Pate020834.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720671.1:6814924-6818285[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0023 0.24 12.3 0.2 2 23 302 324 301 324 0.96 2 13 0.018 1.9 9.5 3.3 2 23 329 351 328 351 0.91 3 13 0.024 2.5 9.1 3.2 2 23 411 432 410 432 0.95 4 13 0.88 92 4.2 1.2 2 23 438 460 437 460 0.95 5 13 0.0032 0.34 11.9 7.4 1 23 475 497 475 497 0.97 6 13 2.1e-05 0.0022 18.7 1.0 1 23 510 532 510 532 0.98 7 13 2.1e-05 0.0022 18.8 2.0 1 23 540 562 540 562 0.98 8 13 8e-06 0.00083 20.1 0.8 1 23 568 590 568 590 0.98 9 13 0.00053 0.055 14.4 2.7 2 23 594 616 593 616 0.94 10 13 0.00036 0.038 14.9 0.3 1 23 644 666 644 666 0.97 11 13 0.00033 0.035 15.0 1.7 1 23 672 694 672 694 0.96 12 13 4.7e-05 0.005 17.6 1.3 1 23 699 721 699 721 0.98 13 13 0.0012 0.12 13.3 2.7 1 23 729 752 729 753 0.96
Sequence Information
- Coding Sequence
- ATGTCTGGTTGCGCAGCGGTTGGTTGCTCAAATCGTGGGGATAAGGGATTTTTAATGAAAAGTTTTCCCCGGGATCCAAAAAGAAGAGCTATATGGGCAGCTCAAGTAAATAGAGATGGTTGGCAGCCTAATGATCATAGTCGTTTGTGCGAGgTACATTTTGACGGTTATCAATGGGAAAAGACAAGGGAGGATGGCAGTAAAAGATTAAAATGTAGCGCAGTTCCTACTCTATTCGATCAATCGAAAGTAacaaatagaagaaaattctTAAAACCTGGTAAAAGGTTCATTATTCTGAATGATAAATCGGAAACTTCTGAAAAGGCTGAAGAATGTTCCAAGaATCCTCAATCTTGGAACATTGGGACAAACCGAGAGAATAGAGGTCTCTTGCAGCTCGATTGTAAGATTGAATCTGAATTAGGAAAGGAAGCAATGGATTCTAAAGCTAAACCGATTTGGAAAAGCTGCAAAAATTCTAATCTAAGAAGGGACTCGGAATTCTCGAGTATCCAAAATCAAGTAATGAATATCACGAAGCTCGGAGATATTCGCTGTAGACTTTGCACGACTAACACTGCTAAAAACTATTATCCAATATTTGGGGAATTGGAATTGGCGGAGAAGATCAGTCTATGTTTACCTATAATAGTTTTACTGACGGATGAATTACCTCTGCAAATTTGTCAGGATTGTTTATACAATTTGAATATCGCTCATAAACTGATAATCGGATCTCTAAAGGCAGATTCTTGTCTCCGATCGAAATGTATGGGCACTAATAATAACTTATCAGAGTGTTTTAAGAAGCCAGTGGAAATAGCGCCTAAAAAATTACGAGAAATTAGACCCAAATCAACGAATAAAGATGAACCACTATTCAGAATAAATGGTCCAATAAGATGCGATATCTGTGATGAATTCTTTAAAGATATGAATCTATTTGACGTGCACATAGAAACTAGGCACCTCTTTCAATGGCGTTGTTGTTTTTGCGATCATAGTTTTGAAACTTCGCAAGAACTCATTGCTCATAAGACTTTAAGTCATTCTGGTCAAATTTCAAAGTGTGAAGATTGCAAGGAAGGTGAAGCACCGGAAGAAGTTTTTCTAAAAGTATCTAAAATTGGTGGGGAAGATAAAACAAAGACTGAAAATGATGGTACAGATACTGTCGACGATAATTCTCAGGCGAAAGGAatcgagaagagaaaagtaCCATATCTAAATTGCACAAAATGTAAAATGGTCTTTGAGGATGGAAAACAATTCCGTAAACATCATACCATACATTTACCTAGACGtataaaatgcaatttttgtttgaaacgaTGTCCTTCTGTTTTTGACTATCTCATGCACGTTAAAATCATTCATAATCCATCTAAAAGAAACAATTTGAGAACACGGAATACCGTACATTGCTgcaaatattgtaaaaaagtATTTCTGAATAAACAACAACTGATTTCTCATCTGAGGaaacataaaaaagaaatgctGGACGATCCTTCGGTAACTGTTTATAAGTGCGTTACTTGTCCAAAGAAGTTTGTCGATAGAGCGCTTTATCAGAAGCATAGAAATGTACACGATCCAGACTGCTGGCACAAGTTCCGTTGTAACATATGCAATCGATCGTTCATGGATAGATTCAAGCTAAAAATCCATCAGTCGATCCACGAAGGCGTGAAACCTTATCAATGCGATGTTTGCAGTAGAATGTTCAATAGGAATGCAAATATGATTAGACATCGTGCAAAGCATTTCGAACAGACTTGTCGTCACTGCGATAATACTTTTACAAACAGTCAATCTTTGAGAGAACATCTGAAAGATATTCACGGGGATACTTTGAATCCGAAGAATCGTAGTAAATGCTCGAGGGGAGATGGAAGCAAGACCAGCAGCAACGGCGATGATTATTTCATATGTGGATATTGTGGGAAACAGCTTAATACTTATTACTCTTTGCTCGATCACGAGAGAATACACACTGGCGATAAACCATACGCTTGTCATCATTGCGGCAAAGCTTTCAGAAGCATTACTGCTAGATGGGACCACATGGTGCGTCATGAAAGAGGAAACTACATTTGTGAATTGTGTGGAAAAAGCATGAgTAACAAATTGAATCTCAGACGTCATTCAAGAAAACATGCAGCTATCGAAGAGAAAAGATTCGAATGTAAAGAGTGTGGTAAATTATTCCACCTCAGATGGAAACTAAACGCACATCTTATGAGGATTCATCATTTGGCACCTAGCAATTTAACCAAATAa
- Protein Sequence
- MSGCAAVGCSNRGDKGFLMKSFPRDPKRRAIWAAQVNRDGWQPNDHSRLCEVHFDGYQWEKTREDGSKRLKCSAVPTLFDQSKVTNRRKFLKPGKRFIILNDKSETSEKAEECSKNPQSWNIGTNRENRGLLQLDCKIESELGKEAMDSKAKPIWKSCKNSNLRRDSEFSSIQNQVMNITKLGDIRCRLCTTNTAKNYYPIFGELELAEKISLCLPIIVLLTDELPLQICQDCLYNLNIAHKLIIGSLKADSCLRSKCMGTNNNLSECFKKPVEIAPKKLREIRPKSTNKDEPLFRINGPIRCDICDEFFKDMNLFDVHIETRHLFQWRCCFCDHSFETSQELIAHKTLSHSGQISKCEDCKEGEAPEEVFLKVSKIGGEDKTKTENDGTDTVDDNSQAKGIEKRKVPYLNCTKCKMVFEDGKQFRKHHTIHLPRRIKCNFCLKRCPSVFDYLMHVKIIHNPSKRNNLRTRNTVHCCKYCKKVFLNKQQLISHLRKHKKEMLDDPSVTVYKCVTCPKKFVDRALYQKHRNVHDPDCWHKFRCNICNRSFMDRFKLKIHQSIHEGVKPYQCDVCSRMFNRNANMIRHRAKHFEQTCRHCDNTFTNSQSLREHLKDIHGDTLNPKNRSKCSRGDGSKTSSNGDDYFICGYCGKQLNTYYSLLDHERIHTGDKPYACHHCGKAFRSITARWDHMVRHERGNYICELCGKSMSNKLNLRRHSRKHAAIEEKRFECKECGKLFHLRWKLNAHLMRIHHLAPSNLTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -