Basic Information

Insect: Phymatocera aterrima
Gene Symbol: -
Assembly: GCA_963170745.1
Location: OY720664.1:2213740-2217605[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.6 2.8e+02 2.7 0.9 1 23 385 407 385 407 0.94

2 20 0.82 86 4.3 0.2 1 23 415 437 415 437 0.94

3 20 2.3 2.5e+02 2.9 0.2 2 14 467 479 466 488 0.75

4 20 0.0083 0.87 10.6 1.2 1 23 496 519 496 519 0.92

5 20 4.4e-05 0.0046 17.8 0.7 1 23 525 549 525 549 0.91

6 20 0.56 59 4.8 0.1 2 23 584 605 583 605 0.91

7 20 4.8 5e+02 1.9 0.2 3 23 615 636 612 636 0.85

8 20 0.00078 0.082 13.8 2.2 1 22 642 663 642 666 0.90

9 20 0.00079 0.082 13.8 8.8 1 23 751 773 751 773 0.98

10 20 0.0087 0.91 10.5 0.3 1 23 780 803 780 803 0.92

11 20 8.4e-05 0.0088 16.9 2.1 1 23 809 831 809 831 0.98

12 20 0.00058 0.06 14.2 2.1 1 23 837 859 837 859 0.97

13 20 1.8e-05 0.0019 19.0 0.8 1 23 865 887 865 887 0.97

14 20 0.0035 0.37 11.8 0.9 1 23 900 923 900 923 0.96

15 20 0.00011 0.011 16.5 3.7 1 23 939 962 939 962 0.96

16 20 0.0051 0.54 11.3 1.6 1 23 970 993 970 993 0.96

17 20 4.8e-05 0.005 17.6 1.6 1 23 999 1021 999 1021 0.98

18 20 0.006 0.63 11.0 6.9 1 23 1027 1049 1027 1049 0.98

19 20 0.00011 0.012 16.5 3.3 1 23 1055 1078 1055 1078 0.98

20 20 0.0046 0.48 11.4 3.5 1 23 1084 1106 1084 1106 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.6	2.8e+02	2.7	0.9	1	23	385	407	385	407	0.94
2	20	0.82	86	4.3	0.2	1	23	415	437	415	437	0.94
3	20	2.3	2.5e+02	2.9	0.2	2	14	467	479	466	488	0.75
4	20	0.0083	0.87	10.6	1.2	1	23	496	519	496	519	0.92
5	20	4.4e-05	0.0046	17.8	0.7	1	23	525	549	525	549	0.91
6	20	0.56	59	4.8	0.1	2	23	584	605	583	605	0.91
7	20	4.8	5e+02	1.9	0.2	3	23	615	636	612	636	0.85
8	20	0.00078	0.082	13.8	2.2	1	22	642	663	642	666	0.90
9	20	0.00079	0.082	13.8	8.8	1	23	751	773	751	773	0.98
10	20	0.0087	0.91	10.5	0.3	1	23	780	803	780	803	0.92
11	20	8.4e-05	0.0088	16.9	2.1	1	23	809	831	809	831	0.98
12	20	0.00058	0.06	14.2	2.1	1	23	837	859	837	859	0.97
13	20	1.8e-05	0.0019	19.0	0.8	1	23	865	887	865	887	0.97
14	20	0.0035	0.37	11.8	0.9	1	23	900	923	900	923	0.96
15	20	0.00011	0.011	16.5	3.7	1	23	939	962	939	962	0.96
16	20	0.0051	0.54	11.3	1.6	1	23	970	993	970	993	0.96
17	20	4.8e-05	0.005	17.6	1.6	1	23	999	1021	999	1021	0.98
18	20	0.006	0.63	11.0	6.9	1	23	1027	1049	1027	1049	0.98
19	20	0.00011	0.012	16.5	3.3	1	23	1055	1078	1055	1078	0.98
20	20	0.0046	0.48	11.4	3.5	1	23	1084	1106	1084	1106	0.97

Sequence Information

Coding Sequence: atgaagacTGTCACGATAAAGCTAAACGATGCTACTAACGTGACAATTACAATGGAAGAAACATTTAAGgatctgaaagaaaaattgcagaAGATAAATCATGTAGAATTTGATATAACTTCTATGAAGATCATGGGGAAACCATTTACAGAAGATTCAATTGTAGCGGAATATCTTAACATTGGTGATAAAGAGGCTGATGAAGAAACGGTTGAATTTGTACTACCAGATTTGCCAGAATCCGGAACAACAGTTTGCAAAAATCAGAACAGCAACACACCATTGTGTAACGAATTGCTGTGCCGTTTATGTGGAATAAAAACAGAGGATCCTGTCAAAATTCTGGAATTTGAAGATattaataagaaaataaacagTTTTATTCCAGTTTCCatttcaGAGGAAGATCAATTGTCAAAGAATATTTGTGCAGCTTGTATCAAGAAACTGGaaatgataaatgaatttATTGCGATTTGTAAAGAAACTGAAAGCAAATTACTAAGCATTGCAAAATCTCAAAGAGTTGTAGTACCGAATGAAAAAACTGGGGATGTAGAAAGCCCAAACATGGAGGAAAATCTGTTGATTCAGGATGATACGACGATATTTAAATGTCCAAATTGTAAAATCGATCTAAGAATTACCAGAGCTCGAGAATGTAATAATCTTCAGAACAAAATATCGCAGATTTCTTCAGTAGTTGGAAGAATCAGCAAAAAATCTCATAATCTACGAAGCACAAATTCTAATAGAAGAATTGGCACTAGATtaggaaaattttcaagagaaacaaaaattgcagttGCAGAAAAGAATTTTATTACGACGATCGAGGAAGAAGATGGTGAAGGAATTGAAGATATTTCGACACCTTCTAAATCAAGCAGCGATAGAATTCAGAATGGTGCTAATATTTCATCAAACAGTGTAAATTCTGGTAAAAGTGGAAAAATGAAGCTCAGAGACATAAGGAAAAGAATGCTGGTCGGGGACGATATAGTTAAAGCTAGAAAACTAGAATCTGAAGCTTTAGAAAATGCTTTATTTTCCATGAATTCTGAACTTCAAGTATCCGGTATAACtggagaatttgttgagcttGATGCGCTAGAAGAAAATAGTAACAAGAGTATGAAAAAGCgcttgaaatttgagtgtgaaTCATGTGAAGTAGAATTTTACTCACAGGAGAGATATTTGTTTCATATAAAAAGACACAACTCTGTAAACatccatgaattttcgtgtgtcgtttgtaaacaaatttttctatccGAAAACGATCTCTGGGAACATAGGGATTATCATCTCTCCGATATTCCTGAGCTCGAGGAAGCCTCTCCTCCAAATTTGGTCACCCTACAGTTGGATAATAACCGCAAGTCTACGAAATCAACTTGTGAAGAATGCGGCGCTCGCTTTGTGCTTCAAGAGCGCTACGATTTTCACATCGAAAGACACAAATTTGGGAATATAAAATCATTTACTTGTAcgatttgtgagaaaaaattcaagagtGAAAATATTCTCTGGGACCATTATCAATATCAGCATAAATCTGGTGAACGTTTTGTATGCTTGACATGTGACAAATCTTTTGTTAAAAGAGCAAATTTAACTTATCATTTAAAAGTGTTTGGGCATAAAGGAGGAAAAGTTATGGCTAGTCAAAATGAGATTCAACAAACTAATACCACTAATCATGGTGTGAGGTTATCAGATGTTAGTAAACCCAGGCCTAAGATTACTTGTGGGGATTGCGGAGCTAGATTCATTCTTCAAGAACGTTATGAATTTCATATGGAAAGACACAAGTCTGGTAAAATGGACGTATGTGTTTGTATATTATGCGGAAGAGAatcgacgaacgaaaatgTACTTTGGGACCATTATCAGTATATGCATAAAAGGACGAGGCGTTACGCTTGCACAACTTGCGGTAAGCTTTTTCACAAACAGTCAATGTTAAGTAGACACCAAATAAAATATGGTCACAAAGGTGTAAAAGAAATAAACGTTGATACCGAGGATGGAAATAAAACGGCGATAGATAGCGCATCTTTTAAGAGAGTAATCACCGAAGAAGTTGTAGAAATGAAATCGGTGAACTGTGTACTATGCGGTGAAGTTGTATGGGGCGTTGATCCAAATTTAATAAACGATGCTGTAACTTGTGCAAGTTGCGAAGGGCCAGGATTATCTTTACAAGTTGATTCTGACGGGGCTAAAGTAATTTCTAGAAGGCAGTATCATTGCCATATGTGCAATAAACATTTCACGACGAAAGATAGATTGGAATATCACATAATGAGACATTCAGAGAATATGGATGAATTCATATGCAGTACTTGTGGGAAGGAATTGAGTACGGAACAAGCGCTATTTGAgcattatttgtttgttcataAAGGAGCGAGGCCCCACGTCTGTGAATTGTGTGGAAAATCTTATCAGTTTAAAGCGAGATTAAAAGAACACATGAGAAGCCATAGTGGGGAGAGACCATTTGCATGTGAAATTTGCGGCCAAAGATGTATGACAAACAATGCCCTAAGATCGCATAAGAAAACGCATATTATAGAGAAGCGTTTTCCCTGCCAAATATGTAAAAAAGCATTCCGGAAGCGGCAGGATTTGAACGAGCATTTAGAAAGACATTGGAAGAACGATAAGACGATGATGTTTCCTCAAGTATTTAGTTGCACGGTTTGCCTCGAGATGTTTCCGACTTTTAGAGTGCTGAAAAAGCACATGAAAGAATCTCACAGGGTCGAGAGTCAGGATCCGATATTAACGGATCTGCAACCTTGGTTTGAGTGCGAGGATTGTCATGAAAAATTCAAGCATCAAATGTCTCTTAAGGTTCACAGGGAGCGCGCTCATGAGGGAAAAATGAGACCTGTGTATCACTGTGATGTTTGTAACGTAACTTACAAGAATGCTCGAGTACTTTCAAATCATATTAAGAATAAGCATGAGGGCGGAAAGCGGTACAAATGCGCACAATGCGGTAAAGAATATAATCAGTCCACGTCCCTGCATAATCATATTCTACTTCATACGGGCGAGAAACCCTTTAGTTGCGAACATTGCGAGATGACATTTAGAACGAAGGAATCTCGGGATCATCATCAAAGAAAACATACCGGTGAACGACCCTACAAATGTCCAAGATGCGATAAATCTTTCACGACTACTACTCAGCGACGTGAACATCGTAAGAGAGAACATGATGAAGGAAATACACACAGCTGCCCTGAATGCGGTAAGATATGTTTCGATGAACACGGAGTTAGGAGTCATTTAAATACGCATTTCAATGATAGATTTAAAAATATAGTGgaagatgataataatcagaCGTGA
Protein Sequence: MKTVTIKLNDATNVTITMEETFKDLKEKLQKINHVEFDITSMKIMGKPFTEDSIVAEYLNIGDKEADEETVEFVLPDLPESGTTVCKNQNSNTPLCNELLCRLCGIKTEDPVKILEFEDINKKINSFIPVSISEEDQLSKNICAACIKKLEMINEFIAICKETESKLLSIAKSQRVVVPNEKTGDVESPNMEENLLIQDDTTIFKCPNCKIDLRITRARECNNLQNKISQISSVVGRISKKSHNLRSTNSNRRIGTRLGKFSRETKIAVAEKNFITTIEEEDGEGIEDISTPSKSSSDRIQNGANISSNSVNSGKSGKMKLRDIRKRMLVGDDIVKARKLESEALENALFSMNSELQVSGITGEFVELDALEENSNKSMKKRLKFECESCEVEFYSQERYLFHIKRHNSVNIHEFSCVVCKQIFLSENDLWEHRDYHLSDIPELEEASPPNLVTLQLDNNRKSTKSTCEECGARFVLQERYDFHIERHKFGNIKSFTCTICEKKFKSENILWDHYQYQHKSGERFVCLTCDKSFVKRANLTYHLKVFGHKGGKVMASQNEIQQTNTTNHGVRLSDVSKPRPKITCGDCGARFILQERYEFHMERHKSGKMDVCVCILCGRESTNENVLWDHYQYMHKRTRRYACTTCGKLFHKQSMLSRHQIKYGHKGVKEINVDTEDGNKTAIDSASFKRVITEEVVEMKSVNCVLCGEVVWGVDPNLINDAVTCASCEGPGLSLQVDSDGAKVISRRQYHCHMCNKHFTTKDRLEYHIMRHSENMDEFICSTCGKELSTEQALFEHYLFVHKGARPHVCELCGKSYQFKARLKEHMRSHSGERPFACEICGQRCMTNNALRSHKKTHIIEKRFPCQICKKAFRKRQDLNEHLERHWKNDKTMMFPQVFSCTVCLEMFPTFRVLKKHMKESHRVESQDPILTDLQPWFECEDCHEKFKHQMSLKVHRERAHEGKMRPVYHCDVCNVTYKNARVLSNHIKNKHEGGKRYKCAQCGKEYNQSTSLHNHILLHTGEKPFSCEHCEMTFRTKESRDHHQRKHTGERPYKCPRCDKSFTTTTQRREHRKREHDEGNTHSCPECGKICFDEHGVRSHLNTHFNDRFKNIVEDDNNQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -