Pruf021062.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Physocephala rufipes
Gene Symbol
lov
Assembly
GCA_963966595.1
Location
OZ016505.1:28984072-29000329[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3e-18 7.9e-15 54.7 0.0 1 44 847 890 847 891 0.96

Sequence Information

Coding Sequence
atGTTGAAAGATTCCGAGGCAGTGGTTAAAAGGCGCAAGTTGTTGTTCTCGGCTACGACTCCTCCAACAACACCGCCCACCCCGCCACCACTGAATATGATCATGAGAATGACGACACCGACCCCAACAAAGGGTTCACTAGCAGCGAATACAGCCTCAACGACCGTTCTAAGGCACAACATGACTCCCGCGCCACCCACTTCCTCGCTAACGTTCTCAACTCTGGCGGCAACGCCTTTGATGAGCGCTAGCATTAACgacttaacaacaacaacagtaacgtcatcagcagcaacaacgatAAGCGTATCATCACCACAGGCGACACCTTCACATGCAGCTGTCCCTTCAAATGCCGCCATTACTACTGCATCCGCTAATGTGCAGGACCATTACAGTCTTCGCTGGAACAATCATCAGAATCATATCCTGCGAGCGTTTGATGCACTTTTGCAAACGAAAACATTAGTTGATGTGACTCTCGTTAGTGCAGAGACGAGTATACGAGCTCACAAAATGGTGCTCTCGGCTTGTTCGCCCTTTTTCCAACGCGTCTTCGCCGAGACACCCTGTAAGCATCCGGTCATTGTTCTGAAAGACTTTCGAGGGTGGGTGGTGCAAGCAATTGTTGATTTCATGTACCGTGGCGAAATTAGTGTCACGCAAGAACGTTTGCAAACCTTGATTCAAGCAGGAGAATCTCTGCAAGTGCGTGGTTTGGTGGAGAGCTCTGTACCCGAACATGCACCGACACCAGCTGCCTCGCCAGATGCCTATGGTGTGATCGACACCTCGCTAATGTCTTCAGAACATGAGCGGTGCTTGAGTTTCGACGATGAAACACCGTCGATGGTGACGGCGACCTCAAAAATTATCTTACCCTCGCGCCTTTTTGGTACATCTTCACGATGCGAAAGAGATCGCAAGCTTAAAAGGGAGGCTGACGGCAAAACGGAATGTGAACCGGAGCTGACGTCTGAGATCGACGTTCACAACGAACTTAATTCACATCCTGAATTATGTACGTCGCCAATGCCGCGCCGCAAACAGGCTCGACCACGACGCCGATCAGGAGAGTTATTACAGGAGGCAGCAATCAAAACTCCAGTAACGACTGCTCGTACACAAGAGACTCTTGAAAAAATTACTCCAGATAGAAATCTACCACTTCAGGAAACTCTTCCTGTAGCTGCGATTAAACAGGAAGTAACGGATCCCACTGATCAGAAGGTCCAACTTGAACAGTTGGATGCACAAAACTCGGACCACAAGAAGCTTTTCCCTGAACATGAAAAAGTCAGCAACCTGCAAAGCTTTCAACAAATTCAACAACAGGATGTCCAACCGGCAAATTTGCGGAAGGAACTTCAAGGTAGCGAACACTCGGAACCCTCCGATCAACAAACACCTATGCAAATGTCCGTGGAAAATGAGCCTGATGAATTTGACGACGACGAACATGAAAGTGAGCAGGAAGACATTGAGGAGCTTATTAAATGCACAAACGAACTTGAGCGCAAATCAATTTCTGCGCAATCCGATGGTCCTGAAGACCTTTGCACCACGAACAAATGCAACGGCCGTTCTTTAAATCAATCGCCTCCCAAACAAGAAACGAGCCCGTcaagtaacaataataataatagtaaactaaacaacaataacaacaacaaccgtaTAGTGCTTTCCTTGAAGGATATACGGCACCTGAACAAACCTTCATCGGTTGGCAACTTTAGCGGACGTCATTCATCAACACCCACTACAATCAGCGGGATTCATCCTTTTGCGTCAACATCCCTGCGTGATCTACGGCTCGATCGCTCTGtcccaaacaacaacaatgcgaTCACTGAAAACCAATGCAATATTGAAGCGTTGGAAGCACAAATGCAAGCGGCTGCAGCGGCGGCTGCAGCAGCGGCAGCTGCCAATGGTGAAAATCCATTCCAAGCTATCGAACACCAGATGGATCTTTCGTtcgcagcagcagcggcggccgCTGCCGTATCACACCAACACAATCGTGAACGTGACGAGCAGATGCAACGAGAACAACGCgaattacaacaacatcataATGCTTATGCGAACAGTTTACTTGGGCAAATTGGTATGCCCAGCATGCCGCCTTTCGGTCCATCATCACGCGGTCCTCCGGGTGCGCCACCAGCCGCGTCAGCGCATGAGAGCCTCGAGGAAAGTATGAATCGACTAAGTAAAGAATTCGCCCCAAGCTCACCGATGAGCTTGCCGAGTCATTTCAATCATCCCGATGGTCCACCACACCCGCCTTCACCATTGCCATTTCCGGGCATGTCATCGGCATTAGCGCTGACGCCGCCACACATGTTTGGTCTCGATTCACCACTTGGTTTATTTCCGCCTGGTATCGATCCTGGTAAGCTTTACAACCCGCTCATGGAAATGTCCGATCCTCGTGGGATGGGTGGCGAGCCGCagccatttttgaaaaagaaaaTGCCACGCCCCAAGGGTCAACATTCAGCTCCGCGTGGTGGGCCACCACGCTCCTGGACCAATGCTGAGCTCACGGAGGCGCTTCAGCATGTTTGGAACAAAAAAATGACTACCTCACAGGCTTCGCGCATTTTCGGCATTCCCTACAATTCGTTGCTAATGTACGTGCGCGGCAAATACGGCAAGAGCTTAAAGCTAGAACAGCTTCGGAAAGATTGCATTAGTGGTCCTCCAATTGAGTTGCTGCAAATGGGTATAAGTTCTTCGTCGGGTGGTGgtaaaaccaacaaaaccaGTGGCGGTTCTGGTGGTGGAAATAGTTCCGGAGCTGGTGGGGGTGGTGGCGGAAGCGGTGGGGCCGGCAATAGCGGCGGCTCGATTAATAACACTTCGGGTATGGGCCCAACCGCTGAAGAACATCGTGATCGTGAGCAGCGCCACGATCAACGaaaaggacaacaacaacaacaacagcatcaccaccaccaccatcaacagcagcagcaacaacaacaaccgcaccACCAGCAGGATTTAATGGAACAACTGCAATCACATCATCAATCACAGCCACCGTCGCTCCCGCTGGGCAGCATGTCCGAATTGGAACTCGGTGCACCAGGATGCCTTGGTCAGGGTCCTCTCGCAGGCGGTGGGCCCGGAAGCGGCAGCTCGGATCCCACCGATATCTTCGGAGGTCCGAATGCTCTCTTCAACCCATTCCCGCCTGGTTTCTATCCCGATTTTCCTGGTGGCTTCCCCGGTCTACCGCTGAGCATGTTGAATCTGCTGCCGCCCACGGACAGACATCAACAGGCGGCTGCAGCGGCGGCAGCCATGCATCACATGTCACTGGAAGAAGATTGTAAGTCCGATCGCTCCAAGCAGTCTTCCTCGATGGACGACGAAGGATTCGGTGCTCTAACAGCGCCAACGACACAACAACCTCTGGCATTGAATCGCGATATGTCTACAGTGGCGATGGTTGGTAGTAGTGGTGCATGTTTGGCGCAATCGAATGGCGGGACGCAAGATTGA
Protein Sequence
MLKDSEAVVKRRKLLFSATTPPTTPPTPPPLNMIMRMTTPTPTKGSLAANTASTTVLRHNMTPAPPTSSLTFSTLAATPLMSASINDLTTTTVTSSAATTISVSSPQATPSHAAVPSNAAITTASANVQDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLVSAETSIRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGEISVTQERLQTLIQAGESLQVRGLVESSVPEHAPTPAASPDAYGVIDTSLMSSEHERCLSFDDETPSMVTATSKIILPSRLFGTSSRCERDRKLKREADGKTECEPELTSEIDVHNELNSHPELCTSPMPRRKQARPRRRSGELLQEAAIKTPVTTARTQETLEKITPDRNLPLQETLPVAAIKQEVTDPTDQKVQLEQLDAQNSDHKKLFPEHEKVSNLQSFQQIQQQDVQPANLRKELQGSEHSEPSDQQTPMQMSVENEPDEFDDDEHESEQEDIEELIKCTNELERKSISAQSDGPEDLCTTNKCNGRSLNQSPPKQETSPSSNNNNNSKLNNNNNNNRIVLSLKDIRHLNKPSSVGNFSGRHSSTPTTISGIHPFASTSLRDLRLDRSVPNNNNAITENQCNIEALEAQMQAAAAAAAAAAAANGENPFQAIEHQMDLSFAAAAAAAAVSHQHNRERDEQMQREQRELQQHHNAYANSLLGQIGMPSMPPFGPSSRGPPGAPPAASAHESLEESMNRLSKEFAPSSPMSLPSHFNHPDGPPHPPSPLPFPGMSSALALTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRGMGGEPQPFLKKKMPRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIELLQMGISSSSGGGKTNKTSGGSGGGNSSGAGGGGGGSGGAGNSGGSINNTSGMGPTAEEHRDREQRHDQRKGQQQQQQHHHHHHQQQQQQQQPHHQQDLMEQLQSHHQSQPPSLPLGSMSELELGAPGCLGQGPLAGGGPGSGSSDPTDIFGGPNALFNPFPPGFYPDFPGGFPGLPLSMLNLLPPTDRHQQAAAAAAAMHHMSLEEDCKSDRSKQSSSMDDEGFGALTAPTTQQPLALNRDMSTVAMVGSSGACLAQSNGGTQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01200993;
90% Identity
iTF_01200993;
80% Identity
iTF_01200993;