Pate018469.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720668.1:9043877-9047909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00093 0.097 13.6 0.3 1 23 789 811 789 811 0.97 2 7 0.00084 0.088 13.7 1.8 1 23 856 878 856 878 0.98 3 7 0.00081 0.085 13.8 0.8 1 23 938 960 938 960 0.97 4 7 0.024 2.5 9.1 0.0 1 23 976 998 976 998 0.98 5 7 0.0027 0.28 12.1 0.3 1 23 1029 1051 1029 1051 0.97 6 7 0.0035 0.37 11.8 0.0 1 23 1074 1096 1074 1096 0.96 7 7 0.51 53 5.0 0.2 1 23 1101 1123 1101 1123 0.96
Sequence Information
- Coding Sequence
- ATGtcaaataaacgaaaaataattgacatAGACACCAAGTGTCGTCTTTGCCTTGGAGACGAAGGTTTTATGAGTTATTTATTCGACGAAATATTACTGGAGAAAGTTGAAAACATAACCAAGTGTACTTCTATTGATATAAAAGAGGATGAAGATCTGCCAAATAAAATCTGCCACGTCTGTATGTACAAATTGGATACATGGAACGAATTCAAGGAACAGTTTATCAAGTCAAACCAGATTCTCTTCGCGCAATTAGAACTTGCTGCGTCTAATGATTTAACTTCTGAGACGCATAACCCTAAAAGAAAACATGATTACCTGCAAGCGACCGATGTTGAAGATTTATCAGAAAGTGTTACGACGAAGAAATCTAAACAAGATGATCCGCCATTGAAGCAACTACCAGAGTCTACTAACACCGATTGTGTCACACAAGAATCcacaatatatgatataaacCTTCCCGAGGATGCTGTGGAAGTTTCATCTCTGAAAGAGAATTTTGATCAGCAGCAGGAAGCACCAGCTTCAAATTCAGCGGcagtaaaaaatgaagaaggaaaagataAAAGTAACGAGAATGAAGCTGAATCTCAAGTTCCACAGGTTCAAATAAAGCCCACGTTGATTCCCCTGAGATACAAACATCTTGTTACAAGACGTAGTAAAACAACGGCTAGAAGAAAAGCTTCAACTAAACGTTGGGTGGCGAGGAAAAAAGCACTTTTAGCGGCGACTGGCGGTTACGGTTCAGACACTGATTCTATAATTTCAGATAATGAGTCGAAGTTGTCTCCGGTACAAAAAGCTCGGGCTAAAACAAATGCGGATAAAGAAGTTGAGAAGCAAAAGAAATTGGCTAGagctttgaaaaatttagaaaCTGATATGAAAGGGGAATACGGATTTAAATATGATAgcgatacaattattcttccACATTCAGATTCAGAAGCAAATAAACATCAAACAAGATCTCAGAAAAAACTTATTGTTGAGAAAGTTCCAATCAATGAGACAAGAAGTGTGGTGAGTTTAACTGAGAAGGGAAATAGCAGGCAAAATCtgaatgaaaaacacaaaactATGGATCAGAAAGAGAATAATTCTGTTTCGATAGAATTTAAGTCAAATATAGGCGATGTAAATCCATCATCCTCAAAGGATATTAGATCAGTATCAAAAGACCAAAATAACCAAAGCTTGATGAGTTTGGAATCTTGTTTTAATGCACAACCGATTAGATCGGAAATAGAAGTTGGAGATGCAACTTATATCGTTACCTCAACATTGGTGCTTTCAGAATCTCATTATCCAAATAGAACTGACCTTCATAATCCTCCTTCAAAAGACGTAAACGGTGTTCTCAATTCAGTGGATGAGAATAGTCAGGAACGTAacacagatattatcgatgcTGTACAACTCAGAAGAATAAATCCCAAATTGCAAGATGATgcagaggaaaagaggaatgTTGAAAGATGCCTAAACATCGAAGTTGAAGGTACAGAATTAGAGGCTCTGCAAAAAGTTCAAGCAGATTTAGCTGCTTTTGTTGAAAAAGACATGAAGAACAAATTATCCAACAAAGATTCACTGTCGTTTGtcgaaacgaaacaaaataagCCGAAAGATTCATTCCAGTCGTTGGATCAACAGCTTAAATCAATTGTGGAAACCGCGATTAGAAAAAACATCGAGACTTCATCGAAACTGGGAAAAATTCCTGGTGCTAAAATCAGAGGTTATAGAAATCAGAAAGTTACAACTTTTTCACCAGCTTTTGTCAAAGCGGCGAtgaaatcaaaaatatttcagccTAAAGTTTTGTTGATGAGATTAGACCTAGGTAAAGTCCGAAAAAGGTATAAAATTAATAACATTTCTCTGATGGGGGGTCAGAAATCGAACGATGAAGATATTGAAGATGGAAATGCAATGTATAACGAAAGGCAGACTGATTCATCAGCAGTATATCGTACTTTAAATCTAGATCCTGCTGGTACTTCAGACGATGAAATAGTAACTTCTACTCCAAGGGTTTATAAAAAGAGTTTAGAACTGATGTCGGAAGCatcgaaaacaaacaaactcTTGGTAAAAAGATTATCCGGTCCTAAAGGAcgtaagaaattatcattatcggaGAAAGTTCTTTACACAATACGAAAAGGTCTTGCTAAAGACCTGGCCATTCACCGTGTTGAAAAGCCAGTTTGTGAAACTGTAGAATGCGATACGACGACTAAAACTTTACCCCTGCAATCTATTGTAGAAAAGCAAGCAGCGAAGAAAGTTCAGTTTACTAAAAGCttgaaaaaacaaactgtCAAATTAGAGGAATCGGATCCTCGTAAATATTCTTGCAATATTTGCGACCAAACATTCCCTAGTTTGGATAAAAAGGAAGAGCATTTAAAGGCCCACAAACAGGCACCCGCTGTGATTTCTGATGCAGCATCAAAAGCTAAGAAACCGCGCATGATGCGGTGTAAAAGATGCCACGAAGTTGTCGATGCGAGATTAGTCAAAGTCCATACTTGTAGGACGACGAAATTCCATAGATGTTATGTTTGCAATGCAATGTTCAAGTCAGAAAAGACGCTAATTTCTCATCTGGAAACGCACGAGGAATCTGAatttaatattgaaaatatcgagcGCGGACAGAGCACTGGAAAAGTAACGGATGTTACAAGTACACAAGTGGTAATAGCTCAGCGTGCGGCTGATTCTAATACTACAATAACAACAGCTAATAATGAATACTgtgaggaagagaaaaagattgtTCCCAAAGAAGAGTACACGTGTTTTGTttgtgacaaaaaattcacagatGAAGAGATACTCAAAGATCATCTTCAACAACATTGCAATGACGTTAGTGAAGACGATGCGAGTTCGGGTAAGGAACAATATCAATGTGCGATTTGTGGAGATACATTGGATACTGAAGATGCGTTAGAAAGTCATGTAGAAAAACATCTGTGCGACGATGAGGATGACAATCCAAATCttataaatatatcaaatGATAGTGAGCATGAAACTAAAGGAAccgaaacagaagaaaacttCAAGTGTTCTCAatgtttgaagaaatttgattcAGAAATTACATTAGCTCTGCACATCCAGGCTCACGAAGAAGAACTGGCGATAGCTCAGTGGCAGAAAGAATCTACTGTGAAAATTGAAGCTGAAGAACAATTCTTTTGTGCTATATGTGAAGAGGCTTTCAATGATGAAGAAGAACTGTCTGAGCATCTTGATGTACATAACAGTAATTCTCACGTTTGCTTTTTGTGTGAAACACCTTTTCTTAGTCTCGAAGAACTTCAAATGCACGTTGCAAGTCATTGA
- Protein Sequence
- MSNKRKIIDIDTKCRLCLGDEGFMSYLFDEILLEKVENITKCTSIDIKEDEDLPNKICHVCMYKLDTWNEFKEQFIKSNQILFAQLELAASNDLTSETHNPKRKHDYLQATDVEDLSESVTTKKSKQDDPPLKQLPESTNTDCVTQESTIYDINLPEDAVEVSSLKENFDQQQEAPASNSAAVKNEEGKDKSNENEAESQVPQVQIKPTLIPLRYKHLVTRRSKTTARRKASTKRWVARKKALLAATGGYGSDTDSIISDNESKLSPVQKARAKTNADKEVEKQKKLARALKNLETDMKGEYGFKYDSDTIILPHSDSEANKHQTRSQKKLIVEKVPINETRSVVSLTEKGNSRQNLNEKHKTMDQKENNSVSIEFKSNIGDVNPSSSKDIRSVSKDQNNQSLMSLESCFNAQPIRSEIEVGDATYIVTSTLVLSESHYPNRTDLHNPPSKDVNGVLNSVDENSQERNTDIIDAVQLRRINPKLQDDAEEKRNVERCLNIEVEGTELEALQKVQADLAAFVEKDMKNKLSNKDSLSFVETKQNKPKDSFQSLDQQLKSIVETAIRKNIETSSKLGKIPGAKIRGYRNQKVTTFSPAFVKAAMKSKIFQPKVLLMRLDLGKVRKRYKINNISLMGGQKSNDEDIEDGNAMYNERQTDSSAVYRTLNLDPAGTSDDEIVTSTPRVYKKSLELMSEASKTNKLLVKRLSGPKGRKKLSLSEKVLYTIRKGLAKDLAIHRVEKPVCETVECDTTTKTLPLQSIVEKQAAKKVQFTKSLKKQTVKLEESDPRKYSCNICDQTFPSLDKKEEHLKAHKQAPAVISDAASKAKKPRMMRCKRCHEVVDARLVKVHTCRTTKFHRCYVCNAMFKSEKTLISHLETHEESEFNIENIERGQSTGKVTDVTSTQVVIAQRAADSNTTITTANNEYCEEEKKIVPKEEYTCFVCDKKFTDEEILKDHLQQHCNDVSEDDASSGKEQYQCAICGDTLDTEDALESHVEKHLCDDEDDNPNLINISNDSEHETKGTETEENFKCSQCLKKFDSEITLALHIQAHEEELAIAQWQKESTVKIEAEEQFFCAICEEAFNDEEELSEHLDVHNSNSHVCFLCETPFLSLEELQMHVASH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -