Pate017319.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720667.1:5902512-5910152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00021 0.021 15.6 0.7 2 23 1236 1257 1235 1257 0.96 2 17 0.01 1.1 10.3 7.0 1 23 1296 1319 1296 1319 0.95 3 17 0.028 2.9 8.9 1.1 2 23 1343 1364 1342 1364 0.96 4 17 0.3 31 5.7 2.0 2 21 1457 1476 1456 1477 0.93 5 17 0.0065 0.68 10.9 0.7 1 21 1593 1613 1593 1614 0.95 6 17 0.00066 0.07 14.0 0.2 3 23 1640 1660 1638 1660 0.95 7 17 0.13 14 6.8 3.1 2 23 1679 1700 1678 1700 0.96 8 17 0.25 26 5.9 0.5 1 23 1707 1729 1707 1729 0.91 9 17 0.2 21 6.2 0.7 1 23 1748 1770 1748 1770 0.97 10 17 0.017 1.8 9.6 1.7 1 23 1797 1819 1797 1819 0.97 11 17 0.032 3.4 8.7 1.7 1 22 1895 1916 1895 1916 0.95 12 17 7.7 8.1e+02 1.3 0.7 1 23 1929 1952 1929 1952 0.88 13 17 4.7 4.9e+02 1.9 2.0 1 23 2354 2377 2354 2377 0.93 14 17 5.8 6e+02 1.6 0.3 1 20 2390 2410 2390 2412 0.85 15 17 0.00071 0.074 14.0 1.7 2 23 2437 2459 2436 2459 0.95 16 17 0.007 0.73 10.8 1.4 1 23 2479 2502 2479 2502 0.97 17 17 0.023 2.5 9.2 0.4 1 23 2519 2541 2519 2541 0.99
Sequence Information
- Coding Sequence
- ATGGCGTTGCCACAGCACAAATCGAAAACTTCTAAAGGTAAAAATTGCGAGAATATGGATATCAGAAATGATCACGACAGCCTAAACGCATCGGAGCCTAATGGAAACTCGCTTAATTTTGTGAGTAATGGAATCGCCAACGACGACAATGTAGAAGATGAAGATTCTCGTAAATATAATGCTGCAGTCAACATTGCATCCTGTAAACCGTGTTCAGTAATACTTCAACGTTTATCTGAAGAAGAAGTGCGTATTTTATCGTCGAAGAATAACTTGAGGGTTAAAAATGTTAGAAAGAGAACACGGTTTTCAAGTAAGTCGAAACGTCGTAATAATATAAGAGCcattgatcgaaaattcccaTCTTCTGGAGACCGAACAAGTGGTAATAATTCAAAATACACtgcgaaaaataaattgaagaatcTCAGAACTCGAAAGAAACGTGAAGAAGTAGAACACAGCGATCATTCAGGTCAAACTATTCAGTTGATTAGCGAGCATAACCTAAGCTGTTCTAATCAGATTTTTCATAACAAACCTGGTACTCCATCAAGTGAGGAAAAATTTAGCTCTGATAAATTGATCCAGAATCGAGCTAGCAGAAAAGATCCCCGTAATACAACCTCAAAGGTTAAAGATGGAAATGAACCTGCATCTTCAGATACTGAAAGTTTTTCACAGCAGGGCTCAGAGAGCAGAGTGACACGACAAAAATCTTCTAGTCTTTcactgaaaacaaaaattactgATATAAAAGACGATGACGATTGTCCGAGACAAGATGCTCACACTAATATCTTGGCAAGTGATAATTCAGAGGAGCTTACAGAcactgataataatattgacgGATCCGATCGTACGATATCACTGCTAAAACGGTTGAAGTTTATGTTTGAAGACAGTCTCAATAGATTTACAGACGAAAAATCGTCTCTGCAAAAGCCTTCTATTGAAACCTTCCAAACCAAAGATGCCGTTGAAATCGAACGTAGCTGTTCCAGCTCTACCGACTCTGGAACTAAAGTAGCACCAGCGAAACGGTTCAGGCTTTCACTCAAGACGAAACACGTTACAAAGAAGGGCGGTGCTAGGAGACAAGACCCTTCCGATGAAATTTTACAGAGCAAAGATTCTAATGAAACTTCTAAAAGTATTACAGCAGGATCAAATCATGGCAAGCGTATGATCAAGAGGAAGCTAGAAGATGCTAACGGCGTTGGAGCACTTGTTCCTGAGATAaaaaaatctagaaaaaatTTGACGAGAAATGATAGTGGTGAACCACAAAAGCTCCATTCACTTTCGAATAAATCAAGCGTATCTACAGAACCGAATCGAACAGATGCACTCAAAGGCTCACAATTAGTTGGTAATGGCGGttcaaaagagaaaagaaaacacagaGCTGGAAAGGTTGCGCAAGTTGTTAAGAGTTTGAGCATTCCAGTTGTAAGATTAGACAAGATGGCAAATCCCACTACATCTAAACAAATTGATAATGCTAAGGCTTTAGATTGTTCTATAGATATGAATGTAGACAAACTGGCGCCGGAAAAGGAAAATTTTGACACAAAAGAAATTGTAGGTAGTAGTTGTTTCAATAGAACTAGAGATACTAAAATCACAGACTACTTCATTAAAGTTGATAGAAGCAGCATCGTTTCAGtaaatgataataagaataatgaaaatctcgATCAACTCGAACATTTGacacaaaaacagaaatacggTATTAGCAAAGCCGCAGCTGTCTTATtaattgatttcaataatttgaaaatacctGGGCCAAAATATTTGGCTTctcaaattgaagaattaaCTCTGGAATACGCTAACTCATTTCCTGatatcaattttataaatacaaaaacaaatacGCTTCCTTCATCTTCAGTCTCCCGTAGTATTAATCTGCCAActattttgaatgaaataatggCAAATGATATCCAATCTTCTATCGATATCACTCATTCACCGTCCATCCATGATAATACCGACAAACCTTCTCATGATTCATTGCAAACCCATTCAGTTCCCATTTCGAAGAAGGCATCACCCGACAGTCACAAATCCCCAAACGTGATAAAACATACCCCAGTTAAAAGTACAAATGATGTAACGAATCGTGAACAATCGTTCACCGAGTTCCCAAATTTATTGTCAGTCCATTACCGTGTGGATGAAGCTGATCGCGGTTCATTACAAACTGACACAGTTCCAATCAGAGACAAGCTATCGCGTACAAGTCCCAAATCACCGCGTGTGAACGACCATACACTAGTTGAGAAGACACAAGTATCATTGGACGATAATTTAAGAAGCCGTACACCCAGATCAGGAAAAGATAGAGAATTACCGAACAGTACTGAACGGCCAAAAGATTGTTTAGCTGTTAATGAAGATTCAGCTGCCGATCAAGAAATTCCTGACAAACATTTGTCTtgtgaaaaatcgtttgattTAAGGGATAAACCTCAATCCTCAGTTACAAAGGTCAACCAACTTGGACATCATTTATCAGACCGTCAGACTGGGAACGATATGAAAGGGTCATTGAGAAAACCGAATTCACACGTGAGAAAATTAGTTCTTTCACCAAAAAAACGCGCTGACTTAGTCAACGATGAAATAGAGTTACGTGAATCGCAGTTGCATGTGTCAGACAAGGTTAACGAATCACCTGAAACTAATGAACCACTAAAAAGCAGTGACCACATCACACACACAGATATTTCGGAAGCTTCGCCGCAAAGTAATAAACTAAAAGCCGAAGTAAATGCTGCCTCAGTTAATGATCCAAATTCGAAAACCGCCATGGATCAGCCAGATACGTGTCCAATTCTTCCAACTATAGTTAAATCTCCAATAAAAGTgggcaatttgaaaattccttTGCAACATGGCAAGTCAAGGCGTCTTCCTGTAAATAGCATGACAATTTTGAGCCGTGAGATGTTCGAAGAACAGAGCTCGTGGATGGACTTGGACAATACTATTGGCAATGTGGCAGGAGACATGACACCGACTTCAAAAAGTCATACCATAGTGGAAGATGAATCCTCTAGAACTACGATGAAAAGTGTAATGAAAACCTCATGTAATGCTACAAACGACGGAGATAATAATTCTTATAAAAATATCAGCACCGTTGATATCATGAAAGATTCGACTGATGCAAACTTGTGCAAAGATAATAGATtgttttcagaaccggaaaatgagaattcaTCTTCGGCGGAAGTAGTCGCTCCAAAAAACCTTTCTTCAAATCGCTCTTCTTCCTCTAACATTGTAACGCGGTCGCGTGAAGTAAACACAGTAACCGAGAATGACACGGTGGATGAAAAACTCGACGATATACAGGGTAGCGATTCAGTTGCAGTAGTAGGAACATCTTCGGTAAACAtgacaaatttgaaacagGCACAATCGCTTGAAGATTCCATCGTTCGAGCTTCAATTGACTGCGTTGATCGGGATAAAGAGAACTCCGTGTCTGATGGAGAACTTTCGACGCATTCGCAGCAAGAAGGTCGGTTGATTATAGACACAGATGAAAGAGACTCCGAATCACAACAAATAGAAGACGTACCGCCAAGTACACCAGTTATAGGCTGTTCTAACAGCAGCGTCAATGCTACGGTACAGGATAAAAAAATTACCGAAGAAACAGAAGCAGCTTCAGGAAAGGTATGCGTCCTTTGTCAGAAGCCATTTAAGAGCAGTACTGGCTTGGAGAAGCATTTGAAGTCACATATACAATGTATGAGCGGTTGTTGTCTTATTTGTGATAAACTGCTCGATAAGCATCATGCATTGGCACATTATCTTGAACATTGCGGCTGTTATGAAGATGGTCAATCTGGTTTTCATTCATGTAATTtttgtaaacaaaaatttaagaCAAAATCAGGTCTCACAAGTCATAAGAAATATAAACACAACAGAAGCACACATTCGAAACGAATGGAAATAGGTTCAGAAAATGAATCCATAAATGCAGATAATAACAAATGTGATGTTTGTCACGAAATTCTTAGCTCTAAGGAAGAATTGTTCTCGCATTTGTATCAGCACACGCCGCAAGAATTGCAAGCTGCTTTTGAATCTGCAATGGCTAGAAAAAAGCGGTCGTTAAGTAACACTACCATTTGTGGAAAAGAAAGTAGCGTTGCATCCGATAATGAAGCATCTCAAGATAAGGAACAAGTTCCGACTCAATCGACAGAGGCTACCGCTGATACTTCACTGACGTCGCCTTCTTCAATACCAAATTCCGAAGTTTCCATTTGTACGTGTCACCAAGATGAGAGGTTAGAAATATCTGGTGGTGTGATAATCGAAGTTGCGCTAGTCTGCGGACaatgtaaaatattttttaaatcacCAAAATGCTTCAAAGATCATTACAATAATACACCGTCAAAATGCAGCGATAAGACTTTGGTCTTGCCTAAAATGTTTTGCAATAAATGTTGCGTGATTCTGAATAGCCTACCAGACATGCAGGAACATTTAGAAACGCATAGCGAAGGCGGCGATATTCAGCTGAAAGCATCGATACTCTGCAAATCTTGTAATATATTCTTTTTCGGAATAGGatcgtttttttattctcactGGTCCGACCACTGCAAGAGCTCACTATTCATTGCTGACcataattctttttcaaacaaaatgaaaGTGAAGATCGTAGAACCCGGTGGTCCAGAGACTGGAGACGAAGATGAACCCACGGAATGTCTTTTTTTGGCGGATCACCAATgccaaaaatgtgaaaaaccATTCCAACTTGAAGCCGATCTGAAGAAACATCTGAATTCATCAGATTCATGCTCTGGAAAAGCTGAGACTGCACCTCGGGTCGTCGACGATCCCAAAGCGggtttaaaaataatttgtagCATGTGTAATAAAGAATTTATCGATAAATCGACGTTTGATGCACACATGGACGAGCACGAAATCATTCAAAGTTTTCTACTGGCGCCAAAATTGGCACAGAATGACCAATGTACTTGCAGTATTTGTAAAGTCAAATACAATACGATAACAGATTACAAAAATCATCTAATTAAACATGAAGTAATTCGGGAAAAGTTTCAATGCAATTATTGTAATCTCACAATGGTTAGTCTAGAAGGCTTTAAACGCCATTCTGCAGATCACAAAGGCACGTCAGAAAAACCAGTTACGTGTAAAGTTATATTTGTTATGGCTAAGTTTTATTGTAGACTTTGTAAAGTGTGGTTTGAGAATCAATCGACATTGTATGAACACCAGGCTATGCACGGTAATGTGCTTCTACCGAAACCGAAGTCTGCACAAATTCCGATGACCGATATCGCGCCTGCTACTGGGAAGGCAAGTCATGTTTGCAAAACGTGCCGAAAAGAGTTTGATGACAAACTGAAGCTAGATGCTCATGTCTCTACACACGAGGCAGATACCTCGGACCACTCGAAAGTAGATCCTGTTGTAATCCACCTATCTGAAGATTCCAATTCTACTGATGTTGAAATAATTGCGACAAAAACAAGCGAAGAAAATCAGGAGCCTGCCGTGAAAAATGATGTGATTCAAGAGCAACAGAAGACAGCAGATATCCAGGAAACCAAGAAGCCATCATTTCTCCGTGTTAAAAATCTTGAAGAATTATTACCGTACGCTTGTAGCAAGTGTAAATCAGAGTTTGACACGCAACTAAATCTCAGCAAACATATTTGTACTCCAGATATGAAACCCGCTCAAGCCAAAGAGTTGAAGTATTTGTGCAGAATCTGTAAGAGGTATCAGACCGACAATCGATCTGATTGGAACCTGCATATATTAACACACTACCCACTTCTATGCACTCCAAAATTTAATGAATCTTGGTTTTATTTGTTGAAAATGCCAAATGGGCAAAAAGTTTTAAGATGCCGTATGTGTCAAAACTACCAATCTTTAACGATTCATTCCATGGAGCTTCATTTCATAATCAATCACCGGGATGTTTATCATCCAGTTTATGAATGCAGAGTTTGTCATACTTTCAAAACTGATATGATACATGAAATTCGACAGCATGAAACTAGTCACTTTCAACAATCATCTTCGCTTCCACCATTACCTAACTCTGCTAATAATTTACCGTCTGCTCAACCAGTTGAAAGAAGTACATCCTCGCCTCCGCCATTGATCCATTTTGTCAACTCTCAACAAATAGATTCCAGTACATACAAAAGTGTTTTATCTTCATCCAATTCAACGACTCAGTCAGTTGATAGTCCCGAAAATGTTCAACAAGTGTTGAATTCGTCCGTAAGTAGGTCAGATAATAATCCACCATCACTCCAGTTACCACAAGTACCCGCCAACTCTCAACAATCGGGCGTAACGATTCAACCAGAGAATAAGTCCAATAATTTGACACAACCAATTCTGATTCCACCCTCGTCCAGCTCAGGAGGCAGTTATGCAACACTAAACTTGAACAATTTCCTACGACCCGGTTCGAATCTAGCTGTAACGACCTCAAGCAATGGAATAGCCCCATGGGGGATGGGGTTTCAAACAGTGCAGCATACCGCTAATTTTCCACCACCGGATCAACCAACACGTCAATCAGATAACAATTCAAATGAATCTCAACAATCTATTGCGATTCCACCAGAAGTGACTAACTCAAAGAGTGATCAACAGTCACTTCAACCAATTGTAAATTCTAACAATTTTCAACCAGCAATATGGATTTCATCCGTAACTGGCTCAGACAATAATTCAACCTCGCTCCAGctgcaaaatttcaacaactCTCAACAACAACTGGGCCCAAATCTTCAACCAGATAATAATTCTAACAATTTGAAACAATCTATTTCAATTCCACCTGTGACCGGTTCGGGTGGCAATGTATCGTCATCGCAAACAATGGAGAATACACAATGGTTAACGACAACGGCGCAGCCTctacaaattcaaataaacAACGTGACGCCATTCAACAGTATGACCAACATGATGCACGCATTACCCTTGTATGTAGCAGCAAATATCATATACACTTGTCGTATTtgtaaaaattacaaatgctCTAACGAACAAGATTTAAAAATACACGAAGCTTTACATGAATTGATTCAATTGGGTGAAACTACGGAAAAATGCTTTCGGTGTAAAGTATGCGCGGATACTTTTTGTCCGACCGATGAAAACCTAAAAGCACATATGGACATCTGTAATAAATCTGAGAAATCCAGTACATTACCAAATCAAACGCAGCAATCTATTGTAGCTGACACGCGAATCAAATGCAAACATTGCCTTCAGACTTTTGCATCTTCTGCACAGTTAACGCAACATATATATTCTAATCACACACCACCATTCACCAATCAACTACAAAGTGATAATCAGTTCCACAACTCCTATCCCTATAATTGTCAAATATGTTCAATCGGCTTTTTGGACGAATCTCACCTTCATGCACATATGCGACAGATACATCCTGGCGTGACATTACCACGTCGAAAGTTAAACGATGGTAAAACATTATATCAATGTGATACTTGCGGTTTACTTTTAATATCTGAAGCGACATTTAAATATCACATGAAGTCGCATAACTTGGGTTATCTCTAA
- Protein Sequence
- MALPQHKSKTSKGKNCENMDIRNDHDSLNASEPNGNSLNFVSNGIANDDNVEDEDSRKYNAAVNIASCKPCSVILQRLSEEEVRILSSKNNLRVKNVRKRTRFSSKSKRRNNIRAIDRKFPSSGDRTSGNNSKYTAKNKLKNLRTRKKREEVEHSDHSGQTIQLISEHNLSCSNQIFHNKPGTPSSEEKFSSDKLIQNRASRKDPRNTTSKVKDGNEPASSDTESFSQQGSESRVTRQKSSSLSLKTKITDIKDDDDCPRQDAHTNILASDNSEELTDTDNNIDGSDRTISLLKRLKFMFEDSLNRFTDEKSSLQKPSIETFQTKDAVEIERSCSSSTDSGTKVAPAKRFRLSLKTKHVTKKGGARRQDPSDEILQSKDSNETSKSITAGSNHGKRMIKRKLEDANGVGALVPEIKKSRKNLTRNDSGEPQKLHSLSNKSSVSTEPNRTDALKGSQLVGNGGSKEKRKHRAGKVAQVVKSLSIPVVRLDKMANPTTSKQIDNAKALDCSIDMNVDKLAPEKENFDTKEIVGSSCFNRTRDTKITDYFIKVDRSSIVSVNDNKNNENLDQLEHLTQKQKYGISKAAAVLLIDFNNLKIPGPKYLASQIEELTLEYANSFPDINFINTKTNTLPSSSVSRSINLPTILNEIMANDIQSSIDITHSPSIHDNTDKPSHDSLQTHSVPISKKASPDSHKSPNVIKHTPVKSTNDVTNREQSFTEFPNLLSVHYRVDEADRGSLQTDTVPIRDKLSRTSPKSPRVNDHTLVEKTQVSLDDNLRSRTPRSGKDRELPNSTERPKDCLAVNEDSAADQEIPDKHLSCEKSFDLRDKPQSSVTKVNQLGHHLSDRQTGNDMKGSLRKPNSHVRKLVLSPKKRADLVNDEIELRESQLHVSDKVNESPETNEPLKSSDHITHTDISEASPQSNKLKAEVNAASVNDPNSKTAMDQPDTCPILPTIVKSPIKVGNLKIPLQHGKSRRLPVNSMTILSREMFEEQSSWMDLDNTIGNVAGDMTPTSKSHTIVEDESSRTTMKSVMKTSCNATNDGDNNSYKNISTVDIMKDSTDANLCKDNRLFSEPENENSSSAEVVAPKNLSSNRSSSSNIVTRSREVNTVTENDTVDEKLDDIQGSDSVAVVGTSSVNMTNLKQAQSLEDSIVRASIDCVDRDKENSVSDGELSTHSQQEGRLIIDTDERDSESQQIEDVPPSTPVIGCSNSSVNATVQDKKITEETEAASGKVCVLCQKPFKSSTGLEKHLKSHIQCMSGCCLICDKLLDKHHALAHYLEHCGCYEDGQSGFHSCNFCKQKFKTKSGLTSHKKYKHNRSTHSKRMEIGSENESINADNNKCDVCHEILSSKEELFSHLYQHTPQELQAAFESAMARKKRSLSNTTICGKESSVASDNEASQDKEQVPTQSTEATADTSLTSPSSIPNSEVSICTCHQDERLEISGGVIIEVALVCGQCKIFFKSPKCFKDHYNNTPSKCSDKTLVLPKMFCNKCCVILNSLPDMQEHLETHSEGGDIQLKASILCKSCNIFFFGIGSFFYSHWSDHCKSSLFIADHNSFSNKMKVKIVEPGGPETGDEDEPTECLFLADHQCQKCEKPFQLEADLKKHLNSSDSCSGKAETAPRVVDDPKAGLKIICSMCNKEFIDKSTFDAHMDEHEIIQSFLLAPKLAQNDQCTCSICKVKYNTITDYKNHLIKHEVIREKFQCNYCNLTMVSLEGFKRHSADHKGTSEKPVTCKVIFVMAKFYCRLCKVWFENQSTLYEHQAMHGNVLLPKPKSAQIPMTDIAPATGKASHVCKTCRKEFDDKLKLDAHVSTHEADTSDHSKVDPVVIHLSEDSNSTDVEIIATKTSEENQEPAVKNDVIQEQQKTADIQETKKPSFLRVKNLEELLPYACSKCKSEFDTQLNLSKHICTPDMKPAQAKELKYLCRICKRYQTDNRSDWNLHILTHYPLLCTPKFNESWFYLLKMPNGQKVLRCRMCQNYQSLTIHSMELHFIINHRDVYHPVYECRVCHTFKTDMIHEIRQHETSHFQQSSSLPPLPNSANNLPSAQPVERSTSSPPPLIHFVNSQQIDSSTYKSVLSSSNSTTQSVDSPENVQQVLNSSVSRSDNNPPSLQLPQVPANSQQSGVTIQPENKSNNLTQPILIPPSSSSGGSYATLNLNNFLRPGSNLAVTTSSNGIAPWGMGFQTVQHTANFPPPDQPTRQSDNNSNESQQSIAIPPEVTNSKSDQQSLQPIVNSNNFQPAIWISSVTGSDNNSTSLQLQNFNNSQQQLGPNLQPDNNSNNLKQSISIPPVTGSGGNVSSSQTMENTQWLTTTAQPLQIQINNVTPFNSMTNMMHALPLYVAANIIYTCRICKNYKCSNEQDLKIHEALHELIQLGETTEKCFRCKVCADTFCPTDENLKAHMDICNKSEKSSTLPNQTQQSIVADTRIKCKHCLQTFASSAQLTQHIYSNHTPPFTNQLQSDNQFHNSYPYNCQICSIGFLDESHLHAHMRQIHPGVTLPRRKLNDGKTLYQCDTCGLLLISEATFKYHMKSHNLGYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -