Pruf013096.2
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- bab1
- Assembly
- GCA_963966595.1
- Location
- OZ016503.1:26947729-26949697[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 3.2e-14 52.8 0.0 1 43 55 98 55 100 0.95 2 2 1.4 3.8e+03 -1.9 1.3 2 24 191 216 190 218 0.73
Sequence Information
- Coding Sequence
- ATGTTAGAGAACTCACACGCGTGGATGGGCGCCTCCTCGTCTTCAATAGCAGCAGATAGCTACCAGTATCAATTACAGTCAATGTGGCAAAAGTGCTGGAACACCAACCAGAACCTCATGCACCATCTTCGTTTTCGAGAACGCGGCCCTCTGAAGTCTTGGCGTCCCGAAACCATGGCGGAGGCTATCTTCAGCGTACTCAAAGAGGGTCTTTCACTATCACAGGCCGCGCGTAAGTACGATATTCCGTATCCAACATTTGTGCTATACGCAAACCGTGTGCACAATATGTTGGGACCGTCCATAGATGGTGGTCCGGATCTGCGGCCCAAAGGACGCGGGCGTCCCCAACGTATTCTCTTGGGTATCTGGCCGGACGAGCATATAAAGGGAGTCATAAAAACTGTAGTTTTTCGCGACGCTAAAGATTTGAAGGAAGAGGCTCTGATCCATTTGCCCTATGGCAGGCATTCTCCTGTATTTCCTTATCAAGAGGGGCATTTGGGTTACGCCGGCGTAGGAGGAGCATGTCCTAACGGAATGCCGACACCCACAAGTGATCAAATGTCCCCGGAAGCTACTGTTGCAGCTGTGGCCGCCGTTGCACACAATCTACGGCAGCAGATGCAAATTGCAGCTGCCGCTCAACAACATCCACATCCACACCAACACCAACTCCAACAACATCAGCATTCTGAGGGAACCCCTAGTTCCAACTTATATAGCTTACCGCCACATCTCCAACCGCATGTAGCCACTGCGACTGCTACCGGTGGACCGCTGCCCGTACCGAAATCTAACATCTCACCTGCACCGGGCATCAACACAAACCCATCGGCTGCAGCCATGCTAGCTGCGAGGCACGTGCAATCTCCCTGCGGCCCAAATCTGCCCGGCCTTACCAGTCTTCCACCGAGCATGGCTGCTGCCCTTCACATGACGGGAGGGCCACTGGCGCGTCCAGAAGGTGGTCAAACAGCGACTATGTTAAgccagcatcaacaacagcaacaatatcaacatttgcaactgcaacagcaacaacaacaacagcaagcattgcaacaacagcagcaacaacaacagcaatcattgcaacaacagcagcaacaacaccaacaacatcaacatcaacaactccaacagcaacaaaaccaacagcaccagcagcaacaacatcaacaacaacaacagcagcagcaacaacatcaacaacaccaaaaccaacagcaacaacagcaccaacatcaacaacagcaccaacagcagcaacaacaccaacagcaacaacaacaccaacagcagcaacacaaTCCCTCGACACACTTAGTGTTTCCACACCCATCAGTAACGTCGCCCTTACAACGCCTTCAACAGCAATCCGGAAATCCTTCCGTACGCCCCTCACTACCCACTACTCCAATTTCTGCGCTAGAGGCCGCGAAGCAACCAAAACTCACCACTCATAGCGAACATCGTCAGGCCAGTCCTTCCAGCGTGAGGCCTTTACCTTCGCCGCTAACGAACATGGGATTAGAGCCGGCTCTATCTGTCGGGCTTAGCGGCATGACGTACAAACCAGCACGTGGTTACTCACCACCACGCCCAGAAAACCTTTTTCAAGAAGACATTGCCGATTTGGTAGGCGGCGGAGTAGCAACAAGTATTAGGACAACCGCAACATCTAATGCTACATCTACCGCAACAACAGGCGACTGTTCGATAACCAACGCCACTTCTTCCTCCACCAATTCACTAGCAGTAGCAGTAACTGCAGCGAGTGTCGAGGACCCAACCGCTAATACTATTAAAATCGAACCGGTAACATTAGGTCTTGAATGA
- Protein Sequence
- MLENSHAWMGASSSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDLKEEALIHLPYGRHSPVFPYQEGHLGYAGVGGACPNGMPTPTSDQMSPEATVAAVAAVAHNLRQQMQIAAAAQQHPHPHQHQLQQHQHSEGTPSSNLYSLPPHLQPHVATATATGGPLPVPKSNISPAPGINTNPSAAAMLAARHVQSPCGPNLPGLTSLPPSMAAALHMTGGPLARPEGGQTATMLSQHQQQQQYQHLQLQQQQQQQQALQQQQQQQQQSLQQQQQQHQQHQHQQLQQQQNQQHQQQQHQQQQQQQQQHQQHQNQQQQQHQHQQQHQQQQQHQQQQQHQQQQHNPSTHLVFPHPSVTSPLQRLQQQSGNPSVRPSLPTTPISALEAAKQPKLTTHSEHRQASPSSVRPLPSPLTNMGLEPALSVGLSGMTYKPARGYSPPRPENLFQEDIADLVGGGVATSIRTTATSNATSTATTGDCSITNATSSSTNSLAVAVTAASVEDPTANTIKIEPVTLGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -