Pate011161.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- -
- Assembly
- GCA_963170745.1
- Location
- OY720662.1:7665037-7668227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4 4.2e+02 2.1 0.1 3 17 109 123 108 127 0.87 2 15 0.0079 0.82 10.7 1.3 1 23 207 230 207 230 0.98 3 15 0.066 6.9 7.7 2.0 1 23 244 267 244 267 0.92 4 15 0.0013 0.13 13.2 3.4 1 23 273 296 273 296 0.96 5 15 6.1e-06 0.00064 20.4 0.2 2 23 305 327 305 327 0.96 6 15 0.4 42 5.3 1.8 1 23 336 359 336 359 0.95 7 15 2.2e-06 0.00023 21.8 0.5 1 23 365 387 365 387 0.98 8 15 2.9e-05 0.0031 18.3 1.1 2 23 394 415 393 415 0.97 9 15 5.3e-08 5.6e-06 26.9 2.4 1 23 420 442 420 442 0.98 10 15 0.00012 0.012 16.4 2.9 1 23 448 470 448 470 0.99 11 15 4.1e-05 0.0043 17.8 6.2 2 23 477 498 476 498 0.96 12 15 0.00034 0.036 14.9 0.2 2 23 505 526 504 526 0.95 13 15 9e-05 0.0094 16.8 0.1 3 23 534 555 532 555 0.92 14 15 4.1e-05 0.0043 17.9 2.2 2 23 566 587 565 587 0.95 15 15 0.00085 0.089 13.7 1.7 2 23 594 616 593 616 0.95
Sequence Information
- Coding Sequence
- ATGGCTGGTATTGGACGTTATCCTGAACCTCAGCCTTTTAGCACTAAGAGCAGAGTAGGAAAAATTTCTAAACAACATATTCCTTGTTCTAGTACAATGTTTGAAGTAATCCAATACAGCGGGCAAAGAGATTTGGACCCTAATCAAGTAGAATGCTTTCTAACAAGTCCAAACCAAGCTGAAAATGGCATTGAAGTTGAAAGAGACAACAAGTTATCGTGCCAACTTTGTAAACTAAGTTTTGAAGGACCAATATCAAGGCATAAACTTTTAGAACACATCAATTCAATCCacaattttaatatttatgaCAAAGGGGAAATTTGTTCTATTTGTAGCAATGTGTTTTATACTTTGCAAGCATTAAAATTCCACAAAATCGATTGTGAAAATTCTGTTTCGAGTATGTCGCAGTTCCCTGATAATACCAAGAATATCTGTAGGCGAAACCAGAAAAACAATGAGAGTAATTCAGAAAGTATGGAATGCAATATAATTCCTAGTTCCAAAGATGAATTCGAGTCTTCCGAACAAGCTAAAGAATtagaatctgaaaaatttgatgatttgATGATTAGAAAAGATTCAGCTGTTCGTAAGAATGTATTAATTAATTCTTTCAAATGTTTTATCTGCTCTGAAGTTATTCGAAGCACAAGAGATTTTAGATCACACATAAAAAGTAGccataaaaatgaattgagcAAAAATGACTTTGACGATCTGTCTTATAGGTGCAAAAAGTGCGCTACTACGTTTCCAAATATGAATTTATTACGTggacattttttcaaacaacacATAGCATTGGTTATATACAGATGTACTGTATGCCATGTTACTTTAAAGACTaagaaatctttgaaaattcattacaaCAATCTTCATGCACGAAAAATCAAAGCAGCACGTTCCTGTGATGAATGTGGCAAAGAATTTGCTAACCTCAAAGCTTTGAAGGCTCACATTAGATTAAAACATGGTCAAAATACGAACAAACAAAGATTTCAATGCAGACTTTGCCAAGGGAAGTTCGATACCAAGGAAATGAGAAAACTTCATTACAAAGAAGAACACCTCGGAGAAAGCCCATTCATATGTACAGATTGTGGAAAAGGGTTTTCTAGCAAATCTGGCCTTTATGGACATCGTCAGACACACAAAACAGATCAACCTTCCACTTGTCcatattgtgaaaaaatattcaacAGAAAAGATAGCTACCATGAACACATACTGATACATGTTGGGCCGAGACATCGCTGTCCACATTGTCCGAAGGAGTTTGTCCAGCGTAGTAATTTAGTTCGTCATATAAGAATACATACAGGTCAAAAACCTTACACCTGTACGTTTTGTGATAAACGTTTCTCCGATAAAGGTGCATGCAACTCTCATATTCGGGTTCACACTAAAGAAGAACAATGTACTTGTTCCTACTGCGGCCAAACATTTACAAAGAAGCAAAAACTTAAGTACCATATAAGAAGACACACTGGAGAAGGGTTGTTGAGCTGTGAAATTTGCTCTAAAACATTTACGAATGGTTTTGCACTGAAAGAGCATAGAGCGATTCACGATAAACAGACTCAAACTATATGTGTTGAATGTGGAAAGGCTTTTAacagtgaaaaatatttacagaGACATGTTTCTCTCGTACATCAAgatcctgaaaatttgaacattaCTCTGCATTGTCCAATTTGCGGAAAACCGTTCTATcatcaaacgaaattgaaCTCACATCTCGTTTCACATTTGGGAAAGAAACACTTGCAGTGtttaatttgtgaaaaacgaTACAGCAGCCAAAAATCCATACGCAAACATTTGAAGCAAACTCACGATTTGACTCCAGATCAACCAGAATTTAAAAACTCTGTTGGTTCTGCTTTCGAgagtaataaaatattattcaacacTATAGAGCTTGAAAAGAATTCACGCTCTGTTGGAGCTTCTGGTGAGGATAGTATCGTTACATTTCTATTCAAGAAAGAGAGTAGTTCTGCTATTTCGAGGGGCGCAGAAGAGTCTTTTGAGAGCATTGAAACTAGTGGAAATAATGGAATGAAGTGGAAAAGCGAGTTTCatgacaaaaaatcaaattcttcTTCGTCAGGCGATGAAGAAACTGTTTTAGCTGACAAGAATCATGCAAATGTTGAGATTAAGAAAGAAATCTGCCACGAGAATTTTGAAGAAGTACaattgaaagttgaaaatactgataaaaatgatcttttattcattaaaactgaagatattcttatttctaacGAAAATTGTGAACCAAATTGTGAAACGGTATTGAATTTAGCTACCATGAACGTAGtggatgaaattaaaaaaaaaataaatcataatATTCTCGATACTGTTAATGAGAAGACTAGGCATAATAtggatacaaattttcagtcagAATCACTAGAGATTGGCCAAAAAACTATCATAATAGATCGGGTATGGTCTCTAAATCAACACCTGAGCCCCAATCAGCTAGAAGCAAGCCTAAGTGCAATTATTAAAGATTCTATCAAGGTGAATGACAAGGGGAATGGATTTGAGGGTAGGAATGATACCGTCAGAGATATTGTAATTGACTGTAATAAAGATGTTGGCTGTTTGCAAGTTCTACAAAAAGAATCAATACCGACTTTAGAATCTTCCAAAGAGATTAATAGAAGACGGAAACAATTACGAACACCTAAAAAGTATGTGTCTTCTATCGAGATGTTAGAAAGACTTGATAATAAAGTGGAGGAGAATATTATaccaaaaaaaagaagagtcGAAGCGATAGCACGATCATTAGAAAAGTTGAATACTACtttcaaatga
- Protein Sequence
- MAGIGRYPEPQPFSTKSRVGKISKQHIPCSSTMFEVIQYSGQRDLDPNQVECFLTSPNQAENGIEVERDNKLSCQLCKLSFEGPISRHKLLEHINSIHNFNIYDKGEICSICSNVFYTLQALKFHKIDCENSVSSMSQFPDNTKNICRRNQKNNESNSESMECNIIPSSKDEFESSEQAKELESEKFDDLMIRKDSAVRKNVLINSFKCFICSEVIRSTRDFRSHIKSSHKNELSKNDFDDLSYRCKKCATTFPNMNLLRGHFFKQHIALVIYRCTVCHVTLKTKKSLKIHYNNLHARKIKAARSCDECGKEFANLKALKAHIRLKHGQNTNKQRFQCRLCQGKFDTKEMRKLHYKEEHLGESPFICTDCGKGFSSKSGLYGHRQTHKTDQPSTCPYCEKIFNRKDSYHEHILIHVGPRHRCPHCPKEFVQRSNLVRHIRIHTGQKPYTCTFCDKRFSDKGACNSHIRVHTKEEQCTCSYCGQTFTKKQKLKYHIRRHTGEGLLSCEICSKTFTNGFALKEHRAIHDKQTQTICVECGKAFNSEKYLQRHVSLVHQDPENLNITLHCPICGKPFYHQTKLNSHLVSHLGKKHLQCLICEKRYSSQKSIRKHLKQTHDLTPDQPEFKNSVGSAFESNKILFNTIELEKNSRSVGASGEDSIVTFLFKKESSSAISRGAEESFESIETSGNNGMKWKSEFHDKKSNSSSSGDEETVLADKNHANVEIKKEICHENFEEVQLKVENTDKNDLLFIKTEDILISNENCEPNCETVLNLATMNVVDEIKKKINHNILDTVNEKTRHNMDTNFQSESLEIGQKTIIIDRVWSLNQHLSPNQLEASLSAIIKDSIKVNDKGNGFEGRNDTVRDIVIDCNKDVGCLQVLQKESIPTLESSKEINRRRKQLRTPKKYVSSIEMLERLDNKVEENIIPKKRRVEAIARSLEKLNTTFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -