Pate018100.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720668.1:2755425-2758370[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.2 6.5e+02 1.6 1.2 1 19 434 452 434 452 0.90 2 12 2e-06 0.00021 22.0 2.7 1 23 463 485 463 485 0.98 3 12 0.0013 0.13 13.1 4.3 1 23 491 513 491 513 0.98 4 12 0.0026 0.27 12.2 0.4 1 23 519 542 519 542 0.98 5 12 0.00025 0.026 15.4 0.4 1 23 548 570 548 570 0.98 6 12 0.077 8 7.6 2.4 1 23 576 599 576 599 0.96 7 12 0.0035 0.36 11.8 1.4 1 21 627 647 627 648 0.94 8 12 7.8e-05 0.0081 17.0 0.1 3 23 658 678 657 678 0.96 9 12 0.00032 0.033 15.1 2.0 1 23 684 706 684 706 0.98 10 12 2.3e-05 0.0024 18.6 0.9 1 23 712 734 712 734 0.98 11 12 0.0007 0.073 14.0 2.2 1 23 740 762 740 762 0.98 12 12 8.1e-05 0.0085 16.9 4.9 1 23 768 791 768 791 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAACCATTCTGTACCCCGGGGTGGAATTGGAGGATTTCTACATGGTAATGGAAGGGATTCGATCCAAGAAGAGGAAGATTACTAGGGGGAGTAGATCAGAGATCAAACTGGATGATCGCATGGAATCTTTATGTAACGAAGAAAGTACACAACCACAAAGTGAGAAATATGAATTGATAGAGCTAGACTCGGACTCTGACATAGAAGAGGGCTTTCATGCAGTGGCGGAtggtataaaatatgaagagACAAACATGGAAACACAGGAAATTGAAACCACTTGTGTCAATCCACCCATATTCTCTAAAATGCGCGAGATACAAAAGACTGAACGAAGTTTACTGGATGATAAACGATTGCCGTCACTCTGTAGACTCTGTGCAATTCCATGTGACAATATGATTGACATGTTTGGTCCTACCATACTGCACAAGCAtgttattaaaaaaattcatcgttGCCTACCCATAACGGTAACGAAGACCGATAGTCTAACGAAAAAGGTCTGCCTGTTATGCCTAGAAAAACTCGAATCATGCTATCGATTCCATGAAATTGTAACGCAGGCTGAGCACCAGCTTCTTTCAGTTTGTAAACAAATGATGAGTAAAATTCGTACAACaacgaaatttcatcaccAAGCTTGCTTACAAAGCAATGGACATCATCCCTCTGATGAAAATGCTGCTGAAGAAAGAGTATCAGTTGAAGGCTTCGATAGGGATCACAATACTATAAATACAGAGGAGTTGAGCAATGCAGACAGAGATAGTGAACCGAGGAGTTCAAGCTGTAAAAACCAGAACCTGACGCCATCTATGGAAAGCATAAATCGTGGAAGAATATCAGCATCCCAAAGTGAACAAGGCGTCTGCCATACTGCGCCGAATAGCCCAATGCCTAAAGCATGTGCGGAAGAAGAATTCCAGTCCGGCAAGTGTGCAACTGATTCAGTAAACAATTCTTCAAAACGCAGAGCACATTTTAAATGCAAAATCGAAAGACATCCAATTTCAACTATGAATCCACGTTATTCCCTGAGCAGAGAAAAGCCTACGAAATACAACAGCATTATGGATAAACACCTGTCCTGTGGCAAAGAAATCATTGAGCATGCTCCTGCTGGCCAAAGTGTTGGATGCAATGGCCGTGATAAGATTCTCAATTCAGAGACGTCTCTACAGCAGCATATGCCGGTTACACATAATGAGCGTCAAATATCCTCCGGCAATCTATCTGGAtcgaaatatagAATTGAAGAAGAATTCAACGATCAGCAAATAGAACATACGTTTAAATGTACTTTCTGCAAGCAAGAACAAACCTCcgttgtttcattgaaaaagCATGACAAAATTTGCGTTAAAGATGAAGGAAGGTACATATGCGATTATTGTGAGAAAGCATTCAATCAGCGATGTTATCTCGTTCGTCATATACGAACTCACACCAGAGGCGGACTTTACAGCTGTCACATCTGCTCAAAGTCATTCATTGCAGAACATCGTCTGACTAATCACTACAAAATTCATACAGGTGAACGCCATTTCAAATGTTCTATCTGTGAATGGATGTCCCGATCCGGTAGAGAGATGAATCAACACATGAAATCTGTTCATTCGGAGGAGAGGCCTTATGCTTGTTCTGTGTGCAATAAACGATATAAGTATGCAAGCGCGAGAAGTGTCCACATGGCTACTCAcaagagtgaaaaattgtttaagTGCGACCTATGTGAAGCTCAATTTAAATACAAGTCTAGTATATACGGCCATAAGAAGAAGCGGCACAAGCTGAGAACCAATTCATTCCCACCATACAATATCAGAAtaaacgaagaaaaattgaatggtcATGAAACGAAATACTCATTTGAATGTACTCGCTGTAAGCGTAGCTTCTCCTCCGACGACTCATTTGAGGATCATAAAAAATCTTGCATCAATATTGACAAAATAGCAATATGCGATTATTGTGGGATAGCATTCACATCGAAGAAAGGTCTCATTTATCATATACAAGATCATACCGGGGATCGACCTCACCGCTGTGACATGTGTCTGAAGACATTTTCACGTGAGTTAGGTTTGGTTGAGCACCGCAGAACTCATACAGGTGAACGACCATACTACTGTAACGTCTGTGCAAAGAGATTCACACGTAGACAGGGTTTAGTTCGTCACCTCGTAACTCATACAGGTGAACGCCCATACTCCTGTGGCGACTGTGCAATGACATTTTTACATAAGTATAATTTGTTGCGTCACCGcagaattcatacaaatgaACGGCCATACAAATGCTCTCTGTGTGATGAGAAATTCAGGGACAAGAGAGTACTGAAGCGGCATATATGTAAATTTCATCCAGAAGACGCCTAA
- Protein Sequence
- MDETILYPGVELEDFYMVMEGIRSKKRKITRGSRSEIKLDDRMESLCNEESTQPQSEKYELIELDSDSDIEEGFHAVADGIKYEETNMETQEIETTCVNPPIFSKMREIQKTERSLLDDKRLPSLCRLCAIPCDNMIDMFGPTILHKHVIKKIHRCLPITVTKTDSLTKKVCLLCLEKLESCYRFHEIVTQAEHQLLSVCKQMMSKIRTTTKFHHQACLQSNGHHPSDENAAEERVSVEGFDRDHNTINTEELSNADRDSEPRSSSCKNQNLTPSMESINRGRISASQSEQGVCHTAPNSPMPKACAEEEFQSGKCATDSVNNSSKRRAHFKCKIERHPISTMNPRYSLSREKPTKYNSIMDKHLSCGKEIIEHAPAGQSVGCNGRDKILNSETSLQQHMPVTHNERQISSGNLSGSKYRIEEEFNDQQIEHTFKCTFCKQEQTSVVSLKKHDKICVKDEGRYICDYCEKAFNQRCYLVRHIRTHTRGGLYSCHICSKSFIAEHRLTNHYKIHTGERHFKCSICEWMSRSGREMNQHMKSVHSEERPYACSVCNKRYKYASARSVHMATHKSEKLFKCDLCEAQFKYKSSIYGHKKKRHKLRTNSFPPYNIRINEEKLNGHETKYSFECTRCKRSFSSDDSFEDHKKSCINIDKIAICDYCGIAFTSKKGLIYHIQDHTGDRPHRCDMCLKTFSRELGLVEHRRTHTGERPYYCNVCAKRFTRRQGLVRHLVTHTGERPYSCGDCAMTFLHKYNLLRHRRIHTNERPYKCSLCDEKFRDKRVLKRHICKFHPEDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -