Basic Information

Insect: Phymatocera aterrima
Gene Symbol: gfi1b
Assembly: GCA_963170745.1
Location: OY720663.1:16664736-16673380[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.1 10 7.2 4.5 1 23 380 402 380 402 0.98

2 19 3.7 3.8e+02 2.3 0.7 5 23 412 431 408 431 0.89

3 19 0.00015 0.015 16.1 0.6 1 23 437 459 437 459 0.98

4 19 0.0026 0.27 12.2 3.2 1 23 465 487 465 487 0.98

5 19 0.018 1.9 9.5 0.1 3 23 495 516 493 516 0.94

6 19 0.33 34 5.6 2.8 1 23 523 546 523 546 0.97

7 19 8.7e-05 0.0091 16.8 1.9 1 23 550 572 550 572 0.96

8 19 0.0018 0.19 12.6 0.5 1 23 578 600 578 600 0.98

9 19 4.7e-05 0.0049 17.7 2.1 1 23 606 628 606 628 0.97

10 19 0.00032 0.034 15.0 0.1 1 17 633 649 633 650 0.93

11 19 0.42 44 5.2 0.4 2 15 1147 1160 1147 1165 0.79

12 19 0.00011 0.011 16.5 0.1 1 23 1203 1225 1203 1225 0.98

13 19 0.048 5.1 8.2 1.3 1 23 1231 1253 1231 1253 0.98

14 19 0.0016 0.17 12.8 1.7 2 23 1260 1281 1259 1281 0.96

15 19 3.1 3.2e+02 2.5 2.7 2 23 1288 1310 1287 1310 0.94

16 19 0.00018 0.019 15.8 0.2 1 23 1314 1336 1314 1336 0.98

17 19 0.024 2.5 9.1 2.2 3 23 1343 1363 1341 1363 0.97

18 19 3.1e-06 0.00032 21.4 0.8 1 23 1369 1391 1369 1391 0.98

19 19 6.7e-05 0.007 17.2 0.3 1 22 1396 1417 1396 1417 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.1	10	7.2	4.5	1	23	380	402	380	402	0.98
2	19	3.7	3.8e+02	2.3	0.7	5	23	412	431	408	431	0.89
3	19	0.00015	0.015	16.1	0.6	1	23	437	459	437	459	0.98
4	19	0.0026	0.27	12.2	3.2	1	23	465	487	465	487	0.98
5	19	0.018	1.9	9.5	0.1	3	23	495	516	493	516	0.94
6	19	0.33	34	5.6	2.8	1	23	523	546	523	546	0.97
7	19	8.7e-05	0.0091	16.8	1.9	1	23	550	572	550	572	0.96
8	19	0.0018	0.19	12.6	0.5	1	23	578	600	578	600	0.98
9	19	4.7e-05	0.0049	17.7	2.1	1	23	606	628	606	628	0.97
10	19	0.00032	0.034	15.0	0.1	1	17	633	649	633	650	0.93
11	19	0.42	44	5.2	0.4	2	15	1147	1160	1147	1165	0.79
12	19	0.00011	0.011	16.5	0.1	1	23	1203	1225	1203	1225	0.98
13	19	0.048	5.1	8.2	1.3	1	23	1231	1253	1231	1253	0.98
14	19	0.0016	0.17	12.8	1.7	2	23	1260	1281	1259	1281	0.96
15	19	3.1	3.2e+02	2.5	2.7	2	23	1288	1310	1287	1310	0.94
16	19	0.00018	0.019	15.8	0.2	1	23	1314	1336	1314	1336	0.98
17	19	0.024	2.5	9.1	2.2	3	23	1343	1363	1341	1363	0.97
18	19	3.1e-06	0.00032	21.4	0.8	1	23	1369	1391	1369	1391	0.98
19	19	6.7e-05	0.007	17.2	0.3	1	22	1396	1417	1396	1417	0.96

Sequence Information

Coding Sequence: atggcGTTGGAAGAGGAAGCCCAAATTTGCAGGCTCTGTGGGCAGTGCGAAAGCATTTATATTGACGTTTTTGGAGAGGAAGGCACCAAGCGATATCTCGgaatgaaaatccatacgaaaatcAACATATTGATAGATGAGAGAGACCCGCTGCCCAAGGCGATCTGCGTACAGTGCCTGGGCAAGCTGGAGTTCGTTTGCGATTTTCAGGAGGAATGCCTTCGCACTCAACAACTGTTACGCGATCGTTTCAATTGGCCATCTTCCGGTGACGTTGAAGAAAGCAAAATTGAAGACACTCCAGCTTCGTCAATGAACAACAATAGCATcgacaaaaatcaaaatcctCCGAACAATGTTGATGGCGAAGAAAACGGTGACGATAATTTGAAAGACAAAGAGATTGATGAAACGGAATCTTCAGATACTCAAATTCCAGCTGTGATAGAGGCTGAGAGAATCACTATTGACAAAGATTCCAGCACTGTTGAAGCAATGtgtaataattcattacaAAATACGCCCTCCACAAATAGTAAAAGTAGTAGTACAAAAAACGTTCTTCCCGAGTTTGATATTAATGACGCCTGCCGCAACGCACCAATCGCGAATAGACTACGGAGCCATGGAAGTAGTACAGAAAATAATGGCTCAATTACGACACAACCTTCAGACAAGCCGAATCCACCTGAAGAGGATACCAACATGATACAAATACCAACATCTACCTTGAACAAGGTTCTCACAACTGTTGCCAATTCAGAAAACATGCAAGTTACCGTTAAGGAATCTACGAGCACTAACGGACGGAATGAAGACATCAATTTCATCGTTGAATTGCGACATAAACAGAAGGCAGACTTTGTAACTGTACTAGCCAAGGTATTTCCTGATCAGGGATCGTGTATGGTAGATCGTGCGGCGATAGTGAAGCTCCTTGAAAATCAGAATGGATCCGAGATACGGGCAATCGTCGATAAAGTTTTCAACCGTTCTAACTCAAAGGAAGATGGCGATGTTGACGGTGAAACACGGCTGGCCGCAGGACGGAATCCCGAAGATCTCTTTAAGATGGACGGGGAAGAAATTACTGTGGATGAAAACATTGAGCATGTAATTGTCGAGAAACGGTCGCGTTACGTTTGTAGACTTTGTCGTAAAAAGTACAGCCGCAAAGACAAGTGTATTGTACATGTTAAAACTCATCTGGGGATAAAACAGTATCTCTGCATTCTATGTCCTGCTAAATTCGTCTGCAAATCGGATGTTTTGAAGCACATTCGGTCCACCCACACAAATCCCAGACCATTTCAGTGCCCCAAATGTCCACGAAGATTACGCTCGAAGTTCGATCTTACAGAACATGAAAATGTCCACGAAGGCATCAAGCCCTACTCCTGTGATGAGTGTGGCTTACGATATCATCACAAAGTTTCACTGCAAATGCATGCCAAATCTCACTTGCCGTCTCAAAATTTAGCTTGTGAGTATTGCGGCAACGTTTTTCCATTCCGTACGAGATTACTCAGCCACATAGCTAGCGTGCATATGAAAAATCGACGCAATTTCAGGTGCCACTTTTGTTATAATTTGTACTCCAGCCTCTCAGTGCTTAATGATCACATTAAGTCTAGCCACGCCGCAACTCATGTCTGTGAAATATGTGGTAAAGAATTTAAAGTTAAATCAAAGTACAAAACTCATGTACTTCAGCACAAAAATCCGAGGCCATTCAGCTGCCCGATTTGTGGCAACAAGTATGCATCGAGAACCTTCTTGAGCGAGCATCTTTCTAAGCATCAGGGACTTCGTAAACACGTATGCCAGAAGTGTGGCGCAACATTTGCTCAGGCTAGCCACTTGGCTGCCCACAGACACGTtcatggagagaaaaaatatcccTGTCCTGATTGCGGACGTAGGTTTAATAGGCAGGATAACATGAAGATCAAGGAGGATGACGAACTATCGAGGAAGGTCTGCATGCGATGTATAGGAACTCTGGAGTTTGTAACTGATTTTCACAACAAATGCCATCAGACTCAACGACAACTTTTACTAAATaaagaaaattcacgaaaacTTGGGAAAAATCAGATCAAAAGTGATTCAGATTTGGACAAGGAGAACACTGTGCCTCACATGAATATAGGAATGAAGGTGAATGAGAGCGGCATGACTGCTCAACTGAAACGGAAAAGCAGTCGTGTGGAGAATAAATTGGGAGAACAGAAAAAGATTAAATACGAGGATGAAGGTTTGGATGAAGATAAAATCCTCGGATCCAATAATAACGACAATTCAGAAACGAATGGAAGAACAGTCTACCTGGATGCCGAATGTTCTAGTGAAATAAAAAGTGGCCCAATTGAGTCTGGGAGTCATGTAATTCGAGTATGTAAAACGCCAGTTCCACGGAGACGACATCCCCTAGCAATAAAAAACCACAAAGAAAGTAGTGACGTAGATGAGCACAAGAATGCCCTGGTAACTCGGGTTGGCCAAAAAAAGCAAGGAAGAAAAGGGCGCAGTTCCACGATTAGGAATAAAAAcgtaaatgaaactgaggagAAATTCACCAAATATAATTTAGAAGAGAGCAGTCTAAAGGTTAGTGATACTGCTCAAGCACCCACAATTAGAGAAGTACAAAATTACGACAATTCATCCGAAAAAGAACAGAGTTCATctaaaaaattcagagaaagATTTCTCAGTGCAGCTACGGAAGAAGAGCATAAATCCAAAAGAATACTAccgaaattggtgaaaatagaaaacaccGATTCATCCAATGCGCTAGTTGGTGTTACAgcaattgtgaaaaatgatggATTAGATCGTGTAGCAAACGACATTGTAATATCGGTACCAGATGTGCCGATACGAGAATCTGGCCCTGAATCAACTGCAAAGAGCCCTCGACCTGGGGATGAGGCTGGAGTGACACGAGATCAAGGATCTGACTTGATTGAGGGACACACAGCAAGCAATGCTTGTAAAATTGTTTGTTCAGAAAATGATGGAGTAGAGATAAAGGGCTTACCAAAGGCATTGATGATAAGAAAGTCGGTAATTGAATCAGTAAAGAATGGTCAAACATTTAGAGCAGATTCCAGAAGTGTTTTGAGAATTGGAAATGAGATTAGCGCAAATGAATTGGAGCTTATTAATGATTCTGAAAGTAATGGCAGCTTGACGTCCCTGCAGCTGAAGGCAGCTCATGAAAGTCCCAAAGAATCGAGCAAAAATGAAGGTAGAAATACTGGAAGTTTTCGTGAAAGGCGCAAAAAGTCTGAAGGGCAATTCGGAAAACTTTCCGAACTGATAACAAATGAACAGAAAGAAATTATAGAAACTCTTTACACTGTGAATATGAGTGTCGTGGACGAGGCGGAAGTCTACAGAAATATCAAGGTTTTGGATAAAACGAAAGCCACGTGTGAAATATGTGGAAAGATGTATCCTAGAATGGATAAATGCCAGGTGCATGTATGGGGCCACCTAAACATGAAGCCGTATTGTTGCAAGTCGTGTGACTTTGTCACACTTACAGTGAGTAACATTCGATGTCACATCAGAAAACGCCACTTAAAAATTAAGCCGTTCCAATGCAACCTTTGTGAGAAAACTTATGGCACTGCCGTGCTTCTGGAAGAGCATATAAACTCCCACACAGGTGCAAAGCCGTATAAATGTAAGCTATGCGACTTTGCCACTTCAAATAGGCAGGTGCTAAGTTATCACAAGGCGACTCATAAGCCTGTTAAGGATATATCGTGCAGCGTATGCGGCAAGAAGTTTTTCTCCAATTGTAGAATGCGAGCTCACATGATTGTGCATAATAaagatcgaaatttgatgtgCAAGCTGTGCTCAACGTACTTATGCAATGCTGAAGCTCTTGATAAGCACTACCACAAGGTCCACTCGCGTGATTACGTCTGCAATATTTGCGGGGTTCGAACAAAGTCCAGAAAGGCTCTTACCAACCACGAAAATGTACATTCAGAAGCGAAATATGGGTGTTCCCTCTGTTCGAACGTCTACAAAAGTAAACACATGCTGAAGGAACACCTCCTGAAACATCAAGgcataagaaaatataaatgtgAACTATGCCAGAAGTCGTTCGCTCAGCAGTCTCACATTGCTGCGCATATGAGCGTGCATATGGGCAAAAGGTACCCATGTCCTGGCTGTAATAAGTTGTTCAACAGACGAGACAACATGAGGATACACACAAGACGCTGCAAGATTTTCAAATCTGATCCAGACGCAAGGGATTTATGGATGAGCCAAAATCCGACCCAGCCTCTTGAAGAGGATCATCAATTGATTGCGGCATTAAAAACGCCAGCTGCAGTCGGCGCCTTAGCGGAGTCCACAGAGAACTCGAAGTCTGATACAGAAGGATTAGAATTTAACGAGTTAGGATTATCACGGATGAATGTATTGACTGCTAAGACTGGTTATTCTAATTCAAATAACATGATCCCAGATCTGCTAGATTCGCAAGACGTTGGCCATGATGAAGGTCCTAATCAATTCAATTCCGGGGATGGTGATATTCTCCGAATTGGTGAAGTGGATATATTTCCGTTGTCCAACTCAAACATAGTTGGCAGTCGAAACGAGGGAAACACAGTGATCACCGAGAATATACTTAGTCCCGAAAGTTTTTAG
Protein Sequence: MALEEEAQICRLCGQCESIYIDVFGEEGTKRYLGMKIHTKINILIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQLLRDRFNWPSSGDVEESKIEDTPASSMNNNSIDKNQNPPNNVDGEENGDDNLKDKEIDETESSDTQIPAVIEAERITIDKDSSTVEAMCNNSLQNTPSTNSKSSSTKNVLPEFDINDACRNAPIANRLRSHGSSTENNGSITTQPSDKPNPPEEDTNMIQIPTSTLNKVLTTVANSENMQVTVKESTSTNGRNEDINFIVELRHKQKADFVTVLAKVFPDQGSCMVDRAAIVKLLENQNGSEIRAIVDKVFNRSNSKEDGDVDGETRLAAGRNPEDLFKMDGEEITVDENIEHVIVEKRSRYVCRLCRKKYSRKDKCIVHVKTHLGIKQYLCILCPAKFVCKSDVLKHIRSTHTNPRPFQCPKCPRRLRSKFDLTEHENVHEGIKPYSCDECGLRYHHKVSLQMHAKSHLPSQNLACEYCGNVFPFRTRLLSHIASVHMKNRRNFRCHFCYNLYSSLSVLNDHIKSSHAATHVCEICGKEFKVKSKYKTHVLQHKNPRPFSCPICGNKYASRTFLSEHLSKHQGLRKHVCQKCGATFAQASHLAAHRHVHGEKKYPCPDCGRRFNRQDNMKIKEDDELSRKVCMRCIGTLEFVTDFHNKCHQTQRQLLLNKENSRKLGKNQIKSDSDLDKENTVPHMNIGMKVNESGMTAQLKRKSSRVENKLGEQKKIKYEDEGLDEDKILGSNNNDNSETNGRTVYLDAECSSEIKSGPIESGSHVIRVCKTPVPRRRHPLAIKNHKESSDVDEHKNALVTRVGQKKQGRKGRSSTIRNKNVNETEEKFTKYNLEESSLKVSDTAQAPTIREVQNYDNSSEKEQSSSKKFRERFLSAATEEEHKSKRILPKLVKIENTDSSNALVGVTAIVKNDGLDRVANDIVISVPDVPIRESGPESTAKSPRPGDEAGVTRDQGSDLIEGHTASNACKIVCSENDGVEIKGLPKALMIRKSVIESVKNGQTFRADSRSVLRIGNEISANELELINDSESNGSLTSLQLKAAHESPKESSKNEGRNTGSFRERRKKSEGQFGKLSELITNEQKEIIETLYTVNMSVVDEAEVYRNIKVLDKTKATCEICGKMYPRMDKCQVHVWGHLNMKPYCCKSCDFVTLTVSNIRCHIRKRHLKIKPFQCNLCEKTYGTAVLLEEHINSHTGAKPYKCKLCDFATSNRQVLSYHKATHKPVKDISCSVCGKKFFSNCRMRAHMIVHNKDRNLMCKLCSTYLCNAEALDKHYHKVHSRDYVCNICGVRTKSRKALTNHENVHSEAKYGCSLCSNVYKSKHMLKEHLLKHQGIRKYKCELCQKSFAQQSHIAAHMSVHMGKRYPCPGCNKLFNRRDNMRIHTRRCKIFKSDPDARDLWMSQNPTQPLEEDHQLIAALKTPAAVGALAESTENSKSDTEGLEFNELGLSRMNVLTAKTGYSNSNNMIPDLLDSQDVGHDEGPNQFNSGDGDILRIGEVDIFPLSNSNIVGSRNEGNTVITENILSPESF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -