAAACAGGaggaaatattgataaaacgTATTATTACGGATATTACGCAACATCAATTGGACCGTTTTTATTCGATAACAAATGAAGTCggttatgaattaaatttaagcgaTTCAGAAACCGAGAGTGATTCAGATGAAGAGCGAGAGACGGCACGAAATTTATACACTTGCGATTTGTTTTTAATTATGTTTCAGTTAAAAGTCGATCGTCACGAATGTCGGGAATGTCATCGTACGTTTGCTTGGCAAAAGGATTTGAACAGACATTTGGTACAGCATCAACCCGAGGCGAAAAACTTTAGATGTTTCTGGTGTCCTCGTCGATTTTTTCGTAAAGATAAATTATATGTTCACATTAAGCGGCATGATGTGACACCTCAATGTCTGGCAGCTGCTGAAAGTTATTCTCGAGCTAGCAGCGAACCGAATGGACAGAAAGAGATTTTCTGCAAGATTTGCAATATGAGTTTCTTGACTATAACTTCGTTGCGTTCCCATATACGAGAATGTTCGTTTCAGATTGATTTATCATCTTTAGGTGATGCGCTCAAGACGGAATCACCCCAAGTGGCGCATTACAGTTACGattctttattgaattattcgattacCAATCAGCTTGGTTTCGAGTTGCATTTGGATGATTCAGAAACCGAAGGTGAGAGTGGCGTTATGCTACCCAAATCGGAATGTACTCCTCTTAAATATACCTGTGAACTTTGCGGTATGGAATTCTTTCGGAAATATGAAATTGCATGTCATCTGGTTTCAAACCATCCGAATGAAAAAATGCCtagaaaatgtgaaaaatgttGTTTCAGGACAGCGTCCAAGgaTATTTTGGATCATCATATGCGCACCCAGTGTTTTAATACAGAGAAACAGCTTGAGTGTCGCGTATGTTTGCTGAAATTTATGTGGCAGGAGAATCTCAGCCGGCATATTAAACGTTTGCATATGCGAGAAATTACACAGAAGAAACAGACGACGGGAGCAGTTGTGGGAGATGAAAACCAATCAAAATCGAAGctaaaaagatattttcaatgtgaTCTTTGTAAATGCAAATACAATCGAAAGGATCGTCTGACAGCGCACATAAAAAAAGCTCATATAAAACCTCAAGACTCGAAAAAGACCAATGTCCAATCTTCTCCTATAGATCCCATCACTGGAGAGACAATGCCAAATCCACAACTTGAGAAGAAGTTCCTGTGTGCATTTTGCGGACGCGCTGTTACTTCTTCGTCTAATCTGATAATACATATGCGCAGGCACACGGGCGAGAAGCCATTCAAATGCGACTTTTGTGATATGGCATTTCCGCGTTCATCCGATTTACAATGTCATCGTCGTACACACACTGGAGAGAAGCCGCACAAGTGTACCGTATGTGATAAAGCTTTCTCACGCTCTTACAAGCTCCAGACACATATGCGCATTCACTCTGGAGAACGTCCTTACAAATGCACCTACTGTGAAAAGAGCTTTACTCAATCGAATGACCTGACGCTTCACATAAGGCGTCACACTGGAGAACGTCCTTACGTGTGCGGAATATGTGGAGAACGGTTCATTCAAGGCACAGCATTAAAGAATCATCGTACAATACGCGGACATTTTGAAGATATAGAACCGAGAAAATTAACGACTTTGgaacaattttag
Protein Sequence: MEPDFEYLRCNAKSMCRTCYEISLHLHPLHEKTEQFPLKSLADLLFDVAQIEIKQVANDDVLPSHICGNCSRKLKNAYKFVQRAHEVNLKLMQYSQMLKGSNSIEIINGSKHSDCLLEAPIDIPCIAVDFPKIKTETDCAEESLFDAFPSVQTLEDKEPDVRDSLGCKEMKELFDDFDEEDDCSLANIKNKNSSENMQLKREVSIYGSALQDSKDPIKTFRTRRRTSLEESDYQDDGCNDTDRQVKIDWSDTPRQRRKRYGRKNANRKDRYSCKECGTTFAWKKDLTRHSLSHDPNPPHKCMFCDRCFTRKDKLNDHTKAHQRKTEILGRRTQRHPEWKFAERLFSRKKFQKIQCMLCSNKFESTQLLRSHLQSHEEESTLHIINLESEVIRILCSQNDQNMDELKAQICRDVKAQRFGKFYDIVNEHGYELSISDSDGCVDADSEAPTNKYTCELCSETFSRKFAIFEHLKEKHVEDRIPYKCNVCKVDFVSREMFEAHTRTQCRNKEKKYQCLNCPGKFMWIKNLDNHNCSNRFSSSEYKNREILQCNDCDETFASRKDLRRHKEAHDSLETSQKCKICFERYFKADNLRLHYKQVHAYLLRRIECCLCGEQFKLIKHLREHLPQHSDGLTGIKNQSALFFKTFAPQMCSKEHGEYDTGQLAELICKDYALQNMSRFYLAVDESGNELDLFASESDPETETASCALLEMVYKCEICFQEFNRRTKILLHQYTEHKELITLPHRCEHCARQFVCAELLQNHVITNCGNVYKKWTCSKCPSRFVWQENLETHIKIKHTEPEQQIIRKLANKLQCDECDKTFIWPKDLNRHRRCHLPDDEKYECPFCPRRFNRKDNMQAHIKIHGAGENMTGPIKREFVRVGKQPRTKAVDENLCKPNGCKVIQCMICLSRHTKISDLRTHLRTHQYVVSFDQRGGDGEDIGDISKQLYPDEEPMKQEEILIKRIITDITQHQLDRFYSITNEVGYELNLSDSETESDSDEERETARNLYTCDLFLIMFQLKVDRHECRECHRTFAWQKDLNRHLVQHQPEAKNFRCFWCPRRFFRKDKLYVHIKRHDVTPQCLAAAESYSRASSEPNGQKEIFCKICNMSFLTITSLRSHIRECSFQIDLSSLGDALKTESPQVAHYSYDSLLNYSITNQLGFELHLDDSETEGESGVMLPKSECTPLKYTCELCGMEFFRKYEIACHLVSNHPNEKMPRKCEKCCFRTASKDILDHHMRTQCFNTEKQLECRVCLLKFMWQENLSRHIKRLHMREITQKKQTTGAVVGDENQSKSKLKRYFQCDLCKCKYNRKDRLTAHIKKAHIKPQDSKKTNVQSSPIDPITGETMPNPQLEKKFLCAFCGRAVTSSSNLIIHMRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGEKPHKCTVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGERFIQGTALKNHRTIRGHFEDIEPRKLTTLEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -