Pruf012704.1
Basic Information
- Insect
- Physocephala rufipes
- Gene Symbol
- -
- Assembly
- GCA_963966595.1
- Location
- OZ016503.1:22585116-22586620[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-15 2.9e-12 46.5 0.0 2 44 307 349 306 350 0.96 2 3 0.0049 13 6.0 0.0 27 37 379 389 358 395 0.84 3 3 2.9e-14 7.6e-11 42.0 0.0 3 42 417 454 415 457 0.84
Sequence Information
- Coding Sequence
- ATGAATCACTTAAAATGGATGGGACACCAGTCTACCATTTACGATATACAAAAGAACCTACGCGGTGACCCGCAGAGCTGTGAAGTGACGCTGGTTGGTCGGGGTAAATCGGTACGTGCGCATCGTTTTGTATTGGCTTCTTGCAGCGATCTATTACGCGGCCTATTGGTCGATGTACCAGTGGGACAGGAGTGCACCATAATGGTACCCGATATAAAAGGAGCGCTACTGGATAGCGTGCTAGCTTTCATATACATTGGCGAAACGTACCTCAATTCGAACAATTTGTCTGAGTTCTTGGAAGCAATTAATCATTTGGGTATTAAGTCAGCAATAAGTTTTGAATGCAATACCGGAGTGTTATCTTCAAGTGAACAGTGTTCACCGAAACCGGTCGGAGGAATCATGCACTTACAGCAAGATGAAATCATTGAGGAGGAACAAGTTATTGCCTCACCCAAGATGGAGGAACAAAATGTTCTTGATTGCACCGATCAACAGACTTCGAGGGAATTGGAATTTCTCGATGTTTACAATGAGCCTGAGCAAAAAATAACGTACTCGATAGAACATATGGCTGCTGCGACTgccaatgaatttattttaactgaAGCTTCAGGAACATTTACATTGACGCAAAATGCAAAGATGGAGAATTCGGATGGTGTGGACAAAGTAGATGTTCAAAATGATGACGATGCCGGTGATGATACAGGGCACATAATGGAACATTTCTCCACAACTACCAGCACTAGTGCTATTATTCCAACAGAGCCAATGATTGAACTTGGCAATGTGAATGAAGTAAATAACGATCAGTCAGTTGATACTTCACACAAtacatttgttaaattaaagaaaattgataaacataGCCAAAGCTCCCAAATGAATATGATAACCGATAATCAGATGCGTGATGAAAGTCTCGAATTAGCAGTCCAGGGAGTTCTTAATGAAGGCTTGAGTTTACAGAAGGCCGCCCAGAAATACCACATATCTAAAACGGTCCTATGGCGACGAGTACGTAAACATCCCATGTATATGAAGACATCGCGAGAAAATCCAATGATTGAAGCAGCATGTAACCGTTTACGAAATGGAGAATCTCTTAAAGTTATTAGTCAAGCTCTCGATATACCAATGTCCACACTGCACCGGCATAAAGTACGTTTAGCACAACAGGGTCGACTACCAGATTATATTTCGTTCAAAAAACGTGGTTCTCTTTCGAAAGAGcaattaaaagagaaacttGCGAAGGCTGTTCACTTGCACGAAGGCATGTCTCAAAATCATGCAGCTAACACTTACGACATACCCAAAAGCACACTATGGCGACATCTTCAAAAGCGCATGAGCGAAGCACAAATGCAAGGTTTATTGGATGAAGAGGATGGTATtaaggaagaaattattttatcatga
- Protein Sequence
- MNHLKWMGHQSTIYDIQKNLRGDPQSCEVTLVGRGKSVRAHRFVLASCSDLLRGLLVDVPVGQECTIMVPDIKGALLDSVLAFIYIGETYLNSNNLSEFLEAINHLGIKSAISFECNTGVLSSSEQCSPKPVGGIMHLQQDEIIEEEQVIASPKMEEQNVLDCTDQQTSRELEFLDVYNEPEQKITYSIEHMAAATANEFILTEASGTFTLTQNAKMENSDGVDKVDVQNDDDAGDDTGHIMEHFSTTTSTSAIIPTEPMIELGNVNEVNNDQSVDTSHNTFVKLKKIDKHSQSSQMNMITDNQMRDESLELAVQGVLNEGLSLQKAAQKYHISKTVLWRRVRKHPMYMKTSRENPMIEAACNRLRNGESLKVISQALDIPMSTLHRHKVRLAQQGRLPDYISFKKRGSLSKEQLKEKLAKAVHLHEGMSQNHAANTYDIPKSTLWRHLQKRMSEAQMQGLLDEEDGIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01201009; iTF_00366426; iTF_00366626;
- 90% Identity
- iTF_01201009;
- 80% Identity
- iTF_01201009;