Pruf016448.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Physocephala rufipes
Gene Symbol
-
Assembly
GCA_963966595.1
Location
OZ016504.1:18373923-18376876[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.9e-05 0.0087 16.9 1.8 1 23 208 230 208 230 0.91
2 16 0.00021 0.021 15.7 1.0 1 23 236 258 236 258 0.97
3 16 3.4e-06 0.00033 21.3 0.8 1 23 273 295 273 295 0.99
4 16 2.9e-05 0.0029 18.4 0.7 1 23 304 326 304 326 0.97
5 16 1.8e-05 0.0018 19.0 0.5 1 23 479 501 479 501 0.94
6 16 0.0039 0.38 11.7 1.9 1 23 507 529 507 529 0.94
7 16 3.3e-06 0.00033 21.3 0.5 1 23 546 568 546 568 0.99
8 16 0.00028 0.027 15.3 0.8 1 23 577 599 577 599 0.98
9 16 1.4e-05 0.0013 19.4 2.5 1 23 606 628 606 628 0.98
10 16 2.1e-06 0.0002 22.0 1.3 1 23 634 656 634 656 0.98
11 16 1.1e-05 0.0011 19.7 1.8 3 23 664 684 663 684 0.98
12 16 0.0031 0.31 12.0 1.5 1 23 690 712 690 712 0.99
13 16 4.6e-06 0.00045 20.9 2.1 1 23 718 740 718 740 0.97
14 16 0.00022 0.022 15.6 3.9 1 23 746 768 746 768 0.99
15 16 8e-06 0.00079 20.1 0.5 1 23 774 796 774 796 0.98
16 16 3.7e-06 0.00037 21.2 0.9 1 23 802 824 802 824 0.99

Sequence Information

Coding Sequence
ATGGACACGATAGGAAATTCATCATATCAAATTTGCCGCACCTGCATGATTCAAGATCAAAGTCTCCTCTCAATTTTTGAATGTTCTGATACTCCTTTGAGCATATATGAAATGTTGACGACTACAATACCTCAATTGCAAACCCTTAACGAAGATAATCTTCCGCAGCAAATCTGCGCTGCATgcattaacaaattaaatatagcTTATGAATTCCATCAAATGTGCATTAATTCGGAAAAGAAGCTGCGCAGTGCACTAAGGGGATTCTCGAGTTCTGACGCAATTTGTTCGGAAGTGGATCCCTTGATGGGGGAAGTAAAGACATGTCTGAAATTTGAAGACGTAAACGACCGAGAATACGAAGATCAAAAGGAACACCGCAGTACTAATGACCCTCCAAATGGAAATAGCACTTTGGATAGCATTTCTTCCATATTAGATAGTCAGGCAAACGAACATGAGGAAAGatCTAAAGATTTTGAAGATATACCACTAATGATGCTTCAAACTCAATGGAAGTATGAAGAGATGACTGAAGAATGTTGCTCTAGTGTACACAAGGAATCTGAAAGGAATGAGATTGAAAAACCAGACTCAAAAAATCGTCGTAAAGGTAAATTTCCTTGCCCGCATTGCAAAAAGATATTTGACCGTCCGTACCGCTTAAAACGCCACTCAGTTTTACATTCACCCGCGCGACCATTTCCATGTGGCCTCTGTTCCTATCGATTTTCAACACTCAGCCAAATGACGAAACACAAACTTATTCATGAAGAAACCACAAAGTTGCCAAGTGTTCCTCCTCCGGAAGGCTACCAATGCAAAGAATGTCCACGACGCTTTGAGAAGCGTGAATCTCTATCTGCTCATATTCAAAGACATCGTAATAGTAAACAATTGCATTCGTTTAAATGCAATTTGTGCCCTAAAAAATATAGTAATGTTGGTAGCCTAACTAGGCATGCGGAAAAGCATCTTAGAAGTCACAAAATATCAAACTGCTCACGATGCACAAAACCAGTTCATAGAAATATTCGGTTAACGCAGGAGCACAATAATACAGAGGAAAGTTCTATTTTCGACGTTTGCAGTTGCGATTTGACGTTTGCAGTTTCACATGCCCTTGAGAAGCTTGAAGAAAGTGCTGAAGTAAGGAGTGGAGATCACGGAAGTGCAGAGCCTGATTTTGTTGAGCATGGAAAAACAGAGGAAACAAGTAAGGAGCCAGAAACTACAGAAAACTTACTTGGAAAGAGATTAGATAATGATGCTTCAAACTCAGATACTCTGCGAAATGAAAATGGCGCAAGGAATTTGGAGTTATCCTCAAACCGCATTCAAACCCGACGATTGTTTAAAGCGATAACGGAAGCCAACGCTGAATTAACTGAgattgaaaagccaaatttaaaaaatcgtcgCAAAGGAAGATTTCCTTGTCCAGATTGCAAGAAGATATTCGATCGTCCTTATCGTTTAAAGCGTCACGCCACTTTACACTCACCTTCACGGCCTTTTCTGTGTGTTTACTGCAATTATCGCTTTTTCACAATCACCCAACTTACAAAACATAAACTTATTCATGAAGAAACAGCACAATTACCGCAGAGTCGCCCCGCTCCTCCTGAAGGCTATCAATGCAATGAGTGCCCACGTCGCTTTGAAAAACGCGAATCTCTGTCGGCGCATATCCAGAGTCATCGAAAACATAACCCAATCCACATGTTCGAATGCGATGCTTGCTCCAAGAAGTATCGTAATATCAGTAGTCTAGCTAGACACTTATCCAAGCATCCTGataatcaacaacaatttcgGTGCAAAGTCTGTAACGAGACATTCAGAACGGATTCCCAATTTAGTGAACACATGAATAAGCACAACACTGTAGAGCCGTTTGTGTGTGTTCACTGTAATAAAGCATTTTCCAAGGCTGGCAAACTTGAGGAACATCAGCGTACTCATACCGGTGAAAAGTCCTTGTTATGTCCTCAATGTGGTAAATCTTTTCATAGTGCCAGCAACATGCGTCAACATCTATTGCGTCATTCCGGCGAAAAACGCTACCAGTGTCCCGAATGCCCGAGCAGATTTGCCTGCCAATCCGACCGAATCAAACACATGTCGACACATCGTGCCGTAAAACCTCATGTTTGCGACATCTGTGGATCGAGCTTCACTCGCTCGTATTCATTGaccaaacacaaaaacatTCACACTGGCGTTCGACCATACAAATGCGAGGAATGTCAAATGAcCTTTGTTTTCGTTGAGCATATGCGTCGGCACAAACGAACGCATACCGGCGAAAAACCATACGCATGCAAATTTTGTGATCGCGCTTATAGCGAAAGTGGcgatttgaataaacatttgcGATCGCATATGGGTGAAAAGATCTATAAATGCGATCAATGTCCAGAGGCCTTCAAATACCAGCAGGAATTACGCGAACATCAGCGTCAGCACTTCAAACAGCAAAAACTGCAGGAAGAAGCAAATTTGTTAATGTTAAAGAAGAAAAGTCATAggtga
Protein Sequence
MDTIGNSSYQICRTCMIQDQSLLSIFECSDTPLSIYEMLTTTIPQLQTLNEDNLPQQICAACINKLNIAYEFHQMCINSEKKLRSALRGFSSSDAICSEVDPLMGEVKTCLKFEDVNDREYEDQKEHRSTNDPPNGNSTLDSISSILDSQANEHEERSKDFEDIPLMMLQTQWKYEEMTEECCSSVHKESERNEIEKPDSKNRRKGKFPCPHCKKIFDRPYRLKRHSVLHSPARPFPCGLCSYRFSTLSQMTKHKLIHEETTKLPSVPPPEGYQCKECPRRFEKRESLSAHIQRHRNSKQLHSFKCNLCPKKYSNVGSLTRHAEKHLRSHKISNCSRCTKPVHRNIRLTQEHNNTEESSIFDVCSCDLTFAVSHALEKLEESAEVRSGDHGSAEPDFVEHGKTEETSKEPETTENLLGKRLDNDASNSDTLRNENGARNLELSSNRIQTRRLFKAITEANAELTEIEKPNLKNRRKGRFPCPDCKKIFDRPYRLKRHATLHSPSRPFLCVYCNYRFFTITQLTKHKLIHEETAQLPQSRPAPPEGYQCNECPRRFEKRESLSAHIQSHRKHNPIHMFECDACSKKYRNISSLARHLSKHPDNQQQFRCKVCNETFRTDSQFSEHMNKHNTVEPFVCVHCNKAFSKAGKLEEHQRTHTGEKSLLCPQCGKSFHSASNMRQHLLRHSGEKRYQCPECPSRFACQSDRIKHMSTHRAVKPHVCDICGSSFTRSYSLTKHKNIHTGVRPYKCEECQMTFVFVEHMRRHKRTHTGEKPYACKFCDRAYSESGDLNKHLRSHMGEKIYKCDQCPEAFKYQQELREHQRQHFKQQKLQEEANLLMLKKKSHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-