Pate016018.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720666.1:614550-618104[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00011 0.012 16.4 1.2 1 23 103 126 103 126 0.97 2 13 0.01 1.1 10.3 4.6 2 23 259 281 259 281 0.91 3 13 0.0047 0.5 11.4 1.2 2 23 350 372 349 372 0.95 4 13 9.9 1e+03 0.9 7.5 3 23 459 480 458 480 0.94 5 13 0.11 11 7.1 0.3 1 23 530 553 530 553 0.97 6 13 4.4e-05 0.0046 17.8 0.1 3 23 602 623 601 623 0.96 7 13 0.00087 0.091 13.7 0.1 2 23 650 672 649 672 0.90 8 13 0.0077 0.8 10.7 3.6 2 23 717 739 716 739 0.96 9 13 0.1 11 7.1 4.2 3 23 754 775 752 775 0.92 10 13 3.1e-05 0.0033 18.2 0.4 2 23 826 848 826 848 0.96 11 13 0.049 5.1 8.2 0.7 1 23 925 947 925 947 0.98 12 13 0.00021 0.022 15.6 0.1 2 23 963 985 962 985 0.96 13 13 0.0035 0.37 11.8 0.7 1 23 1065 1088 1065 1088 0.98
Sequence Information
- Coding Sequence
- ATGGCGTCGACGATAGCTCGAGAATCTCTACTTCCGGAATCCGGCGACGGGGACAGCGACGGATCAAGCGTCGAGGACAGAGAGACGTTGAAGCGTCCTCACGGCGAGGTGGATTCGGCTGGTGgaaaaaaacgtagaaaacAATCGACCCCCGTTAGATTCCCAGCGTTGCTAATGAGCGATGATCGGGAAGACGAATCTGAAGAAGATGACAGCACGCCGGGCGTTGAAGACAGCGAAGGTAAGCCCACGGTCGACCACCGGATCCTCCATCAGACGTCAAaggacgaaaatttgaataacgaaTTCCGCTGCCAATATTGTAGTCAATTGTTTGATAGCAAGGAAATGCTTAACCGCCACATCAACAGCGAACATAATTTATCGAATATTTCAAACCAGAATCCACAGCGGTCGCCGGTTCACTCTCACATTCATATTAAACAGGAGTTAAATACTCATCAGGAACAGCAGCCAGAGAGTCCTGTAAATCTCTCCGGTATCGGTATCAAGAGTTTCGCCGCGACGTGGCTGTCGGGACACGTTCAATCCCAGTCgcaaaatattcaattgcAATCTCAAACCGATGAATGGCCTCCTTCCGGTTCGACCGGCTCCTTATCCTCAATTTCAAATCACCTTCAAGCACTCCCCTTTGCCGGTGCGCTCGCGCAGTATCTTCCGCTGCCTAACTTCACGCTGGGAGATACGAGCCAAGTTGCTAATAGGCCGCCGATAGGTCCGGCGCCAGTCAGAATATTCAACCCAGACGCCTACTGCGATTTGTGTAACAAAGAATTTTGCAACAAGTATTTCCTCAAAACCCACAAAGCGAATAAACACGGTATATACGTTGATACTCCAGGGCAAACAGTCGGGGAATCAGGTTTCACCGGGCCGCAATATCCGGGGTCCTTTTTAGCCGGTGGTATGAAACTCGATCAACAACCGccgcagcagcaacaacaacagttGAAACTGGAACCGCCGACGGTCGGAGTCCCTGGTGGGCAACCTGTCCTTCAAGCACCACAGACTCTGAACTCGGTTTGCGACCTTTGCCAAAAACGATTCAAGAACGATGAATTAGTGAGGAAACACAAGCAGAAAGTTCACAGCGGTGATCCCAACGACGCCGATTCTCAAATGCTGCCACCTCAGTCCGCCGAGGATGAGAGAGAGACTTCACATCACAGCCTCAGCCCTGGGGCAATGGAAGCGCTGTTCAAACAGGAGTTTGGAGTCGAGCAGGAAGACACAACCTTCATGCCTGCACCCAGGCATCTCTCTCCTCAGTCTATCCAGCAGGCCAGAGATTCTGGGTTCAACGTTGACCGGTTGAGGAGACTGGGAGTCATAAACCCTGAAGCATTCTGCGAGGTTTGTTGCAAGGAGTATTGCAACAAGTATTTCTTGCGGACACATAAGATGAAGAGACACGGTATAGTGGTTCAAGATAGTGAAAAATCTCCGAGTAATCCAGCCGCAGCGGCGGCATGGCATCACGTGCAGACTAGTCCGTTGAATCTCATCGTTGGTGAGACTAGTGGGAATAGTTCTGAGTCCGGTGATCGTCCGGGTGAAGAGTACGAGTGCAAACCATGCGGGATTAGGTTTCAAACGCTTGGACTGCAGCAGGCACATCGTCAGAAGCTACACGAAATCGAGGAACAGATATCGCCGAAGCAGGAAAATGACGTGGACACCGGTGACCAGAGAGCCGATTCGATCAGCGAGGATCTCCAGAAGTTGCAGACGATGATCTTACAGCTGAACGGTTTGGAATCAGGGCGAGGAGCGGCCTGTCCGATCTGTGGAAAGGACTACGATTCCAGACAATCCTTGAGAAGTCACATGGCAATGGATCACGGTGCGGTCGTTGACGAAGCTGTGTCGTCGCCCTTGCAGGGAACGGAAAAATCACCAACTCCGAGCAGCAGTTCTCTGATTTGTACATTTTGCGATAAGGAATTCCCCGGCCAGGATGCACTGCGGAAACACGTGGCCGAAGATCATCAGCCCTCGACGCCGACTTCGGTACCATTGGCGACAGTCCTTCCGACTGTTCCATCGACTATTGCACCGACAACGCCGACTGTCCAAACTCAGGAGAGAAGAAGCTCAGTCTCTATGACCCCGACGTCGAGCTACTGCGAGATATGCAACAAGGAATTGTGCAACAAATACTTCATGAAGACACACATGCAACGAATGCACGGTATAGAGATAGAAAACGGAGCACAGATCGGCGGAGTCATATGCAACATTTGCAACAAGGAATTATGCAGCAAGTATTTTCTCCGTGTTCACAAGCACAATACTCACGGTATAATCGAAGAGGGGACTACCACTACGTCGAGCAATTCGTCGGCCGCTAAACAAGTCGATAACGACACGAACAACAGCGAAGATCCCGCCCTAAAACCCGAACAACTGAGCGATTTGACTCATCGGTACTACACTTACTTCACGGAGGTCTGTCCAATATGCAACAGAAGATTCCGGAGCACAAAATGGCTGAAGGCACATCTTCTGAGCGATCATCAGAAGGCGGGTATAGACAAATGGCGGGAATTGGAACAGCAATATCAATCCGTATCACGAAGTGGAAGGACGCCCGGTCCCTCGCGGCTGTCGCACCAAAATCCAAGCCTGAAAATACCGAACGGTATTGAACTGAGCCAGCATTTGAAAACGGGAGATTACTCTGGGCTCGGGAACCAAGTGCTATCGACACTCTTCGGCTCCGCTGAAGACCAGCAATTGCAAAGCTACCGGTGTTCGTACTGCACGTTCAGTACACCAGTCCTGGCGTTCCTCTTCGTCCACGAGAGATCTCACACGAGCCCGCAAAGTGTCGGCAGCGTAGACACGGAGAGAAATTTACAATGTCCTGTATGCGTCCAGGGTTTCGCTCAGCCTGAATTACTCCAGCATCACTTACTTACTCAGCACCAGTTTCCCGGTATAATATCACCATTCCAACCGGCGCATCTACAGCTCAATAGTTCGCGACCCGAATCCTCGTCGGAGAAGGATAGCGAGTCGAAGGATCGGACGGACCTCGATACGAAGGACGATTCGAAACAATCGAGCCCACACGCCTCCGTGCAAAACGTGTCGTTCAATGATCTACCCAAGCTCCAAAGACCGGAGGAGGCGACAGTTGTCCAGGTGACGCCGCAGGGTGAATACAAGTGTTCGCAATGCGGACTTTCCAGTCCAAATTTGAACCGTATAAAAAAGCACATCAGGAAGGATCACAGGACGGGAGTGAACGATCCTCAAGAAACAGTGATCAACGAATTGACGAGGAGTCTCAGGGAGGTTGCCAACAAACACAAAATTCCCGCCATTTACGCGATGCCCCAAGACACGAATTCGAATCCGAACCAAACGGTAATGCAACAATTCCTCATTGAAGAATGCGAGGCTGTTCACGGTGGCTCGGAAATCAATacagaaaagaaatttgcacCTGCATACGTTTACCTCCCGGTTAGGACGCGCATAAATGCCCCACTCTTTGCATCCTTTAATCTAAGTCCAACCTGA
- Protein Sequence
- MASTIARESLLPESGDGDSDGSSVEDRETLKRPHGEVDSAGGKKRRKQSTPVRFPALLMSDDREDESEEDDSTPGVEDSEGKPTVDHRILHQTSKDENLNNEFRCQYCSQLFDSKEMLNRHINSEHNLSNISNQNPQRSPVHSHIHIKQELNTHQEQQPESPVNLSGIGIKSFAATWLSGHVQSQSQNIQLQSQTDEWPPSGSTGSLSSISNHLQALPFAGALAQYLPLPNFTLGDTSQVANRPPIGPAPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDTPGQTVGESGFTGPQYPGSFLAGGMKLDQQPPQQQQQQLKLEPPTVGVPGGQPVLQAPQTLNSVCDLCQKRFKNDELVRKHKQKVHSGDPNDADSQMLPPQSAEDERETSHHSLSPGAMEALFKQEFGVEQEDTTFMPAPRHLSPQSIQQARDSGFNVDRLRRLGVINPEAFCEVCCKEYCNKYFLRTHKMKRHGIVVQDSEKSPSNPAAAAAWHHVQTSPLNLIVGETSGNSSESGDRPGEEYECKPCGIRFQTLGLQQAHRQKLHEIEEQISPKQENDVDTGDQRADSISEDLQKLQTMILQLNGLESGRGAACPICGKDYDSRQSLRSHMAMDHGAVVDEAVSSPLQGTEKSPTPSSSSLICTFCDKEFPGQDALRKHVAEDHQPSTPTSVPLATVLPTVPSTIAPTTPTVQTQERRSSVSMTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIEEGTTTTSSNSSAAKQVDNDTNNSEDPALKPEQLSDLTHRYYTYFTEVCPICNRRFRSTKWLKAHLLSDHQKAGIDKWRELEQQYQSVSRSGRTPGPSRLSHQNPSLKIPNGIELSQHLKTGDYSGLGNQVLSTLFGSAEDQQLQSYRCSYCTFSTPVLAFLFVHERSHTSPQSVGSVDTERNLQCPVCVQGFAQPELLQHHLLTQHQFPGIISPFQPAHLQLNSSRPESSSEKDSESKDRTDLDTKDDSKQSSPHASVQNVSFNDLPKLQRPEEATVVQVTPQGEYKCSQCGLSSPNLNRIKKHIRKDHRTGVNDPQETVINELTRSLREVANKHKIPAIYAMPQDTNSNPNQTVMQQFLIEECEAVHGGSEINTEKKFAPAYVYLPVRTRINAPLFASFNLSPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00060630;
- 90% Identity
- -
- 80% Identity
- -