Pate010468.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720661.1:20648961-20652872[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.034 3.5 8.7 0.8 1 21 432 452 432 453 0.93 2 14 1.8e-06 0.00019 22.1 0.7 1 23 461 483 461 483 0.98 3 14 0.0054 0.57 11.2 0.4 1 21 489 509 489 510 0.93 4 14 2.1e-06 0.00022 21.9 1.5 1 23 518 540 518 540 0.99 5 14 2.4 2.5e+02 2.8 5.1 1 21 546 566 546 571 0.91 6 14 6e-05 0.0063 17.3 0.9 2 23 576 597 575 597 0.97 7 14 1.9e-06 0.0002 22.0 1.5 1 23 603 625 603 625 0.97 8 14 0.00017 0.018 15.9 2.5 1 23 631 654 631 654 0.98 9 14 0.061 6.4 7.9 4.5 1 23 660 682 660 682 0.98 10 14 0.00045 0.047 14.6 4.9 1 23 688 711 688 711 0.98 11 14 0.47 49 5.1 0.5 1 21 739 759 739 760 0.94 12 14 2e-05 0.0021 18.8 0.2 2 23 769 790 768 790 0.98 13 14 2.8e-07 3e-05 24.7 2.7 1 23 796 818 796 818 0.97 14 14 0.043 4.5 8.3 0.5 3 23 825 846 823 846 0.94
Sequence Information
- Coding Sequence
- ATGGAGGACATTATTCTATACCCTGGGGTGGAGCTGGAGGACTTCTGTGCGGCGATGGAAGAAATCCGATCCAAGGAGAGAAAGATGGCTGGAGAAAGTAGATCAGAGATCAAAGTGCAAGATTGCACGGCATCTTTGTATAACAGAGAAAATCTACAACCAACAAGTGAGGATTGTGAATTGATAGAGCTAGACTCGGACTCTGACATAGAAGAGGACTTTCATGCAGTGGCGGAAaccataaaatatgaaaagacAAAGACAGAAACACAGGAAATTGAAACTACTTGTGTTAATCTGCCCATATATTCTGAAATGCACGAGATACAAAAATCTGAACGAAATTTACTGGATGAGAAACGATTGCCATTACTCTGTAGACTTTGTGCGATTCCATCCGACAATATGATTGATATGTTCGGTCCTACGATACTGCACAAGAGTATTATGGAGAAAATTCATCATTGCCTACCTATAACAGTAGAGAAGACAGATGATTTAACAAAAAAGGTCTGTCTGCTGTGCCTAGAAAAACTAGAATTATGCTATAGATTCCATGAAACAGTAATACAGGCTGAGCGGCAGCTCTTTTCAATTTATGAACAAATAACGAGTAAACTTTGGGTcaaaacgaaaattcattACCAAGGTTCTTTACAAAACAATGGACATTGCCCTTCTGATAAAAATGctgctgaagaaagaaaactagTTGAAGGTTCTGACAAGGATGCCAATAATATAAATACAGAGGAGTTTGGCAATAGCGACAGAGATGATATGAGGAGTTCAAGCTGTGAAAATCAGCTGGAGCCAACTATGGGAAGCATAAATCCTGGGATAATATCAGAATCCCAGAGTGAACAAGGTGTCTGTCATACTGCATCGAATAGCTCAATGCCCGAAGCATGTGCAGAAGGAGGATTCCAGTCTGACAGGAGTGTGGCTAATTTAGTGAATGATTCTTCTACAAAAGGCAGAGGACAATTGGGATGCAAAATCAAAGAACATGCAATTCCAACTATTAAGCCACATTATTCCCTGAGGAAAAGAAAGCCTGTGAAATACAACATCATTGACGATGAAACGCTGTCCTGCAACGAAGGAATCATCGAGCATGCTCCTGCTGGCCAAAGCGTTGGATGCAATAAGGGCGATATGGTTCTTGATTCAAAGACTTTTTCACAGCAGCATATAGCAGTTGCACATAACAAGCATCAAACATCCTCTGGCAATGTATCTGGATCAGAATACAGaattgaaaaattcaatgatcGGCAAACGGAAAGTCCATTTAAATGTACTCACTGTAAGCGAAAACTAGCCTCTGATGTTTCATTAAAAGAGCATGAAAAAATTTGCACTAAACGTAAAGCAAAGTTCACATGCGATTATTGTAAGAAATCATTGCCCAGGCGATATAATCTCATTCGGCATATAGAAATTCACACCAGAGTCCGATTTTACAACTGTAAATACTGCTCACAACAATTTTCCTCTGACGTTTCATTAAAAGAGCATGCAAAAATTTGCACTAAACGTAAAGCAAAGTTCACATGCGATTATTGTAAGAGATCATTGCCCAGGCGATATAATCTCGTTCGGCATATACAAACTCACACCGGAGTCCGATTTCACAACTGTAAATACTGCTCACGAAAATTATCCTCTGATGTTACATTGCAAGAGCACAAAAAAATTTGCTTCAAACATAAAGCAAAGTTGACATGCGAGCATTGTAATAAAGAATTTGTTTGGCGATCTGAGCTCATTCGTCATATGGAAATGCACACCGGAGACCGACTTCACAGCTGTGATATCTGCCCGAGgtcattcgctcgaaaatATGATCTGACTGACCACtacaaaattcatacagaaCGACGCTATTTTCAATGTTCTATCTGTGGATGGACGTTTCACAACTCTCGAATAATGAAACGACACATGAAACGTGTGCATTCGGAGGAGAAGCCTTATCCTTGTTTTGTGTGCCATAAACGATATAAATATCTATGCGGAAGAAATGTCCACATGGCTACTCATACGAGAAGAGAATCGTACAAGTGCGACCTATGTAAAGCTCAATTCACATACAAGCATAGTCTACAGCAGCATAGGAAAATGCAGCATAACCTGAGCGTGGATTCATATCCATTTCGCAATATCAAGATaaatgaaggaaaattgaatggtCAAAAAGCAGAATACTCATTTCAATGTACTCGCTGCTACGGTGAATTTTCCTCTGATGCGTCATTTAAAGATCATCGACAAGCTTGCATTGTCAATCGAAGAAGGGTTACATGCGATTATTGCGGGCTATCCACCCCAACGAAAACTAGTCTCCTTGATCATATACGAACTCATACCGGAGAACGACCTCACCGCTGTGATATCTGTGGAAAGACATTTACACGTAAATCTAATTTAGTTTATCACTACAGTATTCATGCAGACCGCCCATATGGATGCTCTCAGTGTGAGCAGAAATTCAGACTTCCCAGCGAGCGGAAAACGCACATATCTCAAATTCATTCAATGGACACCTAA
- Protein Sequence
- MEDIILYPGVELEDFCAAMEEIRSKERKMAGESRSEIKVQDCTASLYNRENLQPTSEDCELIELDSDSDIEEDFHAVAETIKYEKTKTETQEIETTCVNLPIYSEMHEIQKSERNLLDEKRLPLLCRLCAIPSDNMIDMFGPTILHKSIMEKIHHCLPITVEKTDDLTKKVCLLCLEKLELCYRFHETVIQAERQLFSIYEQITSKLWVKTKIHYQGSLQNNGHCPSDKNAAEERKLVEGSDKDANNINTEEFGNSDRDDMRSSSCENQLEPTMGSINPGIISESQSEQGVCHTASNSSMPEACAEGGFQSDRSVANLVNDSSTKGRGQLGCKIKEHAIPTIKPHYSLRKRKPVKYNIIDDETLSCNEGIIEHAPAGQSVGCNKGDMVLDSKTFSQQHIAVAHNKHQTSSGNVSGSEYRIEKFNDRQTESPFKCTHCKRKLASDVSLKEHEKICTKRKAKFTCDYCKKSLPRRYNLIRHIEIHTRVRFYNCKYCSQQFSSDVSLKEHAKICTKRKAKFTCDYCKRSLPRRYNLVRHIQTHTGVRFHNCKYCSRKLSSDVTLQEHKKICFKHKAKLTCEHCNKEFVWRSELIRHMEMHTGDRLHSCDICPRSFARKYDLTDHYKIHTERRYFQCSICGWTFHNSRIMKRHMKRVHSEEKPYPCFVCHKRYKYLCGRNVHMATHTRRESYKCDLCKAQFTYKHSLQQHRKMQHNLSVDSYPFRNIKINEGKLNGQKAEYSFQCTRCYGEFSSDASFKDHRQACIVNRRRVTCDYCGLSTPTKTSLLDHIRTHTGERPHRCDICGKTFTRKSNLVYHYSIHADRPYGCSQCEQKFRLPSERKTHISQIHSMDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -