Pate019248.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720669.1:5953865-5956996[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0022 0.23 12.4 1.2 2 23 434 456 433 456 0.94 2 16 0.076 8 7.6 7.2 1 23 462 485 462 485 0.93 3 16 0.00063 0.066 14.1 0.3 1 23 490 513 490 513 0.97 4 16 0.00012 0.013 16.4 6.9 1 23 551 574 551 574 0.97 5 16 0.027 2.8 9.0 1.8 1 23 579 601 579 601 0.98 6 16 0.00012 0.013 16.4 0.9 1 23 607 629 607 629 0.98 7 16 0.00084 0.088 13.7 0.1 1 23 642 664 642 664 0.98 8 16 1.1 1.2e+02 3.9 0.3 2 23 678 700 677 700 0.94 9 16 1.9 2e+02 3.2 0.4 1 23 707 733 707 733 0.74 10 16 2.4e-05 0.0025 18.6 3.4 1 23 745 768 745 768 0.96 11 16 4.7e-05 0.0049 17.7 0.7 1 23 773 796 773 796 0.96 12 16 3.1 3.2e+02 2.5 0.1 1 8 814 821 814 826 0.90 13 16 0.0066 0.69 10.9 4.1 1 23 853 876 853 876 0.95 14 16 0.00015 0.015 16.1 0.3 1 23 894 917 894 917 0.94 15 16 0.00013 0.013 16.3 3.4 1 23 922 944 922 944 0.98 16 16 0.0017 0.18 12.8 3.4 1 23 951 973 951 974 0.95
Sequence Information
- Coding Sequence
- atgGAACCGGCCGGACAATGCAGTTACGTTGGCTGTGATAAACCGTGGACAATAGGACGAACATTTCACAATATACCAATTAAAAATGCCGGTCTTTGTGTGAAATGGTTAATAAACAGTGGACGTGAAGATTTGCTAACATACGAATCAACTATTCTTGAAGCTATGAATCTCGCTATTTGCAGCGTCCATTTCcaaagtcaaaattttgatgaGTTTGGTAATTTGAAGGACGATACAGTTCCCTTACAATATTGGGACCTCGGATATTCTCGTGAATTAGGAGAAATCGAAAATACCGACATTGCTGACCAATGCCAAAATGATGGGGACGACGGCGAAACAACGAGCGATTCGGAATGGAGTGAAAATGATTCAGAAGTGGGTACAGACGATGAATTCCGCACTCAATTGGGAAACGAAATAGAAGCGCTATTGAACGCTGTTCAAACATCTCGTGGACAAATGCCGAAAcaaaataagagaaaacaagaatttGATCAAACTTTGCAAggtttttacaaaaaattaaatctTAAGGGAGATAAGAATGTAgatgaaaacaaagatttCATGTCTACGAATGATTTGATTGAATTTAGAAAAGCAACTAAAGACATGTGCAGAACTTGCGCAAAGAAAAAGATTCGTCTTGTTGATATTACTGATAAAACTGTAcattcaaaaatcgatatcaTAACTAAATTAAAACTTCTCATAGAAATTAAAGATCACGATGTATTGCCGACAAAAATTTGTCTGGAATGTCTCATCAAGCTTGAACAAtcttatacattttttcaacaaatatataAAGCCGATAACATTTTACACGATATGTTGTTCGAATACAAACGACCAAGTAAAAGAATATCGAATCAAAACAAATATAATGGTCACAATAATATTCGAGCTAAACATAAATCTGGTCCTAGTAAAGCtaagaaattttgtttagaGGTAAACGATCTACCtttcaaaaataatggaaagaGTACATGGATAGTTGATGATGGTATTGacgataaaataattgatgtccaaaattCGAATGGATTTGATAGAAATATCCACGAGAGTCATAACATTGAGGATAAAAGTAGCAAAAGTAGTGAAGTttattcaaacgaaaatactgaaaatacAGTTAGCTATTTACTGTCAGATTTTTGCAATGACAATGCTGAGTTAAATTGGCTAGACGTTGTTGGcgttatggaaaaaaaagacaaagaacCAGATGCTAAGGGAAAGGCAGTTAATAGTAAGGAAAAAGAACCCACTGGTGGTCTTAGAATTTCATGCAGATACTGCGATAGTAGTTTTAGATTACGACGACAATTAAAAACGCATATAACGGTAAATCATCTGCAGCCATCTAATTACATATGCAAGTATTGTAATATTTGTTGTAAGAGCAGAGAAGACTTGTCTGAACATCACACGCAAACTCATTTTAGACGGAAATATAAATGCAACGATTGTGAAGACATATTTAGCACGAAATTAGAACTGAAATTACACATAGAAAGAATTCATTCGGAGAATGAAAACACTATCACGGTACAAGAAGAGGTGTGTTATACTTGTGGGGAAAAAGTTTTAGCAAGCGAAATGAGTACACACGCCGCATGTCACCCTGAACAAACTTTTTCTTGTAACGAATGCGAGAAAACTTTTACATCGAAGAAAAAACTTTGCAATCATATTCATCGTTTACATCCACCTTTCGCTTATACTTGTACTATTTGTGACAAGGTGATGCACAGCGAAGCTGATACTTATAAACATATGACGACGCACGATAAAAGTCCGCTCTTTCCATGCCTTGAGTGTGGCAGAATGTTTTATAACACAGAAAGATTGGAAAAGCATAAGAACACGCATGGCaaaaatagtttgaaaaaaaggaaaagggtTTGGTTTCATTGCCAGTTATGTGACGCATCTTATAGGGTAGCCGAGGAATTGATTGAACACATAGAGACCCATTCTTCAGAGGATTGGGAAAGctatagaaataaaattttatattgTGGAGAATGTAATGCGAGATTAATtggcaatgaaaaatttcgagttcATAAAATGAGGTATCATTTAGCAAAAAGAGGTGATTTCATTTGCTTACTTTGCGACAAAGTTAGTgtgcaaaattttcaatctctgaaagaatatgaaaaacacATCAACTTGCATTCTAATGAATTAAAACGTGCCGCTCCTCGGAGGTACAAATGCGAGTATTGCAACAAAGCTTTCAAGTCAAATTCTCATAGGATAAATCACATAGAttcttttcattcaaatgTTATGCATTCGTGTCCGATATGCAATCTGAAAGTAAAACGtaaaggaaatttgaaagatcaTATAGAAAGAGTTCATAGTGCAAAAAAAGAACATGGTACAATCGAAGTTTATTTAGGAGAAAAGCGTTTTCCTTGTCATATTTGCGGAGAAGAATTATTAACTGCTAAGCAAAGGGATGAGCACGAAGATGCGCATCCAAAATCTTTTCAAGATTTGGAAAAACTGCATCCTTGGGCTCAGAGATACTCGTGCGATAATTGCCACAAAAATTTCGACTATATTCATAAATTACGGCAACATCTTTTGGAAGAACACAATGATATAGAGACAGCTGCAATTATTGAAGTGTTAGAAGAGAATCAAAAATTTAAATGCGCCGAATGTGAAGCAACGTTCAAGGACCATAGTGGCTTAGCCACGCACATGGAAGACGTTCACACTAGCATAGAACACACTTGTAAAATTTGCGGAATAAAATGTAAATCAGTAAGCGGTTTACAGAAACATTTGCTTACGCATGACAGAGACAGAGCGTTATACAAATGCCAATATTGCGATAAGGAGTTCATACATGAAGAAGGCATAAAAAATCATGAACAGAATCATCACGTGAATGACAGCAAACGCATTAAAAGAGATTCACCCAATGGCGTGGATGATATAATCAACTCTCAAACATCACAGTTGGAGCTTTCTGCCAACTATTAA
- Protein Sequence
- MEPAGQCSYVGCDKPWTIGRTFHNIPIKNAGLCVKWLINSGREDLLTYESTILEAMNLAICSVHFQSQNFDEFGNLKDDTVPLQYWDLGYSRELGEIENTDIADQCQNDGDDGETTSDSEWSENDSEVGTDDEFRTQLGNEIEALLNAVQTSRGQMPKQNKRKQEFDQTLQGFYKKLNLKGDKNVDENKDFMSTNDLIEFRKATKDMCRTCAKKKIRLVDITDKTVHSKIDIITKLKLLIEIKDHDVLPTKICLECLIKLEQSYTFFQQIYKADNILHDMLFEYKRPSKRISNQNKYNGHNNIRAKHKSGPSKAKKFCLEVNDLPFKNNGKSTWIVDDGIDDKIIDVQNSNGFDRNIHESHNIEDKSSKSSEVYSNENTENTVSYLLSDFCNDNAELNWLDVVGVMEKKDKEPDAKGKAVNSKEKEPTGGLRISCRYCDSSFRLRRQLKTHITVNHLQPSNYICKYCNICCKSREDLSEHHTQTHFRRKYKCNDCEDIFSTKLELKLHIERIHSENENTITVQEEVCYTCGEKVLASEMSTHAACHPEQTFSCNECEKTFTSKKKLCNHIHRLHPPFAYTCTICDKVMHSEADTYKHMTTHDKSPLFPCLECGRMFYNTERLEKHKNTHGKNSLKKRKRVWFHCQLCDASYRVAEELIEHIETHSSEDWESYRNKILYCGECNARLIGNEKFRVHKMRYHLAKRGDFICLLCDKVSVQNFQSLKEYEKHINLHSNELKRAAPRRYKCEYCNKAFKSNSHRINHIDSFHSNVMHSCPICNLKVKRKGNLKDHIERVHSAKKEHGTIEVYLGEKRFPCHICGEELLTAKQRDEHEDAHPKSFQDLEKLHPWAQRYSCDNCHKNFDYIHKLRQHLLEEHNDIETAAIIEVLEENQKFKCAECEATFKDHSGLATHMEDVHTSIEHTCKICGIKCKSVSGLQKHLLTHDRDRALYKCQYCDKEFIHEEGIKNHEQNHHVNDSKRIKRDSPNGVDDIINSQTSQLELSANY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -